Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15395

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,335,894	-				-0.5
3,335,901	+				-0.8
3,335,901	+				+1.0
3,335,902	-				-0.5
3,335,934	+				-1.1
3,335,934	+				-0.4
3,335,985	+				-1.3
3,335,985	+				-0.1
3,335,986	-				+0.4
3,335,986	-				+1.5
3,336,030	-				+0.7
3,336,108	+		DZA65_RS15390	0.14	+0.5
3,336,108	+		DZA65_RS15390	0.14	+0.5
3,336,108	+		DZA65_RS15390	0.14	+0.5
3,336,108	+		DZA65_RS15390	0.14	-1.1
3,336,109	-		DZA65_RS15390	0.14	-0.9
3,336,109	-		DZA65_RS15390	0.14	+0.1
3,336,109	-		DZA65_RS15390	0.14	-0.3
3,336,109	-		DZA65_RS15390	0.14	-0.1
3,336,109	-		DZA65_RS15390	0.14	-0.9
3,336,109	-		DZA65_RS15390	0.14	-1.5
3,336,109	-		DZA65_RS15390	0.14	-3.5
3,336,109	-		DZA65_RS15390	0.14	+0.5
3,336,112	+		DZA65_RS15390	0.15	-1.0
3,336,112	+		DZA65_RS15390	0.15	-0.4
3,336,112	+		DZA65_RS15390	0.15	+0.2
3,336,112	+		DZA65_RS15390	0.15	-0.4
3,336,112	+		DZA65_RS15390	0.15	-1.6
3,336,112	+		DZA65_RS15390	0.15	-1.6
3,336,112	+		DZA65_RS15390	0.15	-0.8
3,336,112	+		DZA65_RS15390	0.15	-1.1
3,336,112	+		DZA65_RS15390	0.15	-0.5
3,336,113	-		DZA65_RS15390	0.15	-0.5
3,336,113	-		DZA65_RS15390	0.15	-0.1
3,336,113	-		DZA65_RS15390	0.15	-0.9
3,336,113	-		DZA65_RS15390	0.15	-1.0
3,336,113	-		DZA65_RS15390	0.15	-0.5
3,336,113	-		DZA65_RS15390	0.15	-2.1
3,336,113	-		DZA65_RS15390	0.15	-0.1
3,336,113	-		DZA65_RS15390	0.15	+0.0
3,336,172	+		DZA65_RS15390	0.24	-0.5
3,336,172	+		DZA65_RS15390	0.24	+0.5
3,336,173	-		DZA65_RS15390	0.24	-0.6
3,336,212	+		DZA65_RS15390	0.30	-1.1
3,336,213	-		DZA65_RS15390	0.30	-0.5
3,336,213	-		DZA65_RS15390	0.30	-1.7
3,336,272	-		DZA65_RS15390	0.39	-0.1
3,336,318	+		DZA65_RS15390	0.45	-0.1
3,336,318	+		DZA65_RS15390	0.45	-0.1
3,336,318	+		DZA65_RS15390	0.45	+1.5
3,336,318	+		DZA65_RS15390	0.45	+2.8
3,336,319	-		DZA65_RS15390	0.45	-0.5
3,336,319	-		DZA65_RS15390	0.45	-0.9
3,336,319	-		DZA65_RS15390	0.45	-0.1
3,336,319	-		DZA65_RS15390	0.45	+2.0
3,336,394	+		DZA65_RS15390	0.57	-0.5
3,336,394	+		DZA65_RS15390	0.57	+3.7
3,336,395	-		DZA65_RS15390	0.57	-0.9
3,336,395	-		DZA65_RS15390	0.57	-0.5
3,336,413	+		DZA65_RS15390	0.59	+0.1
3,336,413	+		DZA65_RS15390	0.59	-1.3
3,336,460	-		DZA65_RS15390	0.66	+0.2
3,336,485	+		DZA65_RS15390	0.70	+0.6
3,336,531	+		DZA65_RS15390	0.77	+0.2
3,336,531	+		DZA65_RS15390	0.77	-0.9
3,336,531	+		DZA65_RS15390	0.77	-1.9
3,336,531	+		DZA65_RS15390	0.77	-0.9
3,336,531	+		DZA65_RS15390	0.77	+0.1
3,336,531	+		DZA65_RS15390	0.77	-0.1
3,336,531	+		DZA65_RS15390	0.77	-1.9
3,336,531	+		DZA65_RS15390	0.77	+0.3
3,336,532	-		DZA65_RS15390	0.77	+2.8
3,336,532	-		DZA65_RS15390	0.77	-0.3
3,336,532	-				-0.4
3,336,532	-		DZA65_RS15390	0.77	-1.3
3,336,532	-		DZA65_RS15390	0.77	-1.1
3,336,532	-		DZA65_RS15390	0.77	+0.1
3,336,532	-		DZA65_RS15390	0.77	+0.5
3,336,532	-		DZA65_RS15390	0.77	-0.7
3,336,532	-		DZA65_RS15390	0.77	+0.1
3,336,532	-		DZA65_RS15390	0.77	-0.5
3,336,532	-		DZA65_RS15390	0.77	+0.7
3,336,553	+		DZA65_RS15390	0.80	-0.3
3,336,553	+		DZA65_RS15390	0.80	-0.9
3,336,554	-		DZA65_RS15390	0.80	+0.5
3,336,554	-		DZA65_RS15390	0.80	-1.1
3,336,554	-		DZA65_RS15390	0.80	-1.2
3,336,554	-		DZA65_RS15390	0.80	-1.1
3,336,554	-		DZA65_RS15390	0.80	+0.5
3,336,554	-		DZA65_RS15390	0.80	-0.3
3,336,554	-		DZA65_RS15390	0.80	-1.7
3,336,733	+				-1.1
3,336,769	+				+0.3
3,336,770	-				-0.5
3,336,795	-				-2.0
3,336,816	+				-2.6
3,336,829	-				-0.4
3,336,829	-				-0.7
3,336,869	+				+0.6
3,337,015	+		DZA65_RS15395	0.13	-0.1
3,337,016	-		DZA65_RS15395	0.13	-0.1
3,337,022	+		DZA65_RS15395	0.14	+0.3
3,337,023	-		DZA65_RS15395	0.14	-1.1
3,337,023	-		DZA65_RS15395	0.14	+0.7
3,337,036	+		DZA65_RS15395	0.15	+1.5
3,337,036	+		DZA65_RS15395	0.15	-1.3
3,337,037	-		DZA65_RS15395	0.15	-1.0
3,337,037	-		DZA65_RS15395	0.15	+0.1
3,337,083	+		DZA65_RS15395	0.20	+0.2
3,337,083	+		DZA65_RS15395	0.20	+0.9
3,337,083	+		DZA65_RS15395	0.20	+0.1
3,337,083	+		DZA65_RS15395	0.20	-1.1
3,337,083	+		DZA65_RS15395	0.20	-1.3
3,337,083	+		DZA65_RS15395	0.20	-0.3
3,337,083	+		DZA65_RS15395	0.20	+1.5
3,337,083	+		DZA65_RS15395	0.20	-0.3
3,337,083	+		DZA65_RS15395	0.20	+4.0
3,337,083	+		DZA65_RS15395	0.20	+0.9
3,337,083	+		DZA65_RS15395	0.20	-1.0
3,337,083	+		DZA65_RS15395	0.20	+1.5
3,337,083	+		DZA65_RS15395	0.20	-0.5
3,337,083	+		DZA65_RS15395	0.20	-0.1
3,337,083	+		DZA65_RS15395	0.20	+0.5
3,337,083	+		DZA65_RS15395	0.20	-1.9
3,337,083	+		DZA65_RS15395	0.20	+2.0
3,337,083	+		DZA65_RS15395	0.20	+0.7
3,337,084	-		DZA65_RS15395	0.20	-0.7
3,337,084	-		DZA65_RS15395	0.20	-1.6
3,337,084	-		DZA65_RS15395	0.20	-1.5
3,337,084	-		DZA65_RS15395	0.20	-0.1
3,337,084	-		DZA65_RS15395	0.20	-0.5
3,337,084	-		DZA65_RS15395	0.20	+3.3
3,337,084	-		DZA65_RS15395	0.20	-0.3
3,337,084	-		DZA65_RS15395	0.20	-0.1
3,337,084	-		DZA65_RS15395	0.20	-0.3
3,337,084	-		DZA65_RS15395	0.20	+0.7
3,337,113	+		DZA65_RS15395	0.23	-0.2
3,337,113	+		DZA65_RS15395	0.23	+1.0
3,337,113	+		DZA65_RS15395	0.23	+0.0
3,337,113	+		DZA65_RS15395	0.23	+0.1
3,337,114	-		DZA65_RS15395	0.23	-0.3
3,337,114	-		DZA65_RS15395	0.23	-1.6
3,337,114	-		DZA65_RS15395	0.23	+0.5
3,337,437	+		DZA65_RS15395	0.56	-0.9
3,337,438	-		DZA65_RS15395	0.56	-0.5
3,337,438	-		DZA65_RS15395	0.56	-2.1
3,337,492	+		DZA65_RS15395	0.62	-1.2
3,337,492	+		DZA65_RS15395	0.62	-1.3
3,337,493	-		DZA65_RS15395	0.62	-0.1
3,337,493	-		DZA65_RS15395	0.62	+1.5
3,337,493	-		DZA65_RS15395	0.62	+1.0
3,337,511	+		DZA65_RS15395	0.64	-0.1
3,337,613	+		DZA65_RS15395	0.74	-0.1
3,337,613	+		DZA65_RS15395	0.74	-0.1
3,337,613	+		DZA65_RS15395	0.74	-1.0
3,337,614	-		DZA65_RS15395	0.74	-2.0
3,337,614	-		DZA65_RS15395	0.74	-1.1
3,337,626	+				+0.0
3,337,659	+		DZA65_RS15395	0.79	-0.2
3,337,660	-		DZA65_RS15395	0.79	-2.0
3,337,660	-		DZA65_RS15395	0.79	-0.8
3,337,689	+		DZA65_RS15395	0.82	-0.1
3,337,689	+		DZA65_RS15395	0.82	+0.5
3,337,690	-		DZA65_RS15395	0.82	-1.0
3,337,712	+		DZA65_RS15395	0.84	-0.5
3,337,713	-		DZA65_RS15395	0.84	+0.2
3,337,713	-		DZA65_RS15395	0.84	-0.6
3,337,803	+				-0.5
3,337,803	+				-1.1
3,337,803	+				+0.5
3,337,803	+				-1.1
3,337,803	+				-0.9
3,337,803	+				-1.3
3,337,803	+				+0.7
3,337,804	-				+1.2
3,337,804	-				-0.1
3,337,804	-				+0.9
3,337,804	-				-0.9
3,337,804	-				-0.1
3,337,804	-				-1.3
3,337,804	-				+0.2
3,337,804	-				-0.5
3,337,804	-				-1.3
3,337,804	-				+0.4
3,337,828	-				-0.5
3,337,828	-				-1.0
3,337,860	-				+0.1
3,337,961	+		DZA65_RS15400	0.19	-0.4
3,337,961	+		DZA65_RS15400	0.19	+1.9
3,337,961	+		DZA65_RS15400	0.19	-0.5
3,337,961	+		DZA65_RS15400	0.19	-0.7
3,337,962	-		DZA65_RS15400	0.19	-1.7
3,337,962	-		DZA65_RS15400	0.19	-1.0
3,337,962	-		DZA65_RS15400	0.19	-1.6
3,337,962	-		DZA65_RS15400	0.19	-1.7
3,337,962	-		DZA65_RS15400	0.19	-1.3
3,337,967	+		DZA65_RS15400	0.20	+0.5
3,337,967	+		DZA65_RS15400	0.20	+0.6
3,337,967	+		DZA65_RS15400	0.20	-0.1
3,337,967	+		DZA65_RS15400	0.20	-0.5
3,337,967	+		DZA65_RS15400	0.20	-0.5
3,337,968	-		DZA65_RS15400	0.21	-0.7
3,337,968	-				-0.7
3,338,005	-		DZA65_RS15400	0.29	+0.6
3,338,094	+		DZA65_RS15400	0.50	+0.5
3,338,094	+		DZA65_RS15400	0.50	-0.5
3,338,095	-		DZA65_RS15400	0.50	-0.5
3,338,095	-		DZA65_RS15400	0.50	+0.5
3,338,123	+		DZA65_RS15400	0.57	+1.1
3,338,124	-		DZA65_RS15400	0.57	-3.5
3,338,124	-		DZA65_RS15400	0.57	-1.3
3,338,124	-		DZA65_RS15400	0.57	-0.9
3,338,188	+		DZA65_RS15400	0.72	-1.3
3,338,188	+		DZA65_RS15400	0.72	-0.1
3,338,188	+		DZA65_RS15400	0.72	-0.9
3,338,189	-		DZA65_RS15400	0.72	-0.1
3,338,189	-		DZA65_RS15400	0.72	+1.1
3,338,244	+		DZA65_RS15400	0.85	+1.5
3,338,245	-		DZA65_RS15400	0.85	-0.7
3,338,255	+		DZA65_RS15400	0.87	-0.1
3,338,256	-		DZA65_RS15400	0.88	-0.5
3,338,307	-				-0.2
3,338,317	+				+0.5
3,338,317	+				-0.4
3,338,318	-				-1.1
3,338,318	-				+0.5
3,338,318	-				+0.0
3,338,329	+				+2.8
3,338,531	+		DZA65_RS15405	0.14	-2.3
3,338,531	+		DZA65_RS15405	0.14	+2.1
3,338,662	+		DZA65_RS15405	0.22	-1.4
3,338,662	+		DZA65_RS15405	0.22	+3.7
3,338,662	+		DZA65_RS15405	0.22	-0.3
3,338,662	+		DZA65_RS15405	0.22	+0.5
3,338,663	-				-1.5
3,338,768	+		DZA65_RS15405	0.29	+0.1
3,338,768	+		DZA65_RS15405	0.29	+0.9
3,338,769	-		DZA65_RS15405	0.29	+0.2