Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12820

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,746,705	+		DZA65_RS12815	0.81	-0.8
2,746,705	+		DZA65_RS12815	0.81	-1.4
2,746,706	-		DZA65_RS12815	0.81	+0.2
2,746,706	-		DZA65_RS12815	0.81	-0.4
2,746,706	-		DZA65_RS12815	0.81	+0.2
2,746,706	-		DZA65_RS12815	0.81	-0.7
2,746,750	-		DZA65_RS12815	0.83	-1.6
2,746,750	-		DZA65_RS12815	0.83	-0.8
2,746,972	-				+1.2
2,747,078	+				-0.0
2,747,079	-				+0.2
2,747,079	-				-0.6
2,747,079	-				+1.2
2,747,079	-				+1.2
2,747,112	+				-0.2
2,747,112	+				+1.2
2,747,112	+				-0.3
2,747,113	-				-2.4
2,747,113	-				-1.4
2,747,113	-				-0.1
2,747,201	+				-0.7
2,747,201	+				+0.2
2,747,202	-				+0.2
2,747,202	-				-0.2
2,747,262	-				-0.6
2,747,262	-				-0.4
2,747,262	-				-0.1
2,747,262	-				-0.4
2,747,262	-				+0.9
2,747,312	+				+1.2
2,747,319	+				-0.6
2,747,435	+				-0.7
2,747,478	+				-1.6
2,747,478	+				-2.3
2,747,480	+				-1.8
2,747,480	+				+1.0
2,747,480	+				+0.0
2,747,480	+				-0.1
2,747,480	+				+0.4
2,747,480	+				-2.9
2,747,480	+				+2.2
2,747,480	+				+0.8
2,747,480	+				+0.2
2,747,480	+				+0.8
2,747,480	+				+1.9
2,747,481	-				-0.8
2,747,481	-				+1.2
2,747,481	-				+0.8
2,747,481	-				+1.2
2,747,481	-				-1.0
2,747,481	-				-1.4
2,747,502	+				-0.4
2,747,502	+				-0.4
2,747,502	+				+0.6
2,747,502	+				-2.0
2,747,503	-				-2.0
2,747,503	-				-1.0
2,747,506	+				-0.6
2,747,507	-				-0.8
2,747,507	-				-1.6
2,747,513	+				-0.7
2,747,513	+				+0.5
2,747,527	-				-0.6
2,747,527	-				-0.2
2,747,534	+				-0.4
2,747,561	-				-0.4
2,747,608	+				-1.2
2,747,608	+				+0.8
2,747,608	+				+0.8
2,747,608	+				-0.4
2,747,609	-				+0.2
2,747,644	+				-0.4
2,747,644	+				-0.4
2,747,644	+				-1.6
2,747,644	+				-0.8
2,747,644	+				+0.2
2,747,644	+				+0.8
2,747,645	-				-2.3
2,747,645	-				+1.2
2,747,645	-				+0.3
2,747,645	-				-0.7
2,747,645	-				-1.4
2,747,645	-				-0.9
2,747,648	+				-1.5
2,747,648	+				-0.2
2,747,649	-				-2.4
2,747,649	-				-0.1
2,747,649	-				-1.1
2,747,649	-				+0.1
2,747,713	+		DZA65_RS12820	0.10	+1.2
2,747,714	-		DZA65_RS12820	0.10	-0.6
2,747,716	+		DZA65_RS12820	0.10	-1.9
2,747,716	+		DZA65_RS12820	0.10	+0.2
2,747,716	+		DZA65_RS12820	0.10	+0.2
2,747,716	+		DZA65_RS12820	0.10	+1.0
2,747,717	-		DZA65_RS12820	0.10	-0.8
2,747,717	-		DZA65_RS12820	0.10	-0.8
2,747,717	-		DZA65_RS12820	0.10	+1.2
2,747,717	-		DZA65_RS12820	0.10	-2.0
2,747,717	-		DZA65_RS12820	0.10	-1.6
2,747,719	+		DZA65_RS12820	0.11	-0.5
2,747,767	+		DZA65_RS12820	0.14	+0.6
2,747,768	-		DZA65_RS12820	0.14	-2.8
2,747,768	-		DZA65_RS12820	0.14	-1.9
2,747,772	+				-1.4
2,747,773	-		DZA65_RS12820	0.14	+0.8
2,747,773	-		DZA65_RS12820	0.14	-0.8
2,747,831	+		DZA65_RS12820	0.18	+1.8
2,747,831	+		DZA65_RS12820	0.18	-0.3
2,747,832	-		DZA65_RS12820	0.18	-1.1
2,747,885	+		DZA65_RS12820	0.21	-0.1
2,747,885	+		DZA65_RS12820	0.21	+0.3
2,747,885	+		DZA65_RS12820	0.21	-1.6
2,747,885	+		DZA65_RS12820	0.21	-1.1
2,747,885	+		DZA65_RS12820	0.21	-0.4
2,747,885	+		DZA65_RS12820	0.21	-0.5
2,747,886	-		DZA65_RS12820	0.21	-2.1
2,747,886	-		DZA65_RS12820	0.21	-1.1
2,747,886	-		DZA65_RS12820	0.21	-1.7
2,747,942	+		DZA65_RS12820	0.25	-0.8
2,748,002	+		DZA65_RS12820	0.29	-0.6
2,748,002	+		DZA65_RS12820	0.29	-1.6
2,748,003	-		DZA65_RS12820	0.29	-0.4
2,748,069	-		DZA65_RS12820	0.33	+0.8
2,748,069	-		DZA65_RS12820	0.33	-1.8
2,748,069	-		DZA65_RS12820	0.33	+0.3
2,748,069	-		DZA65_RS12820	0.33	+0.2
2,748,340	+		DZA65_RS12820	0.51	-1.4
2,748,364	+		DZA65_RS12820	0.52	-0.8
2,748,364	+		DZA65_RS12820	0.52	-0.0
2,748,364	+				-1.4
2,748,365	-		DZA65_RS12820	0.52	-1.8
2,748,365	-		DZA65_RS12820	0.52	-0.3
2,748,392	-		DZA65_RS12820	0.54	-1.4
2,748,483	+		DZA65_RS12820	0.60	-0.8
2,748,560	-		DZA65_RS12820	0.65	-0.6
2,748,580	-		DZA65_RS12820	0.66	-0.4
2,748,596	-		DZA65_RS12820	0.67	-0.4
2,748,596	-		DZA65_RS12820	0.67	+1.2
2,748,596	-		DZA65_RS12820	0.67	+0.2
2,748,598	+		DZA65_RS12820	0.67	-0.1
2,748,598	+		DZA65_RS12820	0.67	+0.1
2,748,598	+		DZA65_RS12820	0.67	-0.4
2,748,599	-		DZA65_RS12820	0.67	-0.5
2,748,599	-		DZA65_RS12820	0.67	-0.8
2,748,599	-		DZA65_RS12820	0.67	-1.4
2,748,599	-		DZA65_RS12820	0.67	-0.8
2,748,599	-		DZA65_RS12820	0.67	+0.6
2,748,628	+		DZA65_RS12820	0.69	-0.8
2,748,628	+		DZA65_RS12820	0.69	-0.2
2,748,628	+		DZA65_RS12820	0.69	-0.6
2,748,629	-		DZA65_RS12820	0.69	+5.3
2,748,629	-		DZA65_RS12820	0.69	+0.4
2,748,629	-		DZA65_RS12820	0.69	-0.4
2,748,629	-		DZA65_RS12820	0.69	-0.1
2,748,637	+		DZA65_RS12820	0.70	-0.8
2,748,638	-		DZA65_RS12820	0.70	+0.1
2,748,638	-		DZA65_RS12820	0.70	-2.0
2,748,638	-		DZA65_RS12820	0.70	-1.0
2,748,638	-		DZA65_RS12820	0.70	-1.5
2,748,638	-		DZA65_RS12820	0.70	-0.4
2,748,638	-		DZA65_RS12820	0.70	-2.0
2,748,640	+		DZA65_RS12820	0.70	-1.1
2,748,640	+		DZA65_RS12820	0.70	-2.6
2,748,640	+		DZA65_RS12820	0.70	-0.5
2,748,648	+		DZA65_RS12820	0.70	-0.8
2,748,649	-		DZA65_RS12820	0.70	+0.2
2,748,649	-		DZA65_RS12820	0.70	+0.2
2,748,859	+		DZA65_RS12820	0.84	-0.9
2,748,859	+		DZA65_RS12820	0.84	-0.5
2,748,859	+		DZA65_RS12820	0.84	-1.5
2,748,859	+		DZA65_RS12820	0.84	-3.0
2,748,860	-		DZA65_RS12820	0.84	+0.9
2,748,860	-		DZA65_RS12820	0.84	-0.5
2,748,860	-		DZA65_RS12820	0.84	+0.2
2,749,010	-				+1.0
2,749,071	+				-0.3
2,749,071	+				-1.4
2,749,071	+				-1.6
2,749,071	+				+1.8
2,749,072	-				+0.9
2,749,106	+				+1.6
2,749,107	-				+0.8
2,749,339	+		DZA65_RS12825	0.46	+0.5
2,749,339	+		DZA65_RS12825	0.46	+0.3
2,749,340	-		DZA65_RS12825	0.46	+0.2
2,749,346	-		DZA65_RS12825	0.48	-0.1
2,749,346	-		DZA65_RS12825	0.48	-0.4
2,749,346	-		DZA65_RS12825	0.48	-1.0
2,749,346	-		DZA65_RS12825	0.48	+0.6
2,749,483	+				-1.6
2,749,483	+				+0.1
2,749,483	+				+0.2
2,749,483	+				-1.8
2,749,483	+				-1.1
2,749,484	-				-1.6
2,749,564	+				-1.6
2,749,565	-				-0.6
2,749,565	-				-0.2
2,749,565	-				-0.4
2,749,565	-				+3.1
2,749,570	+				-0.8
2,749,570	+				-1.5
2,749,570	+				-0.0
2,749,570	+				-0.9
2,749,571	-				+1.3
2,749,571	-				-0.0
2,749,574	+				+1.9
2,749,575	-				+1.9
2,749,575	-				-1.1
2,749,575	-				+0.2
2,749,579	+				-0.4
2,749,579	+				-0.4
2,749,580	-				+0.5
2,749,601	-				-1.7
2,749,613	+				-0.0
2,749,665	+				+0.6
2,749,665	+				-0.9
2,749,675	-				+0.2
2,749,675	-				+1.2
2,749,706	+				-0.5
2,749,707	-				+0.2
2,749,707	-				-0.8
2,749,708	+				-1.8
2,749,730	+				+0.3
2,749,770	+				-1.1
2,749,770	+				-0.8
2,749,778	+				-2.7
2,749,778	+				-0.8
2,749,778	+				-2.0
2,749,778	+				-2.4
2,749,778	+				-0.4
2,749,778	+				-1.6
2,749,778	+				+0.8
2,749,778	+				+0.5
2,749,779	-				-0.6
2,749,779	-				-0.7
2,749,779	-				-1.8
2,749,835	-				+0.2
2,749,835	-				+0.0