Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14080

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,019,546	+		DZA65_RS14075	0.52	-0.2
3,019,546	+		DZA65_RS14075	0.52	-0.6
3,019,546	+		DZA65_RS14075	0.52	-2.3
3,019,546	+		DZA65_RS14075	0.52	-1.4
3,019,546	+		DZA65_RS14075	0.52	-0.4
3,019,547	-		DZA65_RS14075	0.52	-1.0
3,019,547	-		DZA65_RS14075	0.52	-0.7
3,019,547	-		DZA65_RS14075	0.52	-1.3
3,019,547	-		DZA65_RS14075	0.52	+0.1
3,019,612	+		DZA65_RS14075	0.55	-1.8
3,019,612	+		DZA65_RS14075	0.55	+0.2
3,019,613	-		DZA65_RS14075	0.55	+0.4
3,019,636	+				-0.4
3,019,678	+		DZA65_RS14075	0.58	-0.4
3,019,697	-		DZA65_RS14075	0.59	-1.2
3,019,697	-		DZA65_RS14075	0.59	+1.2
3,019,846	+		DZA65_RS14075	0.67	-0.7
3,019,846	+		DZA65_RS14075	0.67	-2.2
3,019,847	-		DZA65_RS14075	0.67	-0.6
3,019,847	-		DZA65_RS14075	0.67	-0.6
3,019,847	-		DZA65_RS14075	0.67	-0.6
3,019,847	-		DZA65_RS14075	0.67	-2.6
3,019,847	-		DZA65_RS14075	0.67	-1.3
3,019,847	-		DZA65_RS14075	0.67	+0.6
3,020,003	-		DZA65_RS14075	0.74	-1.4
3,020,032	+		DZA65_RS14075	0.76	-0.6
3,020,033	-		DZA65_RS14075	0.76	-0.6
3,020,033	-		DZA65_RS14075	0.76	-1.9
3,020,099	+		DZA65_RS14075	0.79	+1.1
3,020,099	+		DZA65_RS14075	0.79	-1.8
3,020,099	+		DZA65_RS14075	0.79	-1.9
3,020,099	+		DZA65_RS14075	0.79	-1.2
3,020,099	+				-0.0
3,020,100	-		DZA65_RS14075	0.79	-0.2
3,020,100	-		DZA65_RS14075	0.79	-1.4
3,020,100	-		DZA65_RS14075	0.79	-0.6
3,020,100	-		DZA65_RS14075	0.79	-1.9
3,020,100	-		DZA65_RS14075	0.79	-0.6
3,020,100	-		DZA65_RS14075	0.79	-0.1
3,020,100	-		DZA65_RS14075	0.79	-1.5
3,020,173	+		DZA65_RS14075	0.83	-0.6
3,020,173	+		DZA65_RS14075	0.83	+1.1
3,020,173	+		DZA65_RS14075	0.83	-0.0
3,020,173	+		DZA65_RS14075	0.83	-0.6
3,020,173	+		DZA65_RS14075	0.83	-1.9
3,020,173	+		DZA65_RS14075	0.83	+0.2
3,020,173	+		DZA65_RS14075	0.83	-0.0
3,020,174	-		DZA65_RS14075	0.83	-0.9
3,020,174	-		DZA65_RS14075	0.83	-0.2
3,020,175	+		DZA65_RS14075	0.83	+1.4
3,020,175	+		DZA65_RS14075	0.83	+0.1
3,020,175	+		DZA65_RS14075	0.83	+0.2
3,020,175	+		DZA65_RS14075	0.83	-2.1
3,020,175	+		DZA65_RS14075	0.83	-0.8
3,020,175	+		DZA65_RS14075	0.83	-0.9
3,020,175	+		DZA65_RS14075	0.83	-0.1
3,020,175	+		DZA65_RS14075	0.83	-3.4
3,020,175	+		DZA65_RS14075	0.83	-4.1
3,020,175	+		DZA65_RS14075	0.83	-0.4
3,020,176	-		DZA65_RS14075	0.83	-0.9
3,020,176	-		DZA65_RS14075	0.83	+0.4
3,020,176	-		DZA65_RS14075	0.83	-1.3
3,020,176	-		DZA65_RS14075	0.83	-1.2
3,020,176	-		DZA65_RS14075	0.83	-0.9
3,020,176	-		DZA65_RS14075	0.83	-1.3
3,020,213	-		DZA65_RS14075	0.85	-2.2
3,020,213	-		DZA65_RS14075	0.85	-1.2
3,020,213	-		DZA65_RS14075	0.85	-2.3
3,020,213	-		DZA65_RS14075	0.85	-1.9
3,020,214	+		DZA65_RS14075	0.85	+0.8
3,020,215	-		DZA65_RS14075	0.85	-0.9
3,020,215	-		DZA65_RS14075	0.85	-1.3
3,020,215	-		DZA65_RS14075	0.85	-1.4
3,020,215	-		DZA65_RS14075	0.85	-1.9
3,020,240	-		DZA65_RS14075	0.86	-0.2
3,020,266	+		DZA65_RS14075	0.87	-1.2
3,020,266	+		DZA65_RS14075	0.87	-0.9
3,020,267	-		DZA65_RS14075	0.87	-1.1
3,020,267	-		DZA65_RS14075	0.87	-1.8
3,020,267	-		DZA65_RS14075	0.87	-1.9
3,020,267	-		DZA65_RS14075	0.87	-0.8
3,020,267	-		DZA65_RS14075	0.87	-0.2
3,020,269	+		DZA65_RS14075	0.88	-1.3
3,020,270	-		DZA65_RS14075	0.88	+0.6
3,020,321	+				-2.6
3,020,322	-				-1.2
3,020,324	+				+0.4
3,020,324	+				-0.6
3,020,324	+				-2.3
3,020,324	+				+0.8
3,020,325	-				-1.6
3,020,325	-				-0.6
3,020,325	-				+0.8
3,020,325	-				-2.3
3,020,325	-				-2.3
3,020,325	-				-0.7
3,020,332	+				-1.8
3,020,346	-				-1.7
3,020,377	+				-1.6
3,020,377	+				-1.9
3,020,377	+				-0.6
3,020,378	-				-0.2
3,020,399	+				-1.6
3,020,400	-				-1.6
3,020,447	+				-0.2
3,020,447	+				-0.9
3,020,447	+				-3.2
3,020,447	+				-0.7
3,020,448	-				-2.1
3,020,604	+				-0.6
3,020,604	+				-1.4
3,020,604	+				-2.1
3,020,604	+				-1.3
3,020,604	+				-0.2
3,020,605	-				+0.4
3,020,605	-				-2.2
3,020,605	-				-0.6
3,020,605	-				-0.6
3,020,607	+				+1.4
3,020,607	+				-0.6
3,020,608	-				+0.4
3,020,739	+		DZA65_RS14080	0.18	-0.2
3,020,782	-		DZA65_RS14080	0.22	-0.6
3,020,800	+		DZA65_RS14080	0.24	-1.2
3,020,814	+		DZA65_RS14080	0.25	-0.0
3,020,815	-		DZA65_RS14080	0.25	-0.6
3,020,815	-		DZA65_RS14080	0.25	-1.2
3,020,935	+		DZA65_RS14080	0.36	-2.9
3,020,936	-		DZA65_RS14080	0.36	-0.6
3,020,962	+		DZA65_RS14080	0.38	+1.4
3,020,962	+		DZA65_RS14080	0.38	-2.6
3,020,963	-		DZA65_RS14080	0.38	-0.9
3,020,963	-		DZA65_RS14080	0.38	-3.6
3,020,963	-		DZA65_RS14080	0.38	-1.9
3,020,963	-		DZA65_RS14080	0.38	-0.9
3,020,968	+		DZA65_RS14080	0.38	-0.9
3,020,977	-		DZA65_RS14080	0.39	-3.6
3,020,995	+		DZA65_RS14080	0.41	-0.6
3,020,995	+		DZA65_RS14080	0.41	-2.3
3,020,995	+		DZA65_RS14080	0.41	-2.3
3,020,995	+		DZA65_RS14080	0.41	+4.7
3,020,995	+		DZA65_RS14080	0.41	+1.4
3,020,995	+		DZA65_RS14080	0.41	-0.1
3,020,996	-		DZA65_RS14080	0.41	-1.9
3,020,996	-		DZA65_RS14080	0.41	+1.8
3,021,048	+		DZA65_RS14080	0.46	-1.2
3,021,049	-		DZA65_RS14080	0.46	-1.8
3,021,049	-		DZA65_RS14080	0.46	-1.8
3,021,054	-		DZA65_RS14080	0.46	+0.1
3,021,054	-		DZA65_RS14080	0.46	-0.6
3,021,121	-		DZA65_RS14080	0.52	-1.8
3,021,164	+		DZA65_RS14080	0.56	-0.2
3,021,164	+		DZA65_RS14080	0.56	-0.2
3,021,164	+		DZA65_RS14080	0.56	+0.4
3,021,164	+		DZA65_RS14080	0.56	-2.1
3,021,165	-		DZA65_RS14080	0.56	-0.8
3,021,165	-		DZA65_RS14080	0.56	+0.6
3,021,165	-		DZA65_RS14080	0.56	-1.4
3,021,193	-		DZA65_RS14080	0.58	-0.2
3,021,210	+		DZA65_RS14080	0.60	-0.9
3,021,211	-		DZA65_RS14080	0.60	-0.2
3,021,211	-		DZA65_RS14080	0.60	-1.4
3,021,279	+		DZA65_RS14080	0.66	-0.9
3,021,280	-		DZA65_RS14080	0.66	+0.4
3,021,337	-		DZA65_RS14080	0.71	-2.1
3,021,360	+		DZA65_RS14080	0.73	-2.9
3,021,360	+		DZA65_RS14080	0.73	-0.9
3,021,360	+		DZA65_RS14080	0.73	-2.6
3,021,360	+		DZA65_RS14080	0.73	+0.2
3,021,360	+		DZA65_RS14080	0.73	+0.1
3,021,361	-		DZA65_RS14080	0.73	-0.6
3,021,361	-		DZA65_RS14080	0.73	-0.4
3,021,361	-		DZA65_RS14080	0.73	-0.1
3,021,361	-		DZA65_RS14080	0.73	-2.1
3,021,361	-		DZA65_RS14080	0.73	-1.6
3,021,363	+		DZA65_RS14080	0.73	-1.0
3,021,363	+		DZA65_RS14080	0.73	-0.6
3,021,363	+		DZA65_RS14080	0.73	-2.4
3,021,364	-		DZA65_RS14080	0.73	-1.6
3,021,399	+		DZA65_RS14080	0.77	-0.2
3,021,400	-		DZA65_RS14080	0.77	-1.1
3,021,400	-		DZA65_RS14080	0.77	-1.4
3,021,488	+		DZA65_RS14080	0.84	-0.9
3,021,581	+				-0.9
3,021,581	+				-0.2
3,021,582	-				-0.4
3,021,582	-				-1.4
3,021,628	-				+0.4
3,021,628	-				-1.8
3,021,628	-				-2.7
3,021,704	+				-2.2
3,021,704	+				-2.5
3,021,704	+				-1.8
3,021,705	-				-2.3
3,021,705	-				-0.2
3,021,710	+				-2.6
3,021,710	+				-2.5
3,021,710	+				-2.9
3,021,711	-				-1.8
3,021,729	-				+1.4
3,021,751	+		DZA65_RS14085	0.10	+0.4
3,021,752	-		DZA65_RS14085	0.10	-1.6
3,021,762	-		DZA65_RS14085	0.11	-1.6
3,021,762	-		DZA65_RS14085	0.11	+1.0
3,021,793	+		DZA65_RS14085	0.15	-1.8
3,021,867	+		DZA65_RS14085	0.23	-0.9
3,021,867	+		DZA65_RS14085	0.23	-0.2
3,021,867	+		DZA65_RS14085	0.23	-1.9
3,021,867	+		DZA65_RS14085	0.23	-0.6
3,021,867	+		DZA65_RS14085	0.23	-1.2
3,021,867	+				-1.6
3,021,868	-		DZA65_RS14085	0.23	-1.3
3,021,868	-		DZA65_RS14085	0.23	-0.9
3,021,868	-		DZA65_RS14085	0.23	-1.8
3,021,868	-		DZA65_RS14085	0.23	-1.2
3,021,868	-		DZA65_RS14085	0.23	-0.2
3,021,868	-		DZA65_RS14085	0.23	-0.2
3,021,888	+		DZA65_RS14085	0.26	+0.4
3,021,888	+		DZA65_RS14085	0.26	-1.9
3,021,888	+		DZA65_RS14085	0.26	-0.9
3,021,889	-		DZA65_RS14085	0.26	-2.9
3,021,898	+		DZA65_RS14085	0.27	-1.4
3,021,898	+		DZA65_RS14085	0.27	+0.5
3,021,911	+		DZA65_RS14085	0.28	-1.9
3,021,912	-		DZA65_RS14085	0.28	-0.9
3,021,923	+		DZA65_RS14085	0.30	-0.8
3,021,923	+		DZA65_RS14085	0.30	-2.9
3,021,924	-		DZA65_RS14085	0.30	-2.8
3,021,924	-		DZA65_RS14085	0.30	-2.2
3,021,924	-		DZA65_RS14085	0.30	-0.9
3,021,927	+		DZA65_RS14085	0.30	-1.4
3,021,927	+		DZA65_RS14085	0.30	-1.2
3,021,927	+		DZA65_RS14085	0.30	-2.4
3,021,927	+		DZA65_RS14085	0.30	-0.0
3,021,927	+		DZA65_RS14085	0.30	-0.8
3,021,927	+		DZA65_RS14085	0.30	-2.2
3,021,927	+		DZA65_RS14085	0.30	+0.4
3,021,928	-		DZA65_RS14085	0.30	-1.6
3,021,928	-		DZA65_RS14085	0.30	-0.0
3,021,928	-		DZA65_RS14085	0.30	-0.9
3,021,928	-		DZA65_RS14085	0.30	-2.4
3,021,928	-		DZA65_RS14085	0.30	-2.9
3,021,928	-		DZA65_RS14085	0.30	-0.9
3,021,928	-		DZA65_RS14085	0.30	-2.3
3,022,146	-		DZA65_RS14085	0.55	-0.5
3,022,163	-		DZA65_RS14085	0.57	-1.8
3,022,179	+		DZA65_RS14085	0.58	-0.6
3,022,184	+		DZA65_RS14085	0.59	-2.9
3,022,186	+		DZA65_RS14085	0.59	-2.5
3,022,186	+		DZA65_RS14085	0.59	-2.9
3,022,186	+		DZA65_RS14085	0.59	-0.4
3,022,186	+		DZA65_RS14085	0.59	-1.6
3,022,186	+		DZA65_RS14085	0.59	-0.9
3,022,186	+		DZA65_RS14085	0.59	-1.2
3,022,186	+		DZA65_RS14085	0.59	-1.9
3,022,186	+		DZA65_RS14085	0.59	-1.2
3,022,186	+		DZA65_RS14085	0.59	-1.1
3,022,187	-		DZA65_RS14085	0.59	-0.9
3,022,187	-		DZA65_RS14085	0.59	-1.6
3,022,187	-		DZA65_RS14085	0.59	-0.2
3,022,187	-		DZA65_RS14085	0.59	-1.7
3,022,187	-		DZA65_RS14085	0.59	-1.6
3,022,187	-		DZA65_RS14085	0.59	-0.9
3,022,302	+		DZA65_RS14085	0.72	-1.4
3,022,302	+		DZA65_RS14085	0.72	-2.5
3,022,303	-		DZA65_RS14085	0.72	-2.8
3,022,303	-		DZA65_RS14085	0.72	-1.9
3,022,303	-		DZA65_RS14085	0.72	-0.9
3,022,305	+		DZA65_RS14085	0.73	+0.2
3,022,324	+		DZA65_RS14085	0.75	-1.4
3,022,324	+		DZA65_RS14085	0.75	-2.1
3,022,324	+		DZA65_RS14085	0.75	-1.8
3,022,324	+		DZA65_RS14085	0.75	-2.6
3,022,324	+		DZA65_RS14085	0.75	-2.4
3,022,324	+		DZA65_RS14085	0.75	-0.2
3,022,324	+		DZA65_RS14085	0.75	-1.9
3,022,324	+		DZA65_RS14085	0.75	-0.7
3,022,324	+		DZA65_RS14085	0.75	-2.7
3,022,324	+		DZA65_RS14085	0.75	-1.2
3,022,324	+		DZA65_RS14085	0.75	-0.2
3,022,324	+		DZA65_RS14085	0.75	-0.9
3,022,325	-		DZA65_RS14085	0.75	-0.9
3,022,325	-		DZA65_RS14085	0.75	-0.6
3,022,325	-		DZA65_RS14085	0.75	-2.2
3,022,325	-		DZA65_RS14085	0.75	+0.4
3,022,325	-		DZA65_RS14085	0.75	+0.2
3,022,325	-		DZA65_RS14085	0.75	-1.2
3,022,325	-		DZA65_RS14085	0.75	-3.3
3,022,325	-		DZA65_RS14085	0.75	-1.1
3,022,325	-		DZA65_RS14085	0.75	-2.4
3,022,325	-		DZA65_RS14085	0.75	-3.3
3,022,325	-		DZA65_RS14085	0.75	-0.6
3,022,325	-				-2.3
3,022,326	+		DZA65_RS14085	0.75	-2.3
3,022,337	+		DZA65_RS14085	0.76	-1.3
3,022,337	+		DZA65_RS14085	0.76	+0.4
3,022,338	-		DZA65_RS14085	0.76	-1.8
3,022,338	-		DZA65_RS14085	0.76	-1.2
3,022,338	-		DZA65_RS14085	0.76	-1.4
3,022,338	-		DZA65_RS14085	0.76	-1.4
3,022,338	-		DZA65_RS14085	0.76	+1.0
3,022,338	-		DZA65_RS14085	0.76	-2.3
3,022,339	+		DZA65_RS14085	0.76	+0.3
3,022,340	-		DZA65_RS14085	0.77	-1.6
3,022,404	-		DZA65_RS14085	0.84	-2.0
3,022,412	+		DZA65_RS14085	0.85	-0.2
3,022,412	+		DZA65_RS14085	0.85	-0.7
3,022,413	-		DZA65_RS14085	0.85	-1.2
3,022,413	-		DZA65_RS14085	0.85	-1.4
3,022,413	-		DZA65_RS14085	0.85	-1.8
3,022,413	-		DZA65_RS14085	0.85	-2.0
3,022,413	-		DZA65_RS14085	0.85	-1.8
3,022,413	-				-2.1
3,022,439	+		DZA65_RS14085	0.88	-3.0
3,022,439	+		DZA65_RS14085	0.88	-0.6
3,022,462	+				-1.4
3,022,462	+				-0.9
3,022,462	+				-2.7
3,022,463	-				-1.9
3,022,463	-				-1.2
3,022,463	-				-0.9
3,022,506	+				-1.7
3,022,506	+				-3.2
3,022,506	+				-0.2
3,022,506	+				-2.0
3,022,506	+				-4.3
3,022,506	+				-0.9
3,022,506	+				-0.9
3,022,506	+				+2.0
3,022,506	+				-1.0
3,022,507	-				+1.4
3,022,507	-				-1.1
3,022,507	-				-1.7
3,022,507	-				-0.6
3,022,507	-				-1.9
3,022,507	-				+0.4
3,022,508	+				-1.8
3,022,508	+				-2.1
3,022,508	+				-1.2
3,022,508	+				-2.3
3,022,508	+				-2.4
3,022,509	-				+0.6
3,022,515	+				-0.9
3,022,515	+				-2.1
3,022,515	+				-1.4
3,022,515	+				-2.9
3,022,515	+				-2.2
3,022,516	-				-1.2
3,022,516	-				-0.2
3,022,516	-				-1.8
3,022,517	+				-1.1
3,022,517	+				-2.7
3,022,528	+				+0.1
3,022,536	+				-1.8
3,022,536	+				-1.7
3,022,537	-				-0.2
3,022,537	-				-1.2
3,022,537	-				-3.7
3,022,538	+				-2.2
3,022,538	+				+0.7
3,022,538	+				-2.9
3,022,539	-				-3.2
3,022,539	-				-0.4
3,022,559	-				-1.6
3,022,560	+				-1.4
3,022,560	+				-1.8
3,022,561	-				-1.9
3,022,561	-				-1.4
3,022,561	-				-0.1
3,022,561	-				-1.3
3,022,561	-				-1.7
3,022,561	-				-0.5
3,022,561	-				-1.6
3,022,564	+				-0.1
3,022,567	+				-0.9
3,022,568	-				-0.6
3,022,590	+				-1.8
3,022,591	-				+0.8
3,022,603	-				-0.9