Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18560

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,998,785	-				+1.6
3,998,860	+				-2.5
3,998,948	+		DZA65_RS18555	0.18	-1.1
3,998,948	+		DZA65_RS18555	0.18	-0.3
3,998,949	-		DZA65_RS18555	0.18	-1.3
3,998,949	-		DZA65_RS18555	0.18	+1.0
3,998,973	+		DZA65_RS18555	0.21	-1.4
3,998,996	+		DZA65_RS18555	0.23	-0.1
3,998,996	+		DZA65_RS18555	0.23	-1.8
3,998,996	+		DZA65_RS18555	0.23	-0.1
3,998,996	+		DZA65_RS18555	0.23	-0.5
3,998,997	-		DZA65_RS18555	0.24	+0.1
3,998,997	-		DZA65_RS18555	0.24	-0.3
3,998,997	-		DZA65_RS18555	0.24	-0.3
3,998,997	-		DZA65_RS18555	0.24	-0.1
3,998,997	-		DZA65_RS18555	0.24	+0.7
3,998,999	+		DZA65_RS18555	0.24	-1.0
3,999,233	-		DZA65_RS18555	0.48	-1.6
3,999,233	-		DZA65_RS18555	0.48	-1.5
3,999,270	+		DZA65_RS18555	0.52	-0.9
3,999,270	+		DZA65_RS18555	0.52	-0.4
3,999,270	+		DZA65_RS18555	0.52	-0.6
3,999,271	-		DZA65_RS18555	0.52	-0.3
3,999,524	+		DZA65_RS18555	0.79	-1.5
3,999,645	+				-1.5
3,999,645	+				-0.3
3,999,645	+				+0.5
3,999,646	-				-1.4
3,999,646	-				-0.6
3,999,646	-				+0.3
3,999,646	-				-0.6
3,999,704	-				+0.1
3,999,842	+				+1.2
3,999,842	+				-0.9
3,999,843	-				-2.0
3,999,843	-				+2.3
3,999,843	-				+1.2
3,999,843	-				+1.0
3,999,843	-				-1.2
3,999,843	-				-0.9
3,999,866	-				+0.7
3,999,866	-				-1.9
3,999,893	-				-0.3
3,999,912	+				-1.2
3,999,912	+				+0.9
3,999,913	-				+2.0
3,999,913	-				-0.2
3,999,913	-				-2.9
3,999,913	-				+0.7
3,999,913	-				-1.3
3,999,913	-				-1.0
3,999,913	-				-0.5
3,999,998	+		DZA65_RS18560	0.16	+1.8
3,999,999	-		DZA65_RS18560	0.16	+0.2
3,999,999	-		DZA65_RS18560	0.16	-0.9
4,000,034	+		DZA65_RS18560	0.19	-1.8
4,000,034	+		DZA65_RS18560	0.19	+0.1
4,000,034	+				+0.7
4,000,034	+		DZA65_RS18560	0.19	-0.9
4,000,034	+		DZA65_RS18560	0.19	+2.1
4,000,034	+		DZA65_RS18560	0.19	-0.4
4,000,034	+		DZA65_RS18560	0.19	-2.9
4,000,035	-		DZA65_RS18560	0.19	-0.3
4,000,035	-		DZA65_RS18560	0.19	+0.4
4,000,035	-		DZA65_RS18560	0.19	+0.7
4,000,035	-		DZA65_RS18560	0.19	-1.1
4,000,035	-		DZA65_RS18560	0.19	-1.0
4,000,035	-		DZA65_RS18560	0.19	-1.0
4,000,035	-		DZA65_RS18560	0.19	+0.2
4,000,035	-		DZA65_RS18560	0.19	-2.6
4,000,035	-		DZA65_RS18560	0.19	-1.3
4,000,035	-		DZA65_RS18560	0.19	-0.9
4,000,063	-		DZA65_RS18560	0.21	+0.1
4,000,213	-		DZA65_RS18560	0.32	+0.4
4,000,271	+		DZA65_RS18560	0.37	-0.8
4,000,274	+		DZA65_RS18560	0.37	+1.1
4,000,278	+		DZA65_RS18560	0.37	-0.3
4,000,282	+		DZA65_RS18560	0.37	-0.6
4,000,283	-		DZA65_RS18560	0.37	+1.1
4,000,284	+		DZA65_RS18560	0.38	-0.9
4,000,284	+		DZA65_RS18560	0.38	-1.2
4,000,285	-		DZA65_RS18560	0.38	-0.1
4,000,293	-		DZA65_RS18560	0.38	+0.1
4,000,323	-		DZA65_RS18560	0.40	-0.6
4,000,323	-		DZA65_RS18560	0.40	-2.1
4,000,423	+		DZA65_RS18560	0.48	+0.9
4,000,426	-		DZA65_RS18560	0.48	-3.2
4,000,470	-		DZA65_RS18560	0.51	-1.5
4,000,515	+		DZA65_RS18560	0.55	-3.2
4,000,591	+		DZA65_RS18560	0.60	+1.1
4,000,636	-		DZA65_RS18560	0.64	+0.7
4,000,667	-		DZA65_RS18560	0.66	+0.1
4,000,682	-		DZA65_RS18560	0.67	-1.3
4,000,683	+		DZA65_RS18560	0.67	-0.2
4,000,683	+		DZA65_RS18560	0.67	-1.3
4,000,684	-		DZA65_RS18560	0.67	-1.4
4,000,735	+		DZA65_RS18560	0.71	+0.5
4,000,735	+		DZA65_RS18560	0.71	+0.7
4,000,741	+		DZA65_RS18560	0.72	+0.0
4,000,741	+		DZA65_RS18560	0.72	-0.1
4,000,741	+		DZA65_RS18560	0.72	-0.4
4,000,741	+		DZA65_RS18560	0.72	-1.2
4,000,741	+		DZA65_RS18560	0.72	-2.0
4,000,767	+		DZA65_RS18560	0.74	-1.3
4,000,767	+		DZA65_RS18560	0.74	-0.6
4,000,771	+		DZA65_RS18560	0.74	+0.1
4,001,129	-				-0.1
4,001,129	-				-1.7
4,001,149	+				+0.7
4,001,164	-				-0.1
4,001,195	+				+2.8
4,001,196	-				-1.1
4,001,200	+				+2.4
4,001,200	+				-2.4
4,001,200	+				-0.4
4,001,200	+				-0.6
4,001,200	+				-0.3
4,001,200	+				+3.1
4,001,201	-				-0.1
4,001,201	-				+0.3
4,001,201	-				-0.9
4,001,201	-				-1.3
4,001,201	-				-1.0
4,001,201	-				-1.1
4,001,201	-				+0.2
4,001,201	-				-0.1
4,001,201	-				-0.9
4,001,201	-				+0.1
4,001,201	-				-1.1
4,001,243	+				-0.2
4,001,243	+				+1.7
4,001,243	+				-0.6
4,001,243	+				+1.5
4,001,362	+		DZA65_RS18565	0.12	-0.9
4,001,525	+		DZA65_RS18565	0.28	-1.8
4,001,525	+		DZA65_RS18565	0.28	-1.6
4,001,525	+		DZA65_RS18565	0.28	+0.1
4,001,525	+		DZA65_RS18565	0.28	-1.3
4,001,525	+		DZA65_RS18565	0.28	+0.9
4,001,525	+		DZA65_RS18565	0.28	+0.8
4,001,526	-		DZA65_RS18565	0.29	-0.5
4,001,526	-				+0.7
4,001,526	-		DZA65_RS18565	0.29	-0.6
4,001,526	-		DZA65_RS18565	0.29	-0.9
4,001,535	+		DZA65_RS18565	0.30	-0.9
4,001,570	+		DZA65_RS18565	0.33	-0.5
4,001,571	-		DZA65_RS18565	0.33	-0.6
4,001,571	-		DZA65_RS18565	0.33	-2.4
4,001,571	-		DZA65_RS18565	0.33	+0.5
4,001,571	-		DZA65_RS18565	0.33	+0.1
4,001,700	+		DZA65_RS18565	0.46	-0.3
4,001,701	-		DZA65_RS18565	0.46	+0.1
4,001,984	+		DZA65_RS18565	0.75	+0.7
4,001,984	+		DZA65_RS18565	0.75	-1.9
4,001,984	+		DZA65_RS18565	0.75	-2.0
4,001,985	-		DZA65_RS18565	0.75	+0.4
4,001,985	-		DZA65_RS18565	0.75	+1.4
4,001,985	-		DZA65_RS18565	0.75	-0.6
4,002,036	+		DZA65_RS18565	0.80	-0.2
4,002,037	-		DZA65_RS18565	0.80	-0.3
4,002,037	-		DZA65_RS18565	0.80	-0.9
4,002,037	-		DZA65_RS18565	0.80	-2.1