Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15765

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,422,929	-		DZA65_RS15760	0.59	-0.5
3,422,948	+		DZA65_RS15760	0.60	-2.3
3,422,949	-		DZA65_RS15760	0.60	-0.4
3,422,964	+		DZA65_RS15760	0.60	-1.3
3,422,994	-		DZA65_RS15760	0.62	-0.8
3,422,994	-		DZA65_RS15760	0.62	-0.2
3,422,999	+		DZA65_RS15760	0.62	-2.6
3,423,000	-		DZA65_RS15760	0.62	+0.1
3,423,005	+		DZA65_RS15760	0.62	-0.4
3,423,005	+		DZA65_RS15760	0.62	-0.3
3,423,005	+		DZA65_RS15760	0.62	-1.7
3,423,005	+		DZA65_RS15760	0.62	-0.5
3,423,006	-		DZA65_RS15760	0.62	-0.5
3,423,011	+		DZA65_RS15760	0.63	+0.9
3,423,012	-		DZA65_RS15760	0.63	-1.4
3,423,012	-		DZA65_RS15760	0.63	-2.5
3,423,012	-		DZA65_RS15760	0.63	+0.3
3,423,012	-		DZA65_RS15760	0.63	-0.0
3,423,078	+		DZA65_RS15760	0.66	-0.1
3,423,079	-		DZA65_RS15760	0.66	-0.6
3,423,102	+		DZA65_RS15760	0.67	-0.9
3,423,103	-		DZA65_RS15760	0.67	+0.2
3,423,105	+		DZA65_RS15760	0.67	+0.1
3,423,106	-		DZA65_RS15760	0.67	-0.8
3,423,188	+		DZA65_RS15760	0.71	-0.5
3,423,188	+		DZA65_RS15760	0.71	-0.1
3,423,188	+		DZA65_RS15760	0.71	-0.2
3,423,188	+		DZA65_RS15760	0.71	+1.6
3,423,188	+		DZA65_RS15760	0.71	-0.1
3,423,188	+		DZA65_RS15760	0.71	+1.1
3,423,188	+		DZA65_RS15760	0.71	-1.3
3,423,188	+		DZA65_RS15760	0.71	+0.3
3,423,189	-		DZA65_RS15760	0.71	+1.5
3,423,189	-		DZA65_RS15760	0.71	-2.0
3,423,189	-		DZA65_RS15760	0.71	+0.1
3,423,189	-		DZA65_RS15760	0.71	-1.0
3,423,192	+		DZA65_RS15760	0.71	-0.5
3,423,192	+		DZA65_RS15760	0.71	-1.5
3,423,193	-		DZA65_RS15760	0.71	-1.7
3,423,193	-		DZA65_RS15760	0.71	+1.5
3,423,193	-		DZA65_RS15760	0.71	-0.1
3,423,193	-		DZA65_RS15760	0.71	-1.0
3,423,193	-		DZA65_RS15760	0.71	-1.0
3,423,225	+		DZA65_RS15760	0.73	+0.5
3,423,225	+		DZA65_RS15760	0.73	+1.5
3,423,225	+		DZA65_RS15760	0.73	+0.7
3,423,225	+		DZA65_RS15760	0.73	-0.7
3,423,226	-		DZA65_RS15760	0.73	-0.3
3,423,226	-		DZA65_RS15760	0.73	-0.8
3,423,226	-		DZA65_RS15760	0.73	-0.7
3,423,226	-		DZA65_RS15760	0.73	-0.8
3,423,256	+		DZA65_RS15760	0.74	-0.4
3,423,256	+		DZA65_RS15760	0.74	+0.5
3,423,257	-		DZA65_RS15760	0.75	-1.5
3,423,308	+		DZA65_RS15760	0.77	-2.2
3,423,308	+		DZA65_RS15760	0.77	+0.3
3,423,309	-		DZA65_RS15760	0.77	-0.8
3,423,309	-		DZA65_RS15760	0.77	-1.5
3,423,552	-		DZA65_RS15760	0.89	-0.3
3,423,553	+		DZA65_RS15760	0.89	-2.0
3,423,554	-		DZA65_RS15760	0.89	-0.5
3,423,554	-		DZA65_RS15760	0.89	-1.1
3,423,554	-				+0.9
3,423,558	+		DZA65_RS15760	0.89	-1.8
3,423,590	+				+0.1
3,423,591	-				-0.2
3,423,591	-				-1.8
3,423,591	-				-0.5
3,423,631	-				-0.8
3,423,631	-				+2.5
3,423,634	+				+0.0
3,423,634	+				+0.2
3,423,635	-				-0.3
3,423,648	+				+0.5
3,423,648	+				-1.5
3,423,648	+				-1.5
3,423,648	+				-0.2
3,423,648	+				-0.1
3,423,649	-				-0.7
3,423,649	-				-1.0
3,423,649	-				-0.1
3,423,649	-				-1.1
3,423,649	-				-0.5
3,423,649	-				-1.1
3,423,699	-				-1.1
3,423,722	+				-0.1
3,423,722	+				+2.5
3,423,722	+				-0.5
3,423,736	+				+0.2
3,423,736	+				-0.7
3,423,736	+				-0.1
3,423,736	+				-0.7
3,423,736	+				-0.1
3,423,736	+				-0.1
3,423,736	+				+0.9
3,423,736	+				-0.1
3,423,736	+				-1.3
3,423,736	+				-0.4
3,423,736	+				-2.0
3,423,737	-				+1.5
3,423,737	-				+0.0
3,423,737	-				-1.0
3,423,737	-				-1.1
3,423,737	-				-0.4
3,423,737	-				-1.3
3,423,737	-				-1.7
3,423,740	-				+2.8
3,423,802	-				+0.9
3,423,802	-				+0.4
3,423,814	+				-0.2
3,423,814	+				+1.1
3,423,814	+				-1.5
3,423,814	+				+0.3
3,423,815	-				-1.0
3,423,815	-				+0.3
3,423,815	-				-0.5
3,423,815	-				-0.3
3,423,815	-				-0.1
3,423,815	-				+1.5
3,423,815	-				-0.1
3,423,815	-				-1.7
3,423,815	-				-0.4
3,423,816	+				+0.5
3,423,816	+				+1.5
3,423,816	+				-1.2
3,423,816	+				-0.1
3,423,816	+				-1.1
3,423,817	-				-2.9
3,423,817	-				-1.7
3,423,817	-				+0.5
3,423,817	-				-0.8
3,423,817	-				+0.5
3,423,817	-				+0.5
3,423,823	+				+0.7
3,423,823	+				-0.8
3,423,823	+				-0.7
3,423,823	+				+0.2
3,423,824	-				+0.1
3,423,824	-				+0.1
3,423,855	+				-1.8
3,423,868	+				+0.7
3,423,868	+				-1.2
3,423,869	-				-0.8
3,423,903	+				-1.3
3,423,903	+				+0.1
3,423,904	-				+2.7
3,423,904	-				-0.8
3,423,916	+				-1.5
3,423,917	-				-0.1
3,423,917	-				-0.3
3,423,921	-				-1.0
3,423,959	+				+3.1
3,423,959	+				-0.5
3,423,959	+				-0.7
3,423,959	+				+0.5
3,423,959	+				-0.5
3,423,959	+				-0.8
3,423,960	-				-0.1
3,423,960	-				-2.8
3,423,960	-				-0.4
3,423,964	-				+0.7
3,424,012	+				-2.3
3,424,012	+				-0.5
3,424,012	+				-0.3
3,424,041	-		DZA65_RS15765	0.10	-0.2
3,424,041	-		DZA65_RS15765	0.10	+0.0
3,424,075	+		DZA65_RS15765	0.13	-0.4
3,424,076	-		DZA65_RS15765	0.13	-2.0
3,424,076	-		DZA65_RS15765	0.13	-1.8
3,424,076	-		DZA65_RS15765	0.13	+1.7
3,424,114	-		DZA65_RS15765	0.17	-1.5
3,424,155	+		DZA65_RS15765	0.20	-1.4
3,424,155	+		DZA65_RS15765	0.20	-0.1
3,424,155	+		DZA65_RS15765	0.20	-0.8
3,424,156	-		DZA65_RS15765	0.20	-2.7
3,424,156	-		DZA65_RS15765	0.20	-0.8
3,424,156	-		DZA65_RS15765	0.20	+0.0
3,424,156	-		DZA65_RS15765	0.20	-0.1
3,424,232	+		DZA65_RS15765	0.26	-0.8
3,424,232	+		DZA65_RS15765	0.26	-1.4
3,424,232	+		DZA65_RS15765	0.26	-0.7
3,424,232	+		DZA65_RS15765	0.26	+0.5
3,424,232	+		DZA65_RS15765	0.26	-1.3
3,424,232	+		DZA65_RS15765	0.26	-0.7
3,424,233	-		DZA65_RS15765	0.27	-0.8
3,424,233	-		DZA65_RS15765	0.27	-1.0
3,424,233	-		DZA65_RS15765	0.27	-1.7
3,424,234	+		DZA65_RS15765	0.27	-1.1
3,424,234	+		DZA65_RS15765	0.27	+0.1
3,424,235	-		DZA65_RS15765	0.27	-1.1
3,424,235	-		DZA65_RS15765	0.27	-0.5
3,424,241	-		DZA65_RS15765	0.27	-0.1
3,424,241	-		DZA65_RS15765	0.27	+0.7
3,424,274	-		DZA65_RS15765	0.30	-0.1
3,424,274	-		DZA65_RS15765	0.30	-0.0
3,424,330	+		DZA65_RS15765	0.35	-0.6
3,424,331	-		DZA65_RS15765	0.35	+2.6
3,424,331	-		DZA65_RS15765	0.35	-1.5
3,424,336	+		DZA65_RS15765	0.35	-0.5
3,424,336	+		DZA65_RS15765	0.35	-1.5
3,424,336	+		DZA65_RS15765	0.35	-0.9
3,424,336	+		DZA65_RS15765	0.35	-0.6
3,424,336	+		DZA65_RS15765	0.35	+0.3
3,424,336	+		DZA65_RS15765	0.35	-2.5
3,424,336	+		DZA65_RS15765	0.35	+0.7
3,424,336	+		DZA65_RS15765	0.35	-0.9
3,424,336	+		DZA65_RS15765	0.35	-0.8
3,424,337	-		DZA65_RS15765	0.35	-0.5
3,424,337	-		DZA65_RS15765	0.35	+0.2
3,424,337	-		DZA65_RS15765	0.35	-2.5
3,424,337	-		DZA65_RS15765	0.35	-1.7
3,424,337	-		DZA65_RS15765	0.35	+0.6
3,424,337	-		DZA65_RS15765	0.35	-1.8
3,424,337	-		DZA65_RS15765	0.35	-0.0
3,424,337	-		DZA65_RS15765	0.35	-1.1
3,424,337	-		DZA65_RS15765	0.35	-1.0
3,424,337	-		DZA65_RS15765	0.35	+1.9
3,424,337	-		DZA65_RS15765	0.35	-0.1
3,424,337	-		DZA65_RS15765	0.35	-2.1
3,424,337	-		DZA65_RS15765	0.35	-1.3
3,424,337	-		DZA65_RS15765	0.35	-0.5
3,424,337	-		DZA65_RS15765	0.35	+0.5
3,424,598	+		DZA65_RS15765	0.57	+0.5
3,424,648	+		DZA65_RS15765	0.61	-0.7
3,424,648	+		DZA65_RS15765	0.61	+0.3
3,424,648	+		DZA65_RS15765	0.61	-0.5
3,424,648	+		DZA65_RS15765	0.61	-0.4
3,424,648	+		DZA65_RS15765	0.61	-0.1
3,424,648	+		DZA65_RS15765	0.61	+1.4
3,424,648	+		DZA65_RS15765	0.61	-0.9
3,424,648	+		DZA65_RS15765	0.61	-1.1
3,424,648	+		DZA65_RS15765	0.61	-0.5
3,424,648	+		DZA65_RS15765	0.61	+1.1
3,424,648	+		DZA65_RS15765	0.61	-0.5
3,424,648	+		DZA65_RS15765	0.61	-0.2
3,424,648	+		DZA65_RS15765	0.61	-0.4
3,424,649	-		DZA65_RS15765	0.61	+2.9
3,424,649	-		DZA65_RS15765	0.61	-1.0
3,424,649	-		DZA65_RS15765	0.61	-1.7
3,424,649	-		DZA65_RS15765	0.61	-0.3
3,424,649	-		DZA65_RS15765	0.61	-1.3
3,424,649	-		DZA65_RS15765	0.61	-1.8
3,424,649	-		DZA65_RS15765	0.61	+1.0
3,424,649	-		DZA65_RS15765	0.61	-1.0
3,424,649	-		DZA65_RS15765	0.61	-1.5
3,424,649	-		DZA65_RS15765	0.61	-0.8
3,424,649	-		DZA65_RS15765	0.61	-1.5
3,424,649	-		DZA65_RS15765	0.61	-0.1
3,424,649	-		DZA65_RS15765	0.61	+0.3
3,424,652	+		DZA65_RS15765	0.61	+1.5
3,424,652	+		DZA65_RS15765	0.61	-1.4
3,424,652	+		DZA65_RS15765	0.61	+2.4
3,424,652	+		DZA65_RS15765	0.61	-0.1
3,424,652	+		DZA65_RS15765	0.61	-2.2
3,424,652	+		DZA65_RS15765	0.61	-1.1
3,424,652	+		DZA65_RS15765	0.61	+0.1
3,424,653	-		DZA65_RS15765	0.61	-0.8
3,424,653	-		DZA65_RS15765	0.61	+0.2
3,424,653	-		DZA65_RS15765	0.61	-0.7
3,424,653	-		DZA65_RS15765	0.61	-1.3
3,424,653	-		DZA65_RS15765	0.61	-0.1
3,424,653	-		DZA65_RS15765	0.61	-1.7
3,424,653	-		DZA65_RS15765	0.61	-0.1
3,424,653	-		DZA65_RS15765	0.61	+1.5
3,424,653	-		DZA65_RS15765	0.61	+0.5
3,424,653	-		DZA65_RS15765	0.61	+0.1
3,424,653	-		DZA65_RS15765	0.61	+0.7
3,424,653	-		DZA65_RS15765	0.61	+0.6
3,424,678	+		DZA65_RS15765	0.64	-0.8
3,424,678	+		DZA65_RS15765	0.64	-0.2
3,424,679	-		DZA65_RS15765	0.64	-1.1
3,424,742	-		DZA65_RS15765	0.69	+1.0
3,424,880	+		DZA65_RS15765	0.80	+0.3
3,424,881	-		DZA65_RS15765	0.81	-0.5
3,424,881	-		DZA65_RS15765	0.81	-0.3
3,424,882	+		DZA65_RS15765	0.81	-0.5
3,424,883	-		DZA65_RS15765	0.81	+0.5
3,424,883	-		DZA65_RS15765	0.81	-1.4
3,424,883	-		DZA65_RS15765	0.81	+0.3
3,424,883	-		DZA65_RS15765	0.81	-0.8
3,424,942	+		DZA65_RS15765	0.86	+1.0
3,424,942	+		DZA65_RS15765	0.86	-0.7
3,424,942	+		DZA65_RS15765	0.86	-1.5
3,424,986	-		DZA65_RS15765	0.89	-0.3
3,424,986	-		DZA65_RS15765	0.89	-2.5
3,425,000	+				-0.1
3,425,001	-				+0.3
3,425,030	+				-1.5
3,425,091	+				-0.2
3,425,091	+				-0.3
3,425,178	+				+1.8
3,425,223	+		DZA65_RS15770	0.11	-1.7
3,425,223	+		DZA65_RS15770	0.11	-0.8
3,425,224	-				-2.0
3,425,265	+		DZA65_RS15770	0.16	-1.3
3,425,265	+		DZA65_RS15770	0.16	-0.1
3,425,265	+		DZA65_RS15770	0.16	-1.3
3,425,265	+		DZA65_RS15770	0.16	+0.9
3,425,266	-		DZA65_RS15770	0.16	-0.1
3,425,266	-		DZA65_RS15770	0.16	+0.9
3,425,266	-		DZA65_RS15770	0.16	+0.2
3,425,286	+		DZA65_RS15770	0.19	-1.5
3,425,286	+		DZA65_RS15770	0.19	-0.4
3,425,286	+		DZA65_RS15770	0.19	-1.5
3,425,286	+		DZA65_RS15770	0.19	+1.5
3,425,286	+		DZA65_RS15770	0.19	-0.1
3,425,286	+		DZA65_RS15770	0.19	-0.1
3,425,286	+		DZA65_RS15770	0.19	-0.8
3,425,287	-		DZA65_RS15770	0.19	-0.5
3,425,287	-		DZA65_RS15770	0.19	+0.3
3,425,287	-		DZA65_RS15770	0.19	-1.5
3,425,287	-		DZA65_RS15770	0.19	+0.5
3,425,287	-		DZA65_RS15770	0.19	-0.5
3,425,287	-		DZA65_RS15770	0.19	+1.1
3,425,287	-		DZA65_RS15770	0.19	-0.5
3,425,287	-		DZA65_RS15770	0.19	-1.3
3,425,287	-				-0.3
3,425,291	-		DZA65_RS15770	0.19	-1.0
3,425,306	+		DZA65_RS15770	0.21	-0.3
3,425,306	+		DZA65_RS15770	0.21	-0.1
3,425,306	+		DZA65_RS15770	0.21	-0.5
3,425,306	+		DZA65_RS15770	0.21	-0.5
3,425,306	+		DZA65_RS15770	0.21	+0.2
3,425,307	-		DZA65_RS15770	0.21	-0.5
3,425,307	-		DZA65_RS15770	0.21	-0.7
3,425,393	-		DZA65_RS15770	0.30	-0.8
3,425,490	+		DZA65_RS15770	0.41	-0.3
3,425,490	+		DZA65_RS15770	0.41	-0.7
3,425,490	+		DZA65_RS15770	0.41	-1.2
3,425,491	-		DZA65_RS15770	0.41	+0.6
3,425,491	-		DZA65_RS15770	0.41	+0.4
3,425,491	-		DZA65_RS15770	0.41	-0.7
3,425,491	-		DZA65_RS15770	0.41	-0.5
3,425,491	-		DZA65_RS15770	0.41	+0.7
3,425,491	-		DZA65_RS15770	0.41	+0.2
3,425,491	-		DZA65_RS15770	0.41	-1.0
3,425,491	-		DZA65_RS15770	0.41	-0.9
3,425,491	-		DZA65_RS15770	0.41	+0.6
3,425,491	-		DZA65_RS15770	0.41	+0.7
3,425,520	+		DZA65_RS15770	0.45	-1.3
3,425,520	+		DZA65_RS15770	0.45	-1.0
3,425,521	-		DZA65_RS15770	0.45	-1.3
3,425,521	-		DZA65_RS15770	0.45	+0.1
3,425,521	-		DZA65_RS15770	0.45	-0.5
3,425,521	-		DZA65_RS15770	0.45	+0.5
3,425,581	+		DZA65_RS15770	0.51	-0.5
3,425,676	+		DZA65_RS15770	0.62	+1.5
3,425,696	+		DZA65_RS15770	0.64	+0.1
3,425,696	+		DZA65_RS15770	0.64	+0.3
3,425,696	+		DZA65_RS15770	0.64	-0.5
3,425,697	-		DZA65_RS15770	0.64	-1.1
3,425,697	-		DZA65_RS15770	0.64	-0.8
3,425,713	+		DZA65_RS15770	0.66	-1.2
3,425,714	-		DZA65_RS15770	0.66	-0.8
3,425,757	+		DZA65_RS15770	0.71	+0.5
3,425,787	+		DZA65_RS15770	0.74	+3.8
3,425,816	-		DZA65_RS15770	0.78	+0.5
3,425,881	-		DZA65_RS15770	0.85	-0.8
3,425,950	+				+1.5
3,425,995	+				-1.5
3,426,028	+				+2.1
3,426,028	+				-0.8
3,426,028	+				+0.9