Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11755

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,507,928	+				+0.1
2,507,966	-		DZA65_RS11750	0.14	+1.0
2,508,128	+		DZA65_RS11750	0.36	-0.9
2,508,128	+		DZA65_RS11750	0.36	-0.9
2,508,128	+		DZA65_RS11750	0.36	-0.2
2,508,198	-		DZA65_RS11750	0.46	-0.4
2,508,207	-		DZA65_RS11750	0.47	-2.2
2,508,258	-		DZA65_RS11750	0.55	+0.5
2,508,267	-		DZA65_RS11750	0.56	-1.5
2,508,267	-				+1.1
2,508,353	-		DZA65_RS11750	0.68	-1.1
2,508,437	-		DZA65_RS11750	0.79	-1.2
2,508,437	-		DZA65_RS11750	0.79	+0.5
2,508,440	+		DZA65_RS11750	0.80	-0.0
2,508,471	-				+2.7
2,508,638	+				-1.2
2,508,769	+				+1.1
2,508,829	-				-0.9
2,508,832	-				+0.5
2,508,843	-				+0.5
2,508,866	+				+1.7
2,508,866	+				+0.0
2,508,899	+				+0.1
2,508,915	+				-1.0
2,508,915	+				-0.7
2,508,916	-				+1.6
2,508,916	-				+0.1
2,508,916	-				-0.9
2,509,144	+		DZA65_RS11755	0.27	-0.7
2,509,207	+		DZA65_RS11755	0.33	-0.8
2,509,228	+		DZA65_RS11755	0.36	-1.2
2,509,228	+		DZA65_RS11755	0.36	+0.3
2,509,228	+		DZA65_RS11755	0.36	-0.2
2,509,228	+		DZA65_RS11755	0.36	-1.7
2,509,228	+		DZA65_RS11755	0.36	-0.2
2,509,228	+		DZA65_RS11755	0.36	+0.7
2,509,229	-		DZA65_RS11755	0.36	+0.4
2,509,229	-		DZA65_RS11755	0.36	-2.3
2,509,229	-		DZA65_RS11755	0.36	+0.1
2,509,229	-		DZA65_RS11755	0.36	+1.1
2,509,233	+		DZA65_RS11755	0.36	-0.1
2,509,233	+		DZA65_RS11755	0.36	+2.1
2,509,234	-		DZA65_RS11755	0.36	+3.3
2,509,234	-		DZA65_RS11755	0.36	-0.5
2,509,295	+		DZA65_RS11755	0.43	+1.3
2,509,295	+		DZA65_RS11755	0.43	-2.3
2,509,296	-		DZA65_RS11755	0.43	-0.1
2,509,296	-		DZA65_RS11755	0.43	-0.5
2,509,443	+		DZA65_RS11755	0.58	-0.3
2,509,443	+		DZA65_RS11755	0.58	-2.0
2,509,444	-		DZA65_RS11755	0.58	-0.2
2,509,444	-		DZA65_RS11755	0.58	-0.9
2,509,445	+		DZA65_RS11755	0.58	-2.6
2,509,445	+		DZA65_RS11755	0.58	-2.9
2,509,445	+		DZA65_RS11755	0.58	+0.4
2,509,445	+		DZA65_RS11755	0.58	-0.7
2,509,445	+		DZA65_RS11755	0.58	-0.5
2,509,445	+		DZA65_RS11755	0.58	-0.5
2,509,445	+				-0.3
2,509,445	+		DZA65_RS11755	0.58	-1.5
2,509,445	+		DZA65_RS11755	0.58	-0.5
2,509,445	+		DZA65_RS11755	0.58	+5.1
2,509,446	-		DZA65_RS11755	0.58	-1.0
2,509,446	-		DZA65_RS11755	0.58	-0.2
2,509,446	-		DZA65_RS11755	0.58	-1.2
2,509,446	-		DZA65_RS11755	0.58	-2.3
2,509,446	-		DZA65_RS11755	0.58	-0.5
2,509,446	-		DZA65_RS11755	0.58	-2.9
2,509,446	-		DZA65_RS11755	0.58	+0.5
2,509,446	-		DZA65_RS11755	0.58	+1.4
2,509,446	-		DZA65_RS11755	0.58	+1.1
2,509,446	-		DZA65_RS11755	0.58	-0.2
2,509,570	+		DZA65_RS11755	0.71	-0.4
2,509,571	-		DZA65_RS11755	0.71	-0.3
2,509,649	+		DZA65_RS11755	0.79	-0.5
2,509,649	+		DZA65_RS11755	0.79	+0.8
2,509,771	-				-1.8
2,509,771	-				-1.9
2,509,800	-				-0.5
2,509,800	-				-0.9
2,509,884	+				-0.9
2,509,884	+				-0.3
2,509,884	+				-0.7
2,509,884	+				-0.4
2,509,884	+				-2.5
2,509,884	+				+0.5
2,509,885	-				-0.0
2,509,885	-				+0.1
2,509,885	-				-0.2
2,509,894	+				+0.5
2,509,894	+				+1.1
2,510,150	+		DZA65_RS11760	0.38	+0.5
2,510,150	+		DZA65_RS11760	0.38	+0.1
2,510,184	+		DZA65_RS11760	0.44	-1.2
2,510,184	+		DZA65_RS11760	0.44	+0.7
2,510,184	+		DZA65_RS11760	0.44	-0.9
2,510,184	+		DZA65_RS11760	0.44	-1.6
2,510,184	+		DZA65_RS11760	0.44	-2.3
2,510,184	+		DZA65_RS11760	0.44	-0.7
2,510,184	+		DZA65_RS11760	0.44	-0.5
2,510,184	+		DZA65_RS11760	0.44	-1.5
2,510,185	-		DZA65_RS11760	0.44	-1.3
2,510,185	-		DZA65_RS11760	0.44	-1.2
2,510,185	-		DZA65_RS11760	0.44	-0.9
2,510,236	-		DZA65_RS11760	0.53	-0.9
2,510,243	+		DZA65_RS11760	0.54	+0.3
2,510,243	+		DZA65_RS11760	0.54	+0.7
2,510,243	+		DZA65_RS11760	0.54	-0.2
2,510,243	+				+0.5
2,510,244	-		DZA65_RS11760	0.54	+3.1
2,510,244	-		DZA65_RS11760	0.54	-1.2
2,510,260	+		DZA65_RS11760	0.57	-1.6
2,510,261	-				-0.9
2,510,261	-				+0.1
2,510,261	-		DZA65_RS11760	0.57	+0.0
2,510,261	-		DZA65_RS11760	0.57	+0.1
2,510,398	+		DZA65_RS11760	0.81	-2.4
2,510,398	+		DZA65_RS11760	0.81	-2.2
2,510,399	-		DZA65_RS11760	0.81	+0.1
2,510,399	-		DZA65_RS11760	0.81	-1.0
2,510,399	-		DZA65_RS11760	0.81	+0.1
2,510,399	-		DZA65_RS11760	0.81	+0.4
2,510,399	-		DZA65_RS11760	0.81	-1.5
2,510,399	-		DZA65_RS11760	0.81	-0.9
2,510,407	+		DZA65_RS11760	0.83	+0.3
2,510,407	+		DZA65_RS11760	0.83	-0.5
2,510,408	-		DZA65_RS11760	0.83	-0.2
2,510,494	+				-0.5
2,510,494	+				-0.5
2,510,520	-				+1.1
2,510,544	-				-0.2
2,510,544	-				-0.6
2,510,544	-				+3.9
2,510,544	-				-0.5
2,510,544	-				+0.2
2,510,547	+				-0.8
2,510,547	+				+1.4
2,510,548	-				-0.5
2,510,548	-				+2.5
2,510,548	-				-1.7
2,510,548	-				-0.5
2,510,554	-				+0.4
2,510,566	+				-1.2
2,510,566	+				+0.1
2,510,567	-				-0.2
2,510,628	-				-0.2
2,510,628	-				-2.2
2,510,661	+				+1.4
2,510,664	+				-0.9
2,510,664	+				+1.0
2,510,700	+				-0.4
2,510,700	+				+3.6
2,510,700	+				-2.0
2,510,758	+				-1.0
2,510,827	+		DZA65_RS11765	0.13	+1.1
2,510,827	+		DZA65_RS11765	0.13	-0.4
2,510,827	+		DZA65_RS11765	0.13	+2.3
2,510,827	+		DZA65_RS11765	0.13	+0.1
2,510,827	+		DZA65_RS11765	0.13	+0.1
2,510,827	+		DZA65_RS11765	0.13	-0.4
2,510,828	-		DZA65_RS11765	0.13	-1.7
2,510,828	-		DZA65_RS11765	0.13	+0.1
2,510,828	-		DZA65_RS11765	0.13	-2.0
2,510,828	-		DZA65_RS11765	0.13	+2.7
2,510,828	-		DZA65_RS11765	0.13	-1.2
2,510,828	-		DZA65_RS11765	0.13	-1.2
2,510,828	-		DZA65_RS11765	0.13	-2.0
2,510,840	-		DZA65_RS11765	0.14	+1.1