Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16790

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,621,674	+				+0.2
3,621,674	+				+1.5
3,621,703	+				-0.0
3,621,703	+				-1.9
3,621,704	-				+0.9
3,621,708	-				+0.8
3,621,708	-				-0.8
3,621,716	-				-1.0
3,621,719	-				+0.7
3,621,722	-				+1.5
3,621,763	+				-2.2
3,621,763	+				-0.0
3,621,790	+				+0.1
3,621,791	-				-1.0
3,621,791	-				+0.1
3,621,791	-				+0.5
3,621,813	+				-0.0
3,621,852	-				+0.2
3,621,852	-				-0.5
3,621,896	+		DZA65_RS16785	0.15	-0.8
3,621,896	+		DZA65_RS16785	0.15	-1.5
3,622,047	+		DZA65_RS16785	0.54	-1.3
3,622,048	-		DZA65_RS16785	0.54	-0.8
3,622,052	+		DZA65_RS16785	0.55	+2.3
3,622,095	+		DZA65_RS16785	0.66	+0.2
3,622,095	+		DZA65_RS16785	0.66	-0.2
3,622,096	-		DZA65_RS16785	0.66	-0.0
3,622,096	-		DZA65_RS16785	0.66	+1.3
3,622,109	+		DZA65_RS16785	0.69	-0.6
3,622,300	+				-1.5
3,622,471	-				-0.5
3,622,595	+				-1.0
3,622,595	+				-1.5
3,622,595	+				-0.0
3,622,595	+				-0.0
3,622,595	+				-0.0
3,622,595	+				-1.0
3,622,595	+				+1.7
3,622,595	+				-1.9
3,622,595	+				-0.8
3,622,595	+				-1.7
3,622,595	+				-2.4
3,622,595	+				-0.5
3,622,596	-				-1.8
3,622,596	-				-0.3
3,622,596	-				+1.1
3,622,596	-				+0.3
3,622,596	-				+1.0
3,622,596	-				-0.0
3,622,596	-				-1.2
3,622,596	-				-2.5
3,622,596	-				-0.5
3,622,596	-				-1.9
3,622,596	-				-0.6
3,622,635	-				+0.5
3,622,635	-				-0.5
3,622,635	-				+1.0
3,622,667	+				-1.8
3,622,799	+		DZA65_RS16790	0.18	+0.9
3,622,799	+		DZA65_RS16790	0.18	+0.9
3,622,800	-		DZA65_RS16790	0.18	-0.3
3,622,800	-		DZA65_RS16790	0.18	+0.5
3,622,915	-		DZA65_RS16790	0.27	-0.5
3,622,915	-		DZA65_RS16790	0.27	-1.3
3,622,915	-		DZA65_RS16790	0.27	-0.8
3,622,915	-		DZA65_RS16790	0.27	-2.2
3,623,003	+		DZA65_RS16790	0.35	-0.2
3,623,003	+		DZA65_RS16790	0.35	-0.5
3,623,052	-		DZA65_RS16790	0.39	-0.9
3,623,058	+		DZA65_RS16790	0.39	-1.0
3,623,058	+		DZA65_RS16790	0.39	-0.4
3,623,058	+		DZA65_RS16790	0.39	+0.5
3,623,058	+		DZA65_RS16790	0.39	-1.3
3,623,058	+		DZA65_RS16790	0.39	+2.5
3,623,058	+		DZA65_RS16790	0.39	-0.5
3,623,059	-		DZA65_RS16790	0.39	-0.8
3,623,059	-		DZA65_RS16790	0.39	-0.5
3,623,059	-		DZA65_RS16790	0.39	+0.5
3,623,059	-		DZA65_RS16790	0.39	-1.5
3,623,059	-		DZA65_RS16790	0.39	-1.2
3,623,059	-		DZA65_RS16790	0.39	-1.8
3,623,091	+		DZA65_RS16790	0.42	-1.3
3,623,091	+		DZA65_RS16790	0.42	+0.5
3,623,092	-		DZA65_RS16790	0.42	-0.9
3,623,092	-		DZA65_RS16790	0.42	-0.0
3,623,201	+		DZA65_RS16790	0.51	-0.0
3,623,201	+		DZA65_RS16790	0.51	+0.4
3,623,201	+		DZA65_RS16790	0.51	-2.2
3,623,202	-		DZA65_RS16790	0.51	+0.1
3,623,205	+		DZA65_RS16790	0.51	-0.5
3,623,205	+		DZA65_RS16790	0.51	+2.1
3,623,205	+		DZA65_RS16790	0.51	+0.3
3,623,205	+		DZA65_RS16790	0.51	+0.5
3,623,205	+		DZA65_RS16790	0.51	-1.5
3,623,205	+		DZA65_RS16790	0.51	-1.8
3,623,205	+		DZA65_RS16790	0.51	-0.3
3,623,205	+		DZA65_RS16790	0.51	+0.3
3,623,206	-		DZA65_RS16790	0.51	-1.2
3,623,206	-		DZA65_RS16790	0.51	-0.6
3,623,206	-		DZA65_RS16790	0.51	-2.5
3,623,206	-		DZA65_RS16790	0.51	-3.5
3,623,206	-		DZA65_RS16790	0.51	-0.4
3,623,206	-		DZA65_RS16790	0.51	-0.9
3,623,206	-		DZA65_RS16790	0.51	-3.0
3,623,206	-		DZA65_RS16790	0.51	-0.0
3,623,206	-		DZA65_RS16790	0.51	-0.7
3,623,206	-		DZA65_RS16790	0.51	-1.4
3,623,206	-		DZA65_RS16790	0.51	+1.0
3,623,206	-		DZA65_RS16790	0.51	-0.5
3,623,206	-		DZA65_RS16790	0.51	-1.3
3,623,229	+		DZA65_RS16790	0.53	-0.6
3,623,274	+		DZA65_RS16790	0.57	-0.0
3,623,274	+		DZA65_RS16790	0.57	+0.9
3,623,274	+		DZA65_RS16790	0.57	-2.4
3,623,274	+		DZA65_RS16790	0.57	-0.0
3,623,274	+		DZA65_RS16790	0.57	-0.4
3,623,274	+		DZA65_RS16790	0.57	+0.1
3,623,274	+		DZA65_RS16790	0.57	+0.5
3,623,274	+		DZA65_RS16790	0.57	-0.8
3,623,274	+		DZA65_RS16790	0.57	-0.8
3,623,275	-		DZA65_RS16790	0.57	-0.0
3,623,275	-		DZA65_RS16790	0.57	-1.9
3,623,275	-		DZA65_RS16790	0.57	+0.2
3,623,275	-		DZA65_RS16790	0.57	-0.3
3,623,448	+		DZA65_RS16790	0.71	-0.3
3,623,448	+		DZA65_RS16790	0.71	-0.6
3,623,448	+		DZA65_RS16790	0.71	-1.0
3,623,449	-		DZA65_RS16790	0.71	+1.0
3,623,449	-		DZA65_RS16790	0.71	+1.1
3,623,460	+		DZA65_RS16790	0.72	+1.0
3,623,460	+		DZA65_RS16790	0.72	-0.9
3,623,461	-		DZA65_RS16790	0.72	-0.8
3,623,461	-		DZA65_RS16790	0.72	-0.8
3,623,461	-		DZA65_RS16790	0.72	-1.2
3,623,500	-		DZA65_RS16790	0.76	+0.2
3,623,552	+		DZA65_RS16790	0.80	+0.5
3,623,665	-		DZA65_RS16790	0.89	+2.2
3,623,665	-		DZA65_RS16790	0.89	-0.0
3,623,700	+				-0.0
3,623,700	+				+0.1
3,623,700	+				-2.2
3,623,701	-				-1.4
3,623,701	-				-1.8
3,623,702	+				-0.5
3,623,702	+				-0.0
3,623,702	+				-0.9
3,623,702	+				-0.0
3,623,702	+				-0.5
3,623,703	-				-1.5
3,623,703	-				-1.3
3,623,703	-				+1.0
3,623,703	-				-2.5
3,623,724	+				-0.0
3,623,724	+				-2.0
3,623,724	+				-1.6
3,623,725	-				-0.3
3,623,725	-				-1.4
3,623,725	-				+0.8
3,623,725	-				+0.8
3,623,725	-				+1.5
3,623,725	-				-0.0
3,623,725	-				-0.5
3,623,742	-				-0.6
3,623,757	-				+1.2
3,623,810	+				+0.7
3,623,887	-				+2.1
3,623,887	-				-0.5
3,623,887	-				+1.0
3,623,934	-				+1.0
3,623,979	+				-1.4
3,623,979	+				-1.6
3,623,979	+				-1.4
3,623,998	+				+2.7
3,623,998	+				-0.8
3,624,013	-				-0.5
3,624,043	-				-1.4
3,624,146	-				+0.2
3,624,302	+				-1.0
3,624,302	+				+1.7
3,624,302	+				-0.3
3,624,302	+				+0.9
3,624,303	-				+0.5
3,624,303	-				-0.8
3,624,303	-				-0.8
3,624,304	+				+1.1
3,624,305	-				+0.5
3,624,323	-				-0.5
3,624,323	-				-2.8
3,624,363	+				-0.3
3,624,516	-		DZA65_RS16795	0.16	+5.5
3,624,516	-		DZA65_RS16795	0.16	-0.3
3,624,519	+		DZA65_RS16795	0.17	-1.1
3,624,624	-		DZA65_RS16795	0.26	-1.6
3,624,624	-		DZA65_RS16795	0.26	+0.5
3,624,624	-		DZA65_RS16795	0.26	-0.8
3,624,624	-		DZA65_RS16795	0.26	-0.0
3,624,752	-		DZA65_RS16795	0.36	-0.7
3,624,761	-		DZA65_RS16795	0.37	+1.1
3,624,767	+		DZA65_RS16795	0.38	+0.2
3,624,767	+		DZA65_RS16795	0.38	-1.5