Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14110

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Upstate
				remove
3,026,892	+			-0.3
3,026,892	+			+0.4
3,026,892	+			+2.4
3,026,893	-			-0.3
3,026,981	+			+0.7
3,026,982	-			-0.4
3,027,002	+			+1.0
3,027,002	+			+0.4
3,027,002	+			-0.9
3,027,002	+			-0.6
3,027,002	+			+0.7
3,027,002	+			+1.3
3,027,002	+			+0.6
3,027,002	+			+1.1
3,027,002	+			-1.6
3,027,002	+			+2.1
3,027,003	-			-0.2
3,027,003	-			-0.5
3,027,003	-			-0.9
3,027,003	-			-1.1
3,027,003	-			-0.2
3,027,003	-			-0.2
3,027,003	-			-2.1
3,027,003	-			-0.6
3,027,003	-			-1.0
3,027,003	-			+0.4
3,027,003	-			+1.4
3,027,003	-			-1.4
3,027,003	-			-0.8
3,027,003	-			-1.2
3,027,003	-			+0.4
3,027,085	-	DZA65_RS14105	0.24	+0.6
3,027,087	+	DZA65_RS14105	0.25	+0.1
3,027,087	+	DZA65_RS14105	0.25	-2.7
3,027,087	+	DZA65_RS14105	0.25	-0.0
3,027,087	+	DZA65_RS14105	0.25	+0.8
3,027,088	-	DZA65_RS14105	0.25	+4.5
3,027,088	-	DZA65_RS14105	0.25	-1.2
3,027,140	+	DZA65_RS14105	0.51	-0.6
3,027,141	-	DZA65_RS14105	0.52	-0.5
3,027,141	-	DZA65_RS14105	0.52	+0.1
3,027,193	+	DZA65_RS14105	0.78	+2.6
3,027,194	-	DZA65_RS14105	0.78	-0.7
3,027,211	+	DZA65_RS14105	0.87	-0.0
3,027,229	+			-0.9
3,027,230	-			-1.1
3,027,230	-			+2.4
3,027,230	-			-2.3
3,027,230	-			+1.1
3,027,230	-			-0.0
3,027,230	-			-0.6
3,027,283	+			+0.4
3,027,283	+			+0.2
3,027,283	+			+0.4
3,027,283	+			+0.2
3,027,283	+			-0.3
3,027,283	+			-0.4
3,027,283	+			-1.5
3,027,283	+			-0.6
3,027,284	-			-0.0
3,027,284	-			+0.4
3,027,284	-			+0.4
3,027,284	-			-0.6
3,027,284	-			+0.1
3,027,284	-			+2.1
3,027,284	-			+0.4
3,027,284	-			-0.5
3,027,284	-			-0.9
3,027,376	+			+0.7
3,027,377	-			-0.3
3,027,510	-			+1.2
3,027,510	-			-1.2
3,027,532	+			+1.4
3,027,532	+			+3.1
3,027,532	+			-0.2
3,027,532	+			-2.9
3,027,533	-			+0.2
3,027,533	-			+0.1
3,027,533	-			+0.4
3,027,535	-			+0.4
3,027,575	+			-1.2
3,027,586	+			-0.9
3,027,618	+			-0.9
3,027,621	-			+0.5
3,027,621	-			-0.2
3,027,621	-			+2.0
3,027,621	-			+1.0
3,027,636	+			+0.1
3,027,636	+			-0.4
3,027,643	-			+0.1
3,027,664	+			+2.0
3,027,664	+			+0.5
3,027,665	-			-1.2
3,027,665	-			-1.5
3,027,676	-			+0.8
3,027,677	+			+0.4
3,027,677	+			+2.9
3,027,678	-			-0.2
3,027,678	-			+1.4
3,027,678	-			+0.2
3,027,678	-			-2.1
3,027,717	+			+0.8
3,027,718	-			+3.5
3,027,732	+			-1.0
3,027,733	-			-2.3
3,027,806	+			-0.2
3,027,806	+			-1.0
3,027,814	+			-2.2
3,027,814	+			-0.9
3,027,814	+			+0.8
3,027,815	-			-1.9
3,027,815	-			-1.5
3,027,815	-			+0.2
3,027,818	+			-1.8
3,027,818	+			-0.2
3,027,818	+			+0.4
3,027,818	+			+0.4
3,027,819	-			-2.2
3,027,819	-			+5.9
3,027,819	-			+1.4
3,027,833	+			-0.6
3,027,854	+			+2.2
3,027,855	-			-0.9
3,027,920	+			-2.8
3,027,920	+			-0.6
3,027,921	-			-1.3
3,027,955	+			-0.5
3,027,955	+			+0.4
3,027,955	+			-0.8
3,027,956	-			+1.4
3,027,961	+			+1.1
3,027,961	+			-1.2
3,027,962	-			-1.2
3,027,962	-			-0.9
3,028,059	-	DZA65_RS14110	0.16	-0.3
3,028,124	+	DZA65_RS14110	0.21	+0.1
3,028,124	+	DZA65_RS14110	0.21	-0.9
3,028,125	-	DZA65_RS14110	0.21	+0.5
3,028,125	-	DZA65_RS14110	0.21	+0.6
3,028,125	-	DZA65_RS14110	0.21	+0.7
3,028,125	-	DZA65_RS14110	0.21	+4.4
3,028,130	+	DZA65_RS14110	0.21	-0.8
3,028,160	+	DZA65_RS14110	0.24	+1.4
3,028,160	+	DZA65_RS14110	0.24	+0.1
3,028,161	-	DZA65_RS14110	0.24	-1.2
3,028,161	-	DZA65_RS14110	0.24	-1.8
3,028,161	-	DZA65_RS14110	0.24	-1.0
3,028,161	-	DZA65_RS14110	0.24	-0.6
3,028,161	-	DZA65_RS14110	0.24	+0.1
3,028,161	-	DZA65_RS14110	0.24	-0.8
3,028,161	-	DZA65_RS14110	0.24	-0.3
3,028,161	-	DZA65_RS14110	0.24	+0.4
3,028,168	+	DZA65_RS14110	0.24	+0.8
3,028,169	-	DZA65_RS14110	0.24	+1.4
3,028,169	-	DZA65_RS14110	0.24	+0.9
3,028,169	-	DZA65_RS14110	0.24	-1.7
3,028,169	-	DZA65_RS14110	0.24	-0.9
3,028,172	-	DZA65_RS14110	0.24	-1.4
3,028,172	-	DZA65_RS14110	0.24	-0.4
3,028,172	-	DZA65_RS14110	0.24	+2.7
3,028,178	+	DZA65_RS14110	0.25	-0.6
3,028,178	+	DZA65_RS14110	0.25	-1.2
3,028,178	+	DZA65_RS14110	0.25	-2.1
3,028,179	-	DZA65_RS14110	0.25	-0.6
3,028,179	-	DZA65_RS14110	0.25	-2.1
3,028,179	-	DZA65_RS14110	0.25	+1.0
3,028,179	-	DZA65_RS14110	0.25	-2.6
3,028,242	+	DZA65_RS14110	0.29	+0.0
3,028,242	+	DZA65_RS14110	0.29	+0.1
3,028,242	+	DZA65_RS14110	0.29	-0.6
3,028,242	+	DZA65_RS14110	0.29	-0.2
3,028,243	-	DZA65_RS14110	0.29	+0.4
3,028,243	-	DZA65_RS14110	0.29	-0.8
3,028,243	-	DZA65_RS14110	0.29	-1.2
3,028,245	-	DZA65_RS14110	0.29	+2.8
3,028,406	+	DZA65_RS14110	0.41	-2.4
3,028,498	-	DZA65_RS14110	0.47	-0.2
3,028,510	+	DZA65_RS14110	0.48	+0.4
3,028,510	+	DZA65_RS14110	0.48	+1.2
3,028,511	-	DZA65_RS14110	0.48	+0.6
3,028,511	-	DZA65_RS14110	0.48	-0.2
3,028,511	-	DZA65_RS14110	0.48	-0.5
3,028,511	-	DZA65_RS14110	0.48	-0.6
3,028,572	+	DZA65_RS14110	0.52	+0.4
3,028,572	+	DZA65_RS14110	0.52	-1.4
3,028,572	+	DZA65_RS14110	0.52	+2.4
3,028,572	+	DZA65_RS14110	0.52	+0.8
3,028,573	-	DZA65_RS14110	0.52	-0.1
3,028,573	-	DZA65_RS14110	0.52	+2.3
3,028,573	-	DZA65_RS14110	0.52	-0.8
3,028,573	-	DZA65_RS14110	0.52	-0.5
3,028,652	+	DZA65_RS14110	0.58	-1.5
3,028,653	-	DZA65_RS14110	0.58	+3.0
3,028,653	-	DZA65_RS14110	0.58	-1.6
3,028,653	-	DZA65_RS14110	0.58	+0.4
3,028,761	-	DZA65_RS14110	0.65	+0.4
3,028,787	+	DZA65_RS14110	0.67	-0.3
3,028,787	+	DZA65_RS14110	0.67	-0.5
3,028,787	+	DZA65_RS14110	0.67	+1.1
3,028,788	-	DZA65_RS14110	0.67	-0.8
3,028,792	+	DZA65_RS14110	0.68	+0.4
3,028,793	-	DZA65_RS14110	0.68	-0.3
3,028,793	-	DZA65_RS14110	0.68	-0.9
3,028,808	+	DZA65_RS14110	0.69	-0.2
3,028,845	+	DZA65_RS14110	0.71	+0.4
3,028,845	+	DZA65_RS14110	0.71	-1.1
3,028,845	+	DZA65_RS14110	0.71	-1.6
3,028,845	+	DZA65_RS14110	0.71	+0.4
3,028,845	+	DZA65_RS14110	0.71	+2.7
3,028,845	+			-0.4
3,028,845	+	DZA65_RS14110	0.71	+0.7
3,028,845	+	DZA65_RS14110	0.71	-0.9
3,028,845	+	DZA65_RS14110	0.71	-2.3
3,028,846	-	DZA65_RS14110	0.71	+0.1
3,028,846	-	DZA65_RS14110	0.71	-0.6
3,028,846	-	DZA65_RS14110	0.71	+0.8
3,028,846	-	DZA65_RS14110	0.71	-1.2
3,028,846	-	DZA65_RS14110	0.71	+0.4
3,028,846	-	DZA65_RS14110	0.71	-1.2
3,028,846	-	DZA65_RS14110	0.71	-1.5
3,028,847	+	DZA65_RS14110	0.71	-1.4
3,028,848	-	DZA65_RS14110	0.71	-0.1
3,028,848	-	DZA65_RS14110	0.71	-0.3
3,028,848	-	DZA65_RS14110	0.71	-0.9
3,028,912	+	DZA65_RS14110	0.76	-0.2
3,028,926	+	DZA65_RS14110	0.77	+1.0
3,028,926	+	DZA65_RS14110	0.77	+0.1
3,028,926	+	DZA65_RS14110	0.77	-1.9
3,028,926	+	DZA65_RS14110	0.77	-0.3
3,028,926	+	DZA65_RS14110	0.77	+1.4
3,028,926	+	DZA65_RS14110	0.77	-0.2
3,028,926	+	DZA65_RS14110	0.77	-1.2
3,028,926	+	DZA65_RS14110	0.77	-2.9
3,028,927	-	DZA65_RS14110	0.77	-0.6
3,028,927	-	DZA65_RS14110	0.77	+1.4
3,028,927	-	DZA65_RS14110	0.77	+1.6
3,028,927	-	DZA65_RS14110	0.77	-0.8
3,028,927	-	DZA65_RS14110	0.77	-1.5
3,028,927	-	DZA65_RS14110	0.77	+1.2
3,028,955	-	DZA65_RS14110	0.79	+0.7
3,028,955	-	DZA65_RS14110	0.79	-1.2
3,028,955	-	DZA65_RS14110	0.79	-0.9
3,028,955	-	DZA65_RS14110	0.79	-0.1
3,028,955	-	DZA65_RS14110	0.79	+2.4
3,028,955	-	DZA65_RS14110	0.79	-1.4
3,028,955	-	DZA65_RS14110	0.79	-0.6
3,028,959	-	DZA65_RS14110	0.79	+5.3
3,028,959	-	DZA65_RS14110	0.79	-0.8
3,029,052	+	DZA65_RS14110	0.86	-0.8
3,029,052	+	DZA65_RS14110	0.86	-0.3
3,029,052	+	DZA65_RS14110	0.86	-0.2
3,029,052	+	DZA65_RS14110	0.86	-0.2
3,029,052	+	DZA65_RS14110	0.86	-0.7
3,029,052	+	DZA65_RS14110	0.86	-0.9
3,029,052	+	DZA65_RS14110	0.86	-0.4
3,029,052	+	DZA65_RS14110	0.86	-0.5
3,029,053	-	DZA65_RS14110	0.86	-0.6
3,029,053	-	DZA65_RS14110	0.86	-1.9
3,029,053	-	DZA65_RS14110	0.86	-1.9
3,029,053	-	DZA65_RS14110	0.86	+0.4
3,029,053	-	DZA65_RS14110	0.86	-0.7
3,029,053	-	DZA65_RS14110	0.86	-0.2
3,029,053	-	DZA65_RS14110	0.86	+0.8
3,029,053	-	DZA65_RS14110	0.86	-0.6
3,029,053	-	DZA65_RS14110	0.86	-0.2
3,029,053	-	DZA65_RS14110	0.86	-0.8
3,029,054	+	DZA65_RS14110	0.86	-1.3
3,029,054	+	DZA65_RS14110	0.86	-1.3
3,029,055	-	DZA65_RS14110	0.86	+0.9
3,029,055	-	DZA65_RS14110	0.86	-0.1
3,029,055	-	DZA65_RS14110	0.86	+0.4
3,029,055	-	DZA65_RS14110	0.86	+0.1
3,029,055	-	DZA65_RS14110	0.86	-0.2
3,029,055	-	DZA65_RS14110	0.86	+0.3
3,029,055	-	DZA65_RS14110	0.86	+1.1
3,029,055	-	DZA65_RS14110	0.86	-0.6
3,029,055	-	DZA65_RS14110	0.86	+0.2
3,029,055	-	DZA65_RS14110	0.86	-0.1
3,029,055	-	DZA65_RS14110	0.86	+0.2
3,029,057	+	DZA65_RS14110	0.86	-2.2
3,029,057	+	DZA65_RS14110	0.86	-1.4
3,029,057	+	DZA65_RS14110	0.86	-0.2
3,029,057	+	DZA65_RS14110	0.86	+0.7
3,029,057	+	DZA65_RS14110	0.86	-0.9
3,029,057	+	DZA65_RS14110	0.86	-0.6
3,029,057	+	DZA65_RS14110	0.86	-0.9
3,029,057	+	DZA65_RS14110	0.86	+0.4
3,029,057	+	DZA65_RS14110	0.86	-0.8
3,029,057	+	DZA65_RS14110	0.86	-1.4
3,029,057	+	DZA65_RS14110	0.86	+1.8
3,029,057	+	DZA65_RS14110	0.86	+1.4
3,029,058	-	DZA65_RS14110	0.86	+0.3
3,029,058	-	DZA65_RS14110	0.86	-0.4
3,029,058	-	DZA65_RS14110	0.86	+0.6
3,029,058	-	DZA65_RS14110	0.86	+0.4
3,029,058	-	DZA65_RS14110	0.86	-1.0
3,029,058	-	DZA65_RS14110	0.86	-0.2
3,029,058	-	DZA65_RS14110	0.86	+1.4
3,029,058	-	DZA65_RS14110	0.86	-1.4
3,029,058	-	DZA65_RS14110	0.86	+0.4
3,029,058	-	DZA65_RS14110	0.86	-0.2
3,029,058	-	DZA65_RS14110	0.86	+0.4
3,029,058	-	DZA65_RS14110	0.86	-1.4
3,029,058	-	DZA65_RS14110	0.86	+0.4
3,029,058	-	DZA65_RS14110	0.86	+0.6
3,029,078	+	DZA65_RS14110	0.87	-0.6
3,029,079	-	DZA65_RS14110	0.87	+0.1
3,029,079	-	DZA65_RS14110	0.87	-0.7
3,029,079	-	DZA65_RS14110	0.87	-2.2
3,029,079	-	DZA65_RS14110	0.87	-0.7
3,029,079	-	DZA65_RS14110	0.87	+1.4
3,029,079	-	DZA65_RS14110	0.87	-1.5
3,029,079	-	DZA65_RS14110	0.87	-0.9
3,029,079	-	DZA65_RS14110	0.87	-0.2
3,029,107	-	DZA65_RS14110	0.89	-1.4
3,029,107	-	DZA65_RS14110	0.89	-0.9
3,029,108	+	DZA65_RS14110	0.89	-0.9
3,029,108	+	DZA65_RS14110	0.89	+0.2
3,029,108	+	DZA65_RS14110	0.89	-1.6
3,029,108	+	DZA65_RS14110	0.89	+0.2
3,029,108	+	DZA65_RS14110	0.89	-0.1
3,029,109	-	DZA65_RS14110	0.90	-0.0
3,029,109	-	DZA65_RS14110	0.90	+0.7
3,029,109	-	DZA65_RS14110	0.90	-0.4
3,029,121	-			-0.6
3,029,230	-			+0.7
3,029,237	+			-0.4
3,029,244	-			+1.4
3,029,256	+			-1.2
3,029,282	+			+1.4
3,029,282	+			-0.1
3,029,283	-			-0.9
3,029,283	-			+1.4
3,029,323	+			-1.6
3,029,364	+			-1.4
3,029,364	+			-1.3
3,029,423	-			-0.3
3,029,439	+			-0.8
3,029,439	+			-0.9
3,029,439	+			-1.6
3,029,440	-			-0.3
3,029,440	-			-0.5
3,029,440	-			-1.1
3,029,440	-			-0.6
3,029,440	-			-0.8
3,029,440	-			-0.0
3,029,444	-			-1.4
3,029,444	-			-0.4
3,029,444	-			+0.9
3,029,444	-			-0.3
3,029,444	-			+0.2
3,029,471	-			-1.8
3,029,471	-			-0.6
3,029,471	-			+0.2
3,029,471	-			-0.6
3,029,473	+			-1.4
3,029,473	+			-0.2
3,029,474	-			-0.6
3,029,480	-			-0.8
3,029,480	-			-0.6
3,029,480	-			+0.9
3,029,482	-			+0.8
3,029,482	-			-0.2
3,029,482	-			-0.7
3,029,500	-			-2.2
3,029,503	+			-0.4
3,029,504	-			-1.0
3,029,504	-			+0.4
3,029,504	-			-0.9
3,029,529	+			+1.9
3,029,529	+			-1.6
3,029,529	+			+1.1
3,029,529	+			+0.4
3,029,533	-			-0.2
3,029,533	-			-0.2
3,029,562	+	DZA65_RS14115	0.12	+0.1
3,029,629	+	DZA65_RS14115	0.29	+0.0
3,029,679	-	DZA65_RS14115	0.43	+0.8
3,029,679	-	DZA65_RS14115	0.43	-2.1
3,029,687	+	DZA65_RS14115	0.45	-0.0
3,029,687	+	DZA65_RS14115	0.45	-1.6
3,029,688	-	DZA65_RS14115	0.45	-0.6
3,029,688	-	DZA65_RS14115	0.45	-1.7
3,029,688	-	DZA65_RS14115	0.45	-0.0
3,029,688	-	DZA65_RS14115	0.45	+2.1
3,029,688	-			+1.4
3,029,709	+	DZA65_RS14115	0.51	-0.9
3,029,730	+	DZA65_RS14115	0.56	-0.2
3,029,754	+	DZA65_RS14115	0.62	-1.5
3,029,754	+	DZA65_RS14115	0.62	-1.4
3,029,796	+	DZA65_RS14115	0.74	+1.8
3,029,832	+	DZA65_RS14115	0.83	+0.8
3,029,833	-	DZA65_RS14115	0.83	-1.2
3,029,833	-	DZA65_RS14115	0.83	-0.6
3,029,872	+			+1.0
3,029,877	+			-0.2
3,029,878	-			-2.5
3,029,892	-			-0.6
3,029,923	+			-1.1
3,029,923	+			+1.0
3,029,923	+			-0.9
3,029,924	-			-1.2
3,029,924	-			-1.3
3,029,924	-			-2.2
3,029,927	-			-0.7
3,029,944	-			+2.6
3,029,944	-			+0.2
3,029,967	+			+0.4
3,029,967	+			-0.2
3,029,967	+			+0.6
3,029,968	-			+0.4
3,029,968	-			-1.9
3,030,001	-			-0.9
3,030,001	-			+0.2
3,030,001	-			-1.2
3,030,003	-			+0.6
3,030,003	-			-0.4
3,030,003	-			-1.6
3,030,003	-			-0.7
3,030,003	-			+0.1
3,030,005	-			+0.7
3,030,014	-			+4.0
3,030,014	-			+1.1
3,030,184	-			-0.9
3,030,199	-			-0.2
3,030,207	-			+0.4
3,030,207	-			+0.2
3,030,207	-			-0.4

Or see this region's nucleotide sequence