Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17805

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,832,153	-		DZA65_RS17800	0.30	-0.2
3,832,180	-		DZA65_RS17800	0.32	-1.0
3,832,180	-		DZA65_RS17800	0.32	-0.3
3,832,284	-		DZA65_RS17800	0.40	-0.7
3,832,284	-		DZA65_RS17800	0.40	+0.0
3,832,284	-		DZA65_RS17800	0.40	+1.0
3,832,292	+		DZA65_RS17800	0.41	-0.7
3,832,292	+		DZA65_RS17800	0.41	+0.0
3,832,292	+		DZA65_RS17800	0.41	-1.2
3,832,292	+		DZA65_RS17800	0.41	-1.0
3,832,293	-		DZA65_RS17800	0.41	-0.2
3,832,345	+		DZA65_RS17800	0.45	+0.6
3,832,345	+		DZA65_RS17800	0.45	-0.6
3,832,353	+		DZA65_RS17800	0.46	-0.4
3,832,353	+		DZA65_RS17800	0.46	-1.8
3,832,354	-		DZA65_RS17800	0.46	-0.2
3,832,354	-		DZA65_RS17800	0.46	+1.2
3,832,354	-		DZA65_RS17800	0.46	+0.3
3,832,354	-		DZA65_RS17800	0.46	-0.1
3,832,354	-		DZA65_RS17800	0.46	+2.2
3,832,377	+		DZA65_RS17800	0.48	+1.6
3,832,377	+				-1.7
3,832,378	-		DZA65_RS17800	0.48	-0.7
3,832,378	-		DZA65_RS17800	0.48	-0.4
3,832,509	+		DZA65_RS17800	0.58	+1.5
3,832,510	-		DZA65_RS17800	0.59	-1.8
3,832,511	+		DZA65_RS17800	0.59	-1.9
3,832,512	-		DZA65_RS17800	0.59	+0.0
3,832,512	-		DZA65_RS17800	0.59	+0.6
3,832,512	-		DZA65_RS17800	0.59	+1.0
3,832,539	+		DZA65_RS17800	0.61	+1.6
3,832,539	+		DZA65_RS17800	0.61	+0.6
3,832,539	+		DZA65_RS17800	0.61	-0.6
3,832,540	-		DZA65_RS17800	0.61	+0.6
3,832,636	+		DZA65_RS17800	0.69	-0.4
3,832,636	+		DZA65_RS17800	0.69	-0.4
3,832,636	+		DZA65_RS17800	0.69	+0.0
3,832,637	-		DZA65_RS17800	0.69	-1.0
3,832,637	-		DZA65_RS17800	0.69	-0.2
3,832,637	-		DZA65_RS17800	0.69	-0.8
3,832,637	-		DZA65_RS17800	0.69	-1.3
3,832,637	-		DZA65_RS17800	0.69	+1.6
3,832,637	-		DZA65_RS17800	0.69	+0.0
3,832,637	-		DZA65_RS17800	0.69	-0.6
3,832,637	-		DZA65_RS17800	0.69	+0.6
3,832,637	-		DZA65_RS17800	0.69	-0.9
3,832,862	+		DZA65_RS17800	0.87	+0.6
3,832,862	+		DZA65_RS17800	0.87	-0.4
3,832,862	+		DZA65_RS17800	0.87	+0.6
3,832,862	+		DZA65_RS17800	0.87	-0.1
3,832,862	+		DZA65_RS17800	0.87	-0.7
3,832,887	-		DZA65_RS17800	0.89	-0.8
3,832,907	+				+0.6
3,832,908	-				-0.7
3,832,908	-				-1.7
3,832,908	-				-2.3
3,832,908	-				+1.6
3,832,908	-				-0.2
3,832,908	-				-0.9
3,832,942	+				+0.0
3,832,943	-				-0.4
3,832,943	-				-0.7
3,832,943	-				-0.6
3,832,943	-				-0.2
3,833,020	-				-0.4
3,833,056	+				-0.2
3,833,056	+				+1.0
3,833,057	-				-1.7
3,833,057	-				+6.3
3,833,057	-				+0.6
3,833,057	-				-1.3
3,833,057	-				+0.0
3,833,089	+				+1.2
3,833,159	+				+0.2
3,833,159	+				+0.0
3,833,159	+				-1.0
3,833,159	+				+0.6
3,833,160	-				+0.0
3,833,208	+		DZA65_RS17805	0.16	-0.8
3,833,325	+		DZA65_RS17805	0.32	+0.9
3,833,325	+		DZA65_RS17805	0.32	-1.2
3,833,325	+		DZA65_RS17805	0.32	-0.7
3,833,416	+		DZA65_RS17805	0.45	+2.3
3,833,416	+		DZA65_RS17805	0.45	+0.4
3,833,419	+		DZA65_RS17805	0.45	+0.6
3,833,419	+		DZA65_RS17805	0.45	-1.8
3,833,419	+		DZA65_RS17805	0.45	-0.5
3,833,420	-		DZA65_RS17805	0.45	-2.5
3,833,420	-		DZA65_RS17805	0.45	+0.6
3,833,493	-		DZA65_RS17805	0.55	+0.4
3,833,493	-		DZA65_RS17805	0.55	-0.4
3,833,621	+		DZA65_RS17805	0.73	-1.2
3,833,621	+		DZA65_RS17805	0.73	-0.7
3,833,621	+		DZA65_RS17805	0.73	-0.8
3,833,621	+		DZA65_RS17805	0.73	-1.2
3,833,656	+		DZA65_RS17805	0.78	-1.2
3,833,656	+		DZA65_RS17805	0.78	-1.6
3,833,690	+		DZA65_RS17805	0.82	-0.7
3,833,691	-		DZA65_RS17805	0.82	+1.9
3,833,691	-		DZA65_RS17805	0.82	+0.0
3,833,782	+				+1.1
3,833,785	+				-1.4
3,833,785	+				+1.3
3,833,785	+				-0.4
3,833,786	-				-1.8
3,833,786	-				+0.3
3,833,786	-				-1.1
3,833,786	-				-0.1
3,833,786	-				+0.0
3,833,786	-				+0.0
3,833,789	+				-0.0
3,833,789	+				-2.2
3,833,789	+				-0.3
3,833,789	+				-0.4
3,833,789	+				-0.4
3,833,789	+				-0.4
3,833,789	+				+0.5
3,833,789	+				-0.7
3,833,790	-				-1.5
3,833,790	-				-0.0
3,833,790	-				+0.3
3,833,846	+				+1.6
3,833,846	+				+1.2
3,833,846	+				+0.6
3,833,847	-				+0.6
3,833,847	-				-2.3
3,833,847	-				+0.5
3,833,847	-				-0.4
3,833,847	-				+0.0
3,833,850	-				-0.4
3,833,850	-				+0.0
3,833,850	-				-0.3
3,833,850	-				-1.4
3,833,850	-				+2.2
3,833,850	-				+0.3
3,833,861	+				-1.4
3,833,862	-				-1.0
3,833,877	-		DZA65_RS17810	0.12	+0.2
3,833,877	-		DZA65_RS17810	0.12	-0.9
3,833,899	+		DZA65_RS17810	0.15	+0.9
3,833,899	+		DZA65_RS17810	0.15	-1.5
3,833,900	-		DZA65_RS17810	0.15	+0.8
3,833,900	-		DZA65_RS17810	0.15	-1.0
3,833,926	-		DZA65_RS17810	0.19	+0.2
3,834,147	+		DZA65_RS17810	0.53	+0.0
3,834,290	+		DZA65_RS17810	0.75	-0.8
3,834,291	-		DZA65_RS17810	0.75	-0.5
3,834,291	-		DZA65_RS17810	0.75	+0.6
3,834,291	-		DZA65_RS17810	0.75	-0.4
3,834,291	-		DZA65_RS17810	0.75	-0.5
3,834,291	-		DZA65_RS17810	0.75	+0.5
3,834,432	+				-1.7
3,834,530	-		DZA65_RS17815	0.11	+1.0
3,834,530	-		DZA65_RS17815	0.11	-1.2
3,834,530	-		DZA65_RS17815	0.11	-1.4
3,834,530	-		DZA65_RS17815	0.11	+0.6
3,834,530	-		DZA65_RS17815	0.11	-0.7
3,834,530	-		DZA65_RS17815	0.11	-0.1
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	+0.0
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	-0.9
3,834,550	+		DZA65_RS17815	0.14	+0.6
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	-1.2
3,834,550	+		DZA65_RS17815	0.14	-1.4
3,834,550	+		DZA65_RS17815	0.14	-1.0
3,834,550	+		DZA65_RS17815	0.14	-0.7
3,834,550	+		DZA65_RS17815	0.14	-0.4
3,834,550	+		DZA65_RS17815	0.14	+0.4
3,834,551	-		DZA65_RS17815	0.14	-0.5
3,834,551	-		DZA65_RS17815	0.14	-0.3
3,834,551	-		DZA65_RS17815	0.14	-2.0
3,834,551	-		DZA65_RS17815	0.14	-0.1
3,834,551	-		DZA65_RS17815	0.14	+1.6
3,834,551	-		DZA65_RS17815	0.14	-0.2
3,834,585	+		DZA65_RS17815	0.19	-1.4
3,834,585	+		DZA65_RS17815	0.19	-1.0
3,834,586	-		DZA65_RS17815	0.20	-0.7
3,834,717	-		DZA65_RS17815	0.39	+0.0
3,834,811	+		DZA65_RS17815	0.53	-0.2
3,834,811	+		DZA65_RS17815	0.53	-0.7
3,834,811	+		DZA65_RS17815	0.53	-1.5
3,834,811	+		DZA65_RS17815	0.53	-2.4
3,834,811	+		DZA65_RS17815	0.53	-1.1
3,834,812	-		DZA65_RS17815	0.53	-0.7