Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18935

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,089,083	+		DZA65_RS18930	0.44	-0.6
4,089,083	+		DZA65_RS18930	0.44	-0.4
4,089,084	-		DZA65_RS18930	0.44	-0.3
4,089,128	-		DZA65_RS18930	0.47	-0.6
4,089,128	-		DZA65_RS18930	0.47	-1.3
4,089,212	+		DZA65_RS18930	0.55	-0.9
4,089,212	+		DZA65_RS18930	0.55	-0.6
4,089,212	+		DZA65_RS18930	0.55	+1.1
4,089,212	+		DZA65_RS18930	0.55	+0.1
4,089,212	+		DZA65_RS18930	0.55	-0.3
4,089,212	+		DZA65_RS18930	0.55	+0.7
4,089,212	+		DZA65_RS18930	0.55	+1.3
4,089,212	+		DZA65_RS18930	0.55	-1.3
4,089,212	+		DZA65_RS18930	0.55	+0.7
4,089,212	+		DZA65_RS18930	0.55	-0.3
4,089,212	+		DZA65_RS18930	0.55	+0.1
4,089,213	-		DZA65_RS18930	0.55	-0.6
4,089,213	-		DZA65_RS18930	0.55	-1.5
4,089,213	-		DZA65_RS18930	0.55	+0.0
4,089,213	-		DZA65_RS18930	0.55	+0.1
4,089,213	-		DZA65_RS18930	0.55	-0.2
4,089,213	-		DZA65_RS18930	0.55	-1.2
4,089,213	-		DZA65_RS18930	0.55	+0.4
4,089,295	+		DZA65_RS18930	0.62	-0.9
4,089,295	+				-1.3
4,089,295	+		DZA65_RS18930	0.62	-0.1
4,089,295	+		DZA65_RS18930	0.62	-0.9
4,089,295	+		DZA65_RS18930	0.62	-0.9
4,089,296	-		DZA65_RS18930	0.62	+1.7
4,089,296	-		DZA65_RS18930	0.62	-1.2
4,089,296	-		DZA65_RS18930	0.62	+1.0
4,089,296	-		DZA65_RS18930	0.62	-1.5
4,089,296	-		DZA65_RS18930	0.62	-0.4
4,089,311	+		DZA65_RS18930	0.64	-1.3
4,089,311	+		DZA65_RS18930	0.64	+0.1
4,089,311	+		DZA65_RS18930	0.64	-0.7
4,089,311	+		DZA65_RS18930	0.64	-0.6
4,089,311	+		DZA65_RS18930	0.64	-1.6
4,089,311	+		DZA65_RS18930	0.64	+0.1
4,089,311	+		DZA65_RS18930	0.64	-0.9
4,089,311	+		DZA65_RS18930	0.64	-1.9
4,089,312	-		DZA65_RS18930	0.64	-0.9
4,089,312	-		DZA65_RS18930	0.64	-0.1
4,089,312	-		DZA65_RS18930	0.64	-0.1
4,089,312	-		DZA65_RS18930	0.64	+3.4
4,089,312	-		DZA65_RS18930	0.64	-0.4
4,089,314	+		DZA65_RS18930	0.64	-1.5
4,089,314	+		DZA65_RS18930	0.64	+0.1
4,089,314	+		DZA65_RS18930	0.64	+0.1
4,089,314	+		DZA65_RS18930	0.64	-1.4
4,089,314	+		DZA65_RS18930	0.64	-1.1
4,089,314	+		DZA65_RS18930	0.64	-1.2
4,089,315	-		DZA65_RS18930	0.64	+0.4
4,089,315	-		DZA65_RS18930	0.64	-2.1
4,089,386	+		DZA65_RS18930	0.70	-1.8
4,089,386	+		DZA65_RS18930	0.70	-0.3
4,089,386	+		DZA65_RS18930	0.70	+0.7
4,089,386	+		DZA65_RS18930	0.70	-1.3
4,089,386	+		DZA65_RS18930	0.70	+0.1
4,089,386	+		DZA65_RS18930	0.70	+1.5
4,089,386	+		DZA65_RS18930	0.70	-1.1
4,089,387	-		DZA65_RS18930	0.70	-0.6
4,089,387	-		DZA65_RS18930	0.70	+0.7
4,089,387	-		DZA65_RS18930	0.70	-0.3
4,089,387	-		DZA65_RS18930	0.70	+1.6
4,089,387	-		DZA65_RS18930	0.70	-1.1
4,089,480	-		DZA65_RS18930	0.78	+0.7
4,089,545	+		DZA65_RS18930	0.84	+4.4
4,089,545	+		DZA65_RS18930	0.84	-0.1
4,089,546	-		DZA65_RS18930	0.84	+1.7
4,089,546	-		DZA65_RS18930	0.84	+0.9
4,089,546	-		DZA65_RS18930	0.84	-1.1
4,089,546	-		DZA65_RS18930	0.84	-1.7
4,089,648	+				-0.5
4,089,648	+				-0.0
4,089,648	+				-0.3
4,089,648	+				-2.0
4,089,649	-				-0.3
4,089,649	-				-0.5
4,089,649	-				+1.1
4,089,708	-				+1.2
4,089,739	+				-0.9
4,089,747	+				-1.4
4,089,748	-				+0.1
4,089,777	+				-1.3
4,089,778	-				-0.3
4,089,804	+				-0.1
4,089,827	+				-0.9
4,089,828	-				-1.3
4,089,837	-				-1.6
4,089,845	-				-0.9
4,090,143	+		DZA65_RS18935	0.36	+0.1
4,090,143	+		DZA65_RS18935	0.36	-0.1
4,090,143	+		DZA65_RS18935	0.36	+0.7
4,090,143	+		DZA65_RS18935	0.36	-0.3
4,090,144	-		DZA65_RS18935	0.36	-3.0
4,090,144	-		DZA65_RS18935	0.36	+1.1
4,090,144	-		DZA65_RS18935	0.36	+0.6
4,090,144	-		DZA65_RS18935	0.36	+0.5
4,090,144	-		DZA65_RS18935	0.36	+0.4
4,090,144	-		DZA65_RS18935	0.36	+0.0
4,090,224	+		DZA65_RS18935	0.45	+0.2
4,090,224	+		DZA65_RS18935	0.45	+0.6
4,090,224	+		DZA65_RS18935	0.45	-0.2
4,090,224	+		DZA65_RS18935	0.45	-1.6
4,090,224	+		DZA65_RS18935	0.45	-0.3
4,090,224	+		DZA65_RS18935	0.45	-0.7
4,090,224	+		DZA65_RS18935	0.45	-2.5
4,090,224	+		DZA65_RS18935	0.45	-1.5
4,090,225	-		DZA65_RS18935	0.46	-0.5
4,090,225	-				-0.1
4,090,225	-		DZA65_RS18935	0.46	-2.0
4,090,225	-		DZA65_RS18935	0.46	+0.3
4,090,225	-		DZA65_RS18935	0.46	-1.6
4,090,225	-		DZA65_RS18935	0.46	+0.1
4,090,225	-		DZA65_RS18935	0.46	-1.3
4,090,225	-		DZA65_RS18935	0.46	+0.2
4,090,327	-		DZA65_RS18935	0.57	+0.6
4,090,327	-		DZA65_RS18935	0.57	-1.0
4,090,439	+		DZA65_RS18935	0.70	+0.8
4,090,439	+		DZA65_RS18935	0.70	+0.4
4,090,440	-		DZA65_RS18935	0.70	-0.3
4,090,440	-		DZA65_RS18935	0.70	+1.1
4,090,459	+		DZA65_RS18935	0.72	+0.3
4,090,459	+		DZA65_RS18935	0.72	+0.3
4,090,553	+		DZA65_RS18935	0.83	+0.4
4,090,553	+		DZA65_RS18935	0.83	-1.0
4,090,553	+		DZA65_RS18935	0.83	-1.9
4,090,554	-		DZA65_RS18935	0.83	+1.7
4,090,554	-		DZA65_RS18935	0.83	-0.8
4,090,563	+		DZA65_RS18935	0.84	-1.7
4,090,564	-		DZA65_RS18935	0.84	+1.7
4,090,685	+				+0.3
4,090,685	+				-0.6
4,090,685	+				-0.1
4,090,686	-				+0.5
4,090,686	-				-0.6
4,090,688	+				+0.7
4,090,688	+				-0.9
4,090,688	+				-0.6
4,090,689	-				-1.6
4,090,689	-				-1.3
4,090,716	+				+0.7
4,090,717	-				-1.5
4,090,723	-				+2.0
4,090,728	+				-0.6
4,090,729	-				-2.0
4,090,729	-				+0.6
4,090,729	-				-0.6
4,090,798	+				-0.7
4,090,798	+				+0.1
4,090,798	+				-1.0
4,090,798	+				-2.4
4,090,798	+				-0.4
4,090,798	+				+0.7
4,090,798	+				+0.1
4,090,798	+				-0.7
4,090,798	+				-1.7
4,090,798	+				-1.6
4,090,798	+				+0.1
4,090,798	+				+1.3
4,090,798	+				+0.3
4,090,798	+				-0.3
4,090,798	+				-0.9
4,090,798	+				-1.7
4,090,798	+				+1.0
4,090,798	+				+2.7
4,090,799	-				-0.9
4,090,799	-				-2.4
4,090,799	-				-0.6
4,090,799	-				+4.5
4,090,799	-				+2.2
4,090,799	-				-2.0
4,090,799	-				+0.0
4,090,799	-				-1.5
4,090,799	-				+1.7
4,090,799	-				-0.0
4,090,799	-				-0.6
4,090,799	-				-0.6
4,090,799	-				-1.7
4,090,799	-				+0.6
4,090,799	-				-3.0
4,090,839	+				+0.0
4,090,839	+				+2.7
4,090,839	+				-0.5
4,090,887	+		DZA65_RS18940	0.10	-1.4
4,090,887	+		DZA65_RS18940	0.10	-0.3
4,090,887	+		DZA65_RS18940	0.10	-0.5
4,090,887	+		DZA65_RS18940	0.10	+0.1
4,090,888	-		DZA65_RS18940	0.10	-0.5
4,091,035	-		DZA65_RS18940	0.20	-0.9
4,091,044	+		DZA65_RS18940	0.21	+0.1
4,091,044	+		DZA65_RS18940	0.21	-1.7
4,091,044	+		DZA65_RS18940	0.21	-1.1
4,091,044	+		DZA65_RS18940	0.21	-1.1
4,091,044	+		DZA65_RS18940	0.21	+0.1
4,091,045	-		DZA65_RS18940	0.21	-1.2
4,091,045	-		DZA65_RS18940	0.21	-0.6
4,091,045	-		DZA65_RS18940	0.21	+0.7
4,091,077	-		DZA65_RS18940	0.23	+0.1
4,091,101	-		DZA65_RS18940	0.25	+0.1
4,091,112	+		DZA65_RS18940	0.26	-0.3
4,091,112	+		DZA65_RS18940	0.26	+1.4
4,091,112	+		DZA65_RS18940	0.26	-0.1
4,091,112	+		DZA65_RS18940	0.26	+0.1
4,091,113	-		DZA65_RS18940	0.26	+0.3
4,091,113	-				-1.7
4,091,113	-		DZA65_RS18940	0.26	+1.1
4,091,113	-		DZA65_RS18940	0.26	+0.1
4,091,131	+		DZA65_RS18940	0.27	-0.4
4,091,131	+		DZA65_RS18940	0.27	-0.3
4,091,131	+		DZA65_RS18940	0.27	-2.2
4,091,131	+		DZA65_RS18940	0.27	-0.9
4,091,131	+		DZA65_RS18940	0.27	+0.4
4,091,131	+		DZA65_RS18940	0.27	-0.1
4,091,131	+				-1.3
4,091,132	-		DZA65_RS18940	0.27	-1.8
4,091,132	-		DZA65_RS18940	0.27	-0.7
4,091,132	-		DZA65_RS18940	0.27	-0.9
4,091,132	-		DZA65_RS18940	0.27	+0.5
4,091,132	-		DZA65_RS18940	0.27	+0.1
4,091,132	-		DZA65_RS18940	0.27	-0.9
4,091,132	-		DZA65_RS18940	0.27	-2.5
4,091,132	-		DZA65_RS18940	0.27	-1.9
4,091,132	-		DZA65_RS18940	0.27	-2.1
4,091,158	-		DZA65_RS18940	0.29	-1.3
4,091,161	+		DZA65_RS18940	0.29	-1.4
4,091,161	+		DZA65_RS18940	0.29	-1.1
4,091,161	+		DZA65_RS18940	0.29	+0.5
4,091,161	+		DZA65_RS18940	0.29	+2.4
4,091,161	+		DZA65_RS18940	0.29	+1.7
4,091,161	+		DZA65_RS18940	0.29	+0.5
4,091,161	+		DZA65_RS18940	0.29	-0.6
4,091,162	-		DZA65_RS18940	0.29	-0.1
4,091,162	-		DZA65_RS18940	0.29	-0.2
4,091,162	-		DZA65_RS18940	0.29	+0.1
4,091,162	-		DZA65_RS18940	0.29	-0.6
4,091,162	-		DZA65_RS18940	0.29	+0.3
4,091,162	-		DZA65_RS18940	0.29	+0.7
4,091,162	-		DZA65_RS18940	0.29	+1.7
4,091,192	+		DZA65_RS18940	0.32	+1.1
4,091,192	+		DZA65_RS18940	0.32	-1.2
4,091,193	-		DZA65_RS18940	0.32	+1.1
4,091,193	-		DZA65_RS18940	0.32	+0.1
4,091,193	-		DZA65_RS18940	0.32	-1.1
4,091,241	+		DZA65_RS18940	0.35	+0.1
4,091,241	+		DZA65_RS18940	0.35	-0.3
4,091,242	-		DZA65_RS18940	0.35	-0.6
4,091,242	-		DZA65_RS18940	0.35	-0.4
4,091,248	+		DZA65_RS18940	0.35	-0.6
4,091,248	+		DZA65_RS18940	0.35	-1.1
4,091,248	+		DZA65_RS18940	0.35	-0.6
4,091,248	+		DZA65_RS18940	0.35	+0.3
4,091,248	+		DZA65_RS18940	0.35	-0.9
4,091,248	+		DZA65_RS18940	0.35	-0.5
4,091,249	-		DZA65_RS18940	0.36	+0.9
4,091,249	-		DZA65_RS18940	0.36	-1.1
4,091,254	+		DZA65_RS18940	0.36	-1.3
4,091,254	+		DZA65_RS18940	0.36	+0.9
4,091,255	-		DZA65_RS18940	0.36	-1.1
4,091,281	+		DZA65_RS18940	0.38	-0.1
4,091,281	+		DZA65_RS18940	0.38	-1.0
4,091,281	+		DZA65_RS18940	0.38	-0.5
4,091,281	+		DZA65_RS18940	0.38	-1.1
4,091,281	+		DZA65_RS18940	0.38	-1.6
4,091,282	-		DZA65_RS18940	0.38	+1.7
4,091,282	-		DZA65_RS18940	0.38	-0.2
4,091,282	-		DZA65_RS18940	0.38	-0.6
4,091,311	+		DZA65_RS18940	0.40	-0.6
4,091,311	+		DZA65_RS18940	0.40	+2.3
4,091,311	+		DZA65_RS18940	0.40	+1.3
4,091,312	-		DZA65_RS18940	0.40	-0.5
4,091,312	-		DZA65_RS18940	0.40	-3.1
4,091,335	+		DZA65_RS18940	0.42	-0.3
4,091,335	+		DZA65_RS18940	0.42	-0.5
4,091,336	-		DZA65_RS18940	0.42	+1.3
4,091,336	-		DZA65_RS18940	0.42	-1.0
4,091,336	-		DZA65_RS18940	0.42	-0.1
4,091,336	-				-0.6
4,091,336	-		DZA65_RS18940	0.42	+0.2
4,091,336	-		DZA65_RS18940	0.42	+0.4
4,091,336	-		DZA65_RS18940	0.42	+0.7
4,091,336	-		DZA65_RS18940	0.42	+0.1
4,091,383	-		DZA65_RS18940	0.45	+0.1
4,091,392	+		DZA65_RS18940	0.46	-0.4
4,091,392	+		DZA65_RS18940	0.46	-2.0
4,091,392	+		DZA65_RS18940	0.46	+0.7
4,091,392	+		DZA65_RS18940	0.46	+0.1
4,091,392	+		DZA65_RS18940	0.46	-0.4
4,091,392	+		DZA65_RS18940	0.46	+0.7
4,091,392	+		DZA65_RS18940	0.46	-0.9
4,091,392	+		DZA65_RS18940	0.46	-0.3
4,091,392	+		DZA65_RS18940	0.46	+1.1
4,091,393	-		DZA65_RS18940	0.46	-0.6
4,091,393	-		DZA65_RS18940	0.46	-0.2
4,091,393	-		DZA65_RS18940	0.46	+0.7
4,091,393	-		DZA65_RS18940	0.46	-1.1
4,091,393	-		DZA65_RS18940	0.46	+3.0
4,091,393	-		DZA65_RS18940	0.46	+0.7
4,091,395	+		DZA65_RS18940	0.46	-1.3
4,091,395	+		DZA65_RS18940	0.46	-0.7
4,091,395	+		DZA65_RS18940	0.46	+1.1
4,091,396	-		DZA65_RS18940	0.46	+0.7
4,091,396	-		DZA65_RS18940	0.46	-1.1
4,091,396	-		DZA65_RS18940	0.46	+0.5
4,091,396	-		DZA65_RS18940	0.46	+0.7
4,091,396	-		DZA65_RS18940	0.46	-0.2
4,091,533	-		DZA65_RS18940	0.55	-1.7
4,091,533	-		DZA65_RS18940	0.55	+0.7
4,091,556	+		DZA65_RS18940	0.57	+0.7
4,091,557	-		DZA65_RS18940	0.57	-2.2
4,091,557	-		DZA65_RS18940	0.57	-0.9
4,091,629	+		DZA65_RS18940	0.62	-1.3
4,091,630	-		DZA65_RS18940	0.62	-1.3
4,091,703	+		DZA65_RS18940	0.67	+0.1
4,091,703	+		DZA65_RS18940	0.67	-1.1
4,091,703	+		DZA65_RS18940	0.67	+1.7
4,091,703	+		DZA65_RS18940	0.67	+4.8
4,091,703	+		DZA65_RS18940	0.67	+3.3
4,091,703	+		DZA65_RS18940	0.67	-2.0
4,091,704	-		DZA65_RS18940	0.68	+0.4
4,091,704	-		DZA65_RS18940	0.68	-0.3
4,091,704	-		DZA65_RS18940	0.68	+1.3