Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14650

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,185,163	+				-0.5
3,185,163	+				+0.6
3,185,164	-				+0.3
3,185,164	-				+0.1
3,185,174	+				-0.6
3,185,174	+				+0.4
3,185,175	-				-1.4
3,185,175	-				-0.2
3,185,175	-				-0.9
3,185,180	+		DZA65_RS14640	0.11	+0.3
3,185,181	-		DZA65_RS14640	0.11	-2.8
3,185,362	+		DZA65_RS14640	0.60	-0.2
3,185,362	+		DZA65_RS14640	0.60	-1.2
3,185,411	+		DZA65_RS14640	0.73	-0.3
3,185,411	+		DZA65_RS14640	0.73	-0.0
3,185,411	+		DZA65_RS14640	0.73	-0.7
3,185,411	+		DZA65_RS14640	0.73	-1.2
3,185,411	+		DZA65_RS14640	0.73	+0.1
3,185,412	-		DZA65_RS14640	0.74	-1.3
3,185,412	-		DZA65_RS14640	0.74	+1.1
3,185,412	-		DZA65_RS14640	0.74	-2.4
3,185,412	-		DZA65_RS14640	0.74	+0.4
3,185,412	-		DZA65_RS14640	0.74	+0.8
3,185,529	+				+1.4
3,185,529	+				-2.2
3,185,554	+				-0.1
3,185,554	+				+1.1
3,185,554	+				-0.6
3,185,554	+				-0.2
3,185,554	+				+0.1
3,185,554	+				-0.0
3,185,554	+				-0.4
3,185,554	+				-1.6
3,185,554	+				+1.0
3,185,554	+				+1.1
3,185,554	+				+1.4
3,185,554	+				+0.7
3,185,554	+				+1.4
3,185,554	+				-2.3
3,185,554	+				-0.2
3,185,554	+				-0.0
3,185,554	+				+0.2
3,185,554	+				+0.4
3,185,554	+				+0.7
3,185,554	+				+0.2
3,185,555	-				-1.2
3,185,555	-				+1.4
3,185,555	-				+0.2
3,185,555	-				+2.4
3,185,555	-				-0.2
3,185,555	-				-1.4
3,185,555	-				+0.8
3,185,555	-				-2.6
3,185,555	-				-2.1
3,185,555	-				+0.4
3,185,555	-				-0.3
3,185,555	-				+1.7
3,185,555	-				+0.7
3,185,626	+		DZA65_RS14645	0.15	-0.6
3,185,626	+				+0.4
3,185,626	+		DZA65_RS14645	0.15	+1.4
3,185,627	-		DZA65_RS14645	0.15	-0.2
3,185,627	-		DZA65_RS14645	0.15	-0.5
3,185,627	-		DZA65_RS14645	0.15	+0.1
3,185,627	-		DZA65_RS14645	0.15	-0.6
3,185,636	+		DZA65_RS14645	0.17	-1.2
3,185,637	-		DZA65_RS14645	0.17	-0.9
3,185,637	-		DZA65_RS14645	0.17	-0.8
3,185,637	-		DZA65_RS14645	0.17	+0.8
3,185,707	-		DZA65_RS14645	0.31	+0.9
3,185,745	+		DZA65_RS14645	0.38	-1.4
3,185,746	-		DZA65_RS14645	0.39	-1.4
3,185,746	-		DZA65_RS14645	0.39	+0.4
3,185,746	-		DZA65_RS14645	0.39	+0.3
3,185,776	-		DZA65_RS14645	0.45	-0.6
3,185,866	+		DZA65_RS14645	0.63	+1.0
3,185,867	-		DZA65_RS14645	0.63	-0.9
3,185,883	+		DZA65_RS14645	0.66	+1.1
3,185,883	+		DZA65_RS14645	0.66	-0.9
3,185,907	+		DZA65_RS14645	0.71	-2.5
3,185,939	+		DZA65_RS14645	0.77	-2.3
3,185,939	+		DZA65_RS14645	0.77	-0.2
3,185,940	-		DZA65_RS14645	0.77	+1.1
3,185,940	-		DZA65_RS14645	0.77	-1.4
3,185,940	-		DZA65_RS14645	0.77	+4.5
3,185,940	-		DZA65_RS14645	0.77	-0.9
3,185,940	-		DZA65_RS14645	0.77	-0.4
3,185,941	+		DZA65_RS14645	0.78	+0.8
3,185,941	+		DZA65_RS14645	0.78	-0.2
3,185,941	+		DZA65_RS14645	0.78	+0.1
3,185,942	-		DZA65_RS14645	0.78	-0.9
3,185,942	-		DZA65_RS14645	0.78	+0.2
3,186,052	+				-0.7
3,186,052	+				-1.0
3,186,052	+				+0.1
3,186,052	+				-0.9
3,186,052	+				+0.9
3,186,052	+				+0.9
3,186,052	+				-0.4
3,186,052	+				+0.8
3,186,052	+				+4.8
3,186,052	+				-0.6
3,186,052	+				-0.9
3,186,052	+				+0.4
3,186,052	+				-1.8
3,186,053	-				+0.1
3,186,053	-				-1.3
3,186,053	-				-0.6
3,186,053	-				+0.1
3,186,053	-				-1.4
3,186,053	-				+2.4
3,186,053	-				-1.2
3,186,053	-				-1.8
3,186,053	-				-0.4
3,186,053	-				+0.6
3,186,053	-				-0.6
3,186,053	-				-1.2
3,186,053	-				-0.3
3,186,053	-				-0.9
3,186,066	+				-1.2
3,186,067	-				-0.9
3,186,067	-				+5.8
3,186,067	-				-2.4
3,186,105	+				-1.1
3,186,105	+				-0.4
3,186,105	+				+0.4
3,186,105	+				-0.2
3,186,105	+				+1.0
3,186,106	-				+1.7
3,186,106	-				-0.9
3,186,107	+				-0.4
3,186,107	+				+0.9
3,186,107	+				-0.0
3,186,107	+				-0.8
3,186,107	+				-0.5
3,186,107	+				+0.7
3,186,107	+				-0.8
3,186,107	+				+0.1
3,186,107	+				+1.4
3,186,107	+				-0.2
3,186,108	-				-1.9
3,186,108	-				-1.4
3,186,108	-				+0.0
3,186,108	-				+0.1
3,186,108	-				-0.1
3,186,108	-				-0.4
3,186,108	-				-0.6
3,186,108	-				-0.3
3,186,108	-				+0.8
3,186,108	-				+0.8
3,186,108	-				-0.7
3,186,130	-				-1.4
3,186,265	+		DZA65_RS14650	0.18	-0.5
3,186,265	+		DZA65_RS14650	0.18	+0.5
3,186,266	-		DZA65_RS14650	0.18	-1.4
3,186,266	-		DZA65_RS14650	0.18	+0.1
3,186,266	-		DZA65_RS14650	0.18	+1.4
3,186,306	+		DZA65_RS14650	0.24	-0.0
3,186,307	-		DZA65_RS14650	0.24	-0.8
3,186,307	-		DZA65_RS14650	0.24	-1.2
3,186,307	-		DZA65_RS14650	0.24	-0.9
3,186,307	-		DZA65_RS14650	0.24	-0.9
3,186,307	-				+7.2
3,186,426	+		DZA65_RS14650	0.42	-0.6
3,186,427	-		DZA65_RS14650	0.43	-0.2
3,186,455	-				-0.9
3,186,544	+		DZA65_RS14650	0.61	-1.8
3,186,544	+		DZA65_RS14650	0.61	+0.7
3,186,544	+		DZA65_RS14650	0.61	-1.2
3,186,544	+		DZA65_RS14650	0.61	-1.2
3,186,544	+		DZA65_RS14650	0.61	-1.5
3,186,544	+		DZA65_RS14650	0.61	-0.7
3,186,544	+		DZA65_RS14650	0.61	-1.6
3,186,544	+		DZA65_RS14650	0.61	-0.6
3,186,544	+		DZA65_RS14650	0.61	+0.8
3,186,544	+		DZA65_RS14650	0.61	-2.3
3,186,544	+		DZA65_RS14650	0.61	+0.8
3,186,544	+		DZA65_RS14650	0.61	-0.2
3,186,545	-		DZA65_RS14650	0.61	+0.4
3,186,545	-		DZA65_RS14650	0.61	+1.0
3,186,545	-		DZA65_RS14650	0.61	+0.7
3,186,545	-		DZA65_RS14650	0.61	-1.6
3,186,545	-		DZA65_RS14650	0.61	-1.7
3,186,559	+		DZA65_RS14650	0.63	-0.4
3,186,560	-		DZA65_RS14650	0.63	-0.6
3,186,560	-		DZA65_RS14650	0.63	-0.7
3,186,636	-		DZA65_RS14650	0.75	-1.6
3,186,658	+		DZA65_RS14650	0.78	+0.6
3,186,665	+		DZA65_RS14650	0.80	+0.4
3,186,666	-		DZA65_RS14650	0.80	-0.3
3,186,716	+		DZA65_RS14650	0.87	-0.9
3,186,752	+				-1.7
3,186,752	+				-1.1
3,186,752	+				-0.6
3,186,752	+				-1.1
3,186,753	-				-0.4
3,186,753	-				-0.2
3,186,784	+				-1.5
3,186,790	+				-1.2
3,186,850	+				-0.3
3,186,850	+				-0.3
3,186,851	-				-0.6
3,186,851	-				+0.1
3,186,851	-				-0.6
3,186,851	-				-0.9
3,186,854	+				+0.7
3,186,855	-				+0.8
3,186,855	-				+0.5
3,186,855	-				-0.6
3,186,883	+				-1.2
3,186,883	+				-1.5
3,186,945	+				-1.2
3,186,945	+				+1.4
3,186,945	+				+0.1
3,186,945	+				-1.0
3,186,946	-				-1.2
3,186,946	-				-1.4
3,186,946	-				+0.1
3,186,946	-				-0.6
3,186,992	+				+0.1
3,187,003	+		DZA65_RS14655	0.11	-1.4
3,187,003	+		DZA65_RS14655	0.11	+0.9
3,187,011	+		DZA65_RS14655	0.12	-1.1
3,187,011	+		DZA65_RS14655	0.12	-0.0
3,187,011	+		DZA65_RS14655	0.12	+0.6
3,187,011	+		DZA65_RS14655	0.12	+1.7
3,187,011	+		DZA65_RS14655	0.12	-1.2
3,187,012	-		DZA65_RS14655	0.12	-0.9
3,187,012	-		DZA65_RS14655	0.12	-0.3
3,187,012	-		DZA65_RS14655	0.12	-0.2
3,187,012	-		DZA65_RS14655	0.12	-1.2
3,187,012	-		DZA65_RS14655	0.12	+1.4
3,187,012	-		DZA65_RS14655	0.12	-1.2
3,187,012	-				+0.5
3,187,024	+		DZA65_RS14655	0.14	-2.2
3,187,024	+		DZA65_RS14655	0.14	-0.2
3,187,024	+		DZA65_RS14655	0.14	-0.7
3,187,025	-		DZA65_RS14655	0.14	+0.1
3,187,025	-		DZA65_RS14655	0.14	-0.8
3,187,240	+		DZA65_RS14655	0.39	+0.3
3,187,240	+		DZA65_RS14655	0.39	+0.7
3,187,240	+		DZA65_RS14655	0.39	-1.2
3,187,240	+		DZA65_RS14655	0.39	-0.4
3,187,240	+		DZA65_RS14655	0.39	-1.8
3,187,240	+		DZA65_RS14655	0.39	-0.9
3,187,241	-				-0.9
3,187,241	-		DZA65_RS14655	0.40	-2.3
3,187,241	-		DZA65_RS14655	0.40	-0.9
3,187,241	-		DZA65_RS14655	0.40	-1.6
3,187,241	-		DZA65_RS14655	0.40	-0.6
3,187,241	-		DZA65_RS14655	0.40	-1.3
3,187,268	+		DZA65_RS14655	0.43	-0.5
3,187,342	+		DZA65_RS14655	0.52	-0.9
3,187,342	+		DZA65_RS14655	0.52	-2.1
3,187,342	+		DZA65_RS14655	0.52	-0.6
3,187,342	+				+0.1
3,187,343	-		DZA65_RS14655	0.52	-0.9
3,187,343	-		DZA65_RS14655	0.52	-0.2
3,187,343	-		DZA65_RS14655	0.52	-1.6
3,187,352	-		DZA65_RS14655	0.53	+0.7
3,187,352	-		DZA65_RS14655	0.53	-0.5
3,187,352	-		DZA65_RS14655	0.53	-1.0
3,187,489	-		DZA65_RS14655	0.69	-0.6
3,187,523	+		DZA65_RS14655	0.73	-0.9
3,187,523	+		DZA65_RS14655	0.73	+0.6
3,187,677	-				-0.0
3,187,737	+				-0.7
3,187,737	+				-0.6
3,187,737	+				-2.5
3,187,737	+				-0.1
3,187,738	-				-0.1