Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11655

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,487,484	+		DZA65_RS11650	0.66	-0.4
2,487,484	+		DZA65_RS11650	0.66	-0.3
2,487,636	-		DZA65_RS11650	0.75	-0.7
2,487,636	-		DZA65_RS11650	0.75	+1.2
2,487,636	-		DZA65_RS11650	0.75	-0.4
2,487,636	-		DZA65_RS11650	0.75	-0.8
2,487,669	+		DZA65_RS11650	0.77	-0.8
2,487,669	+		DZA65_RS11650	0.77	-0.1
2,487,670	-		DZA65_RS11650	0.78	-1.8
2,487,670	-		DZA65_RS11650	0.78	-0.2
2,487,670	-		DZA65_RS11650	0.78	-0.8
2,487,734	+		DZA65_RS11650	0.82	-0.0
2,487,735	-		DZA65_RS11650	0.82	-0.4
2,487,735	-		DZA65_RS11650	0.82	+0.2
2,487,766	+		DZA65_RS11650	0.84	-0.4
2,487,817	+		DZA65_RS11650	0.87	+1.2
2,487,817	+		DZA65_RS11650	0.87	+1.5
2,487,817	+		DZA65_RS11650	0.87	-0.4
2,487,818	-		DZA65_RS11650	0.87	+0.3
2,487,821	+		DZA65_RS11650	0.87	-1.2
2,487,821	+		DZA65_RS11650	0.87	-0.2
2,487,821	+		DZA65_RS11650	0.87	-1.7
2,487,822	-		DZA65_RS11650	0.87	-1.8
2,487,827	-		DZA65_RS11650	0.87	+0.2
2,487,827	-		DZA65_RS11650	0.87	-1.4
2,487,885	+				+0.0
2,487,886	-				-0.2
2,487,897	+				-0.4
2,487,897	+				+3.7
2,487,898	-				-1.5
2,487,898	-				+0.3
2,488,006	+				-0.9
2,488,007	-				+3.8
2,488,009	+				-1.3
2,488,009	+				+1.5
2,488,009	+				-1.7
2,488,018	+				-1.2
2,488,018	+				-0.4
2,488,018	+				-0.3
2,488,018	+				+0.2
2,488,018	+				-1.8
2,488,018	+				+0.4
2,488,019	-				-0.6
2,488,019	-				-1.2
2,488,019	-				-0.8
2,488,025	-				-2.0
2,488,041	-				-2.0
2,488,041	-				+0.3
2,488,041	-				+0.2
2,488,043	+				-1.7
2,488,080	+				+1.7
2,488,080	+				+0.6
2,488,080	+				-2.4
2,488,081	-				+0.2
2,488,129	+				-2.8
2,488,130	-				-0.2
2,488,130	-				+0.9
2,488,162	-				-0.7
2,488,173	-				-1.2
2,488,182	+				+0.3
2,488,182	+				-0.1
2,488,224	+				+0.4
2,488,242	+				-1.7
2,488,243	-				+1.7
2,488,243	-				-1.3
2,488,243	-				-0.7
2,488,274	+				+1.6
2,488,390	-				-0.4
2,488,396	+				+0.7
2,488,396	+				+1.5
2,488,396	+				-1.8
2,488,396	+				+0.5
2,488,396	+				-1.4
2,488,396	+				-1.2
2,488,396	+				-1.7
2,488,396	+				-0.3
2,488,397	-				-1.2
2,488,397	-				+0.6
2,488,397	-				-0.6
2,488,397	-				-2.2
2,488,397	-				+0.7
2,488,397	-				-1.8
2,488,397	-				-2.3
2,488,542	+				-1.7
2,488,563	-		DZA65_RS11655	0.11	+1.2
2,488,563	-		DZA65_RS11655	0.11	-0.8
2,488,563	-		DZA65_RS11655	0.11	-1.4
2,488,563	-		DZA65_RS11655	0.11	-2.0
2,488,563	-		DZA65_RS11655	0.11	-2.9
2,488,563	-		DZA65_RS11655	0.11	-0.8
2,488,563	-		DZA65_RS11655	0.11	-0.8
2,488,563	-		DZA65_RS11655	0.11	-0.8
2,488,563	-		DZA65_RS11655	0.11	-0.4
2,488,563	-		DZA65_RS11655	0.11	-0.3
2,488,563	-		DZA65_RS11655	0.11	-3.2
2,488,564	+		DZA65_RS11655	0.11	-2.4
2,488,564	+		DZA65_RS11655	0.11	-1.8
2,488,564	+		DZA65_RS11655	0.11	+0.2
2,488,564	+		DZA65_RS11655	0.11	-1.2
2,488,564	+		DZA65_RS11655	0.11	-0.8
2,488,564	+		DZA65_RS11655	0.11	+2.2
2,488,565	-		DZA65_RS11655	0.11	-2.5
2,488,565	-		DZA65_RS11655	0.11	-0.8
2,488,565	-		DZA65_RS11655	0.11	-2.3
2,488,565	-		DZA65_RS11655	0.11	+2.6
2,488,565	-		DZA65_RS11655	0.11	-0.7
2,488,565	-		DZA65_RS11655	0.11	+0.2
2,488,565	-		DZA65_RS11655	0.11	-1.4
2,488,565	-		DZA65_RS11655	0.11	-1.4
2,488,638	+		DZA65_RS11655	0.16	-0.4
2,488,734	+		DZA65_RS11655	0.22	-2.5
2,488,964	+		DZA65_RS11655	0.37	+1.2
2,488,965	-		DZA65_RS11655	0.37	-1.3
2,488,965	-		DZA65_RS11655	0.37	-0.4
2,489,096	+		DZA65_RS11655	0.45	-1.2
2,489,096	+		DZA65_RS11655	0.45	-0.8
2,489,096	+		DZA65_RS11655	0.45	-0.4
2,489,096	+		DZA65_RS11655	0.45	+1.2
2,489,096	+		DZA65_RS11655	0.45	-1.8
2,489,097	-		DZA65_RS11655	0.45	-0.4
2,489,097	-		DZA65_RS11655	0.45	-1.7
2,489,097	-		DZA65_RS11655	0.45	+1.2
2,489,097	-		DZA65_RS11655	0.45	-3.3
2,489,097	-		DZA65_RS11655	0.45	-0.4
2,489,097	-		DZA65_RS11655	0.45	-2.8
2,489,098	+		DZA65_RS11655	0.45	-1.7
2,489,098	+		DZA65_RS11655	0.45	-0.4
2,489,098	+		DZA65_RS11655	0.45	-0.4
2,489,098	+		DZA65_RS11655	0.45	-1.8
2,489,098	+		DZA65_RS11655	0.45	-3.4
2,489,098	+		DZA65_RS11655	0.45	-2.3
2,489,098	+		DZA65_RS11655	0.45	-1.2
2,489,098	+		DZA65_RS11655	0.45	-0.4
2,489,098	+		DZA65_RS11655	0.45	-0.4
2,489,099	-		DZA65_RS11655	0.45	-2.2
2,489,099	-		DZA65_RS11655	0.45	-1.8
2,489,099	-		DZA65_RS11655	0.45	+0.2
2,489,099	-		DZA65_RS11655	0.45	-1.2
2,489,208	-		DZA65_RS11655	0.52	-0.6
2,489,250	-		DZA65_RS11655	0.55	+0.2
2,489,259	+		DZA65_RS11655	0.56	-0.8
2,489,259	+		DZA65_RS11655	0.56	-0.4
2,489,259	+		DZA65_RS11655	0.56	-0.7
2,489,260	-		DZA65_RS11655	0.56	-0.4
2,489,268	-		DZA65_RS11655	0.56	-1.8
2,489,268	-		DZA65_RS11655	0.56	-3.0
2,489,268	-		DZA65_RS11655	0.56	-0.4
2,489,305	+		DZA65_RS11655	0.59	-1.7
2,489,305	+		DZA65_RS11655	0.59	-0.8
2,489,305	+		DZA65_RS11655	0.59	-1.2
2,489,306	-		DZA65_RS11655	0.59	-3.3
2,489,312	-		DZA65_RS11655	0.59	-2.2
2,489,456	+		DZA65_RS11655	0.68	-1.7
2,489,457	-		DZA65_RS11655	0.68	-3.4
2,489,457	-		DZA65_RS11655	0.68	-3.5
2,489,535	+		DZA65_RS11655	0.73	-0.8
2,489,549	+		DZA65_RS11655	0.74	-0.8
2,489,549	+		DZA65_RS11655	0.74	-2.0
2,489,560	-		DZA65_RS11655	0.75	+0.2
2,489,560	-				-0.8
2,489,634	+		DZA65_RS11655	0.80	-3.9
2,489,634	+		DZA65_RS11655	0.80	-3.6
2,489,634	+		DZA65_RS11655	0.80	-4.4
2,489,635	-		DZA65_RS11655	0.80	-2.4
2,489,635	-		DZA65_RS11655	0.80	-1.5
2,489,764	-		DZA65_RS11655	0.88	-0.8
2,489,808	-				-1.4
2,489,808	-				+1.2
2,489,883	+				+0.2
2,489,899	-				-2.7
2,489,899	-				+0.2
2,489,899	-				-4.0
2,489,910	+				-0.8
2,489,911	-				-3.5
2,489,934	+				-0.3
2,489,935	-				-1.7
2,490,021	+				-0.4
2,490,021	+				-1.7
2,490,022	-				-0.3
2,490,027	+				+0.4
2,490,028	-				-1.5
2,490,028	-				-1.2
2,490,029	+				-2.2
2,490,029	+				-0.8
2,490,030	-				-0.8
2,490,030	-				+0.2
2,490,030	-				-2.2
2,490,030	-				-0.2
2,490,120	+				-0.9
2,490,133	+				-0.7
2,490,150	+				-1.4
2,490,150	+				-3.3
2,490,151	-				-1.7
2,490,151	-				-1.4
2,490,151	-				-1.2
2,490,154	+				-2.3
2,490,180	+				-0.4
2,490,180	+				-2.6
2,490,180	+				-2.6
2,490,180	+				-2.0
2,490,180	+				-2.3
2,490,180	+				+2.1
2,490,181	-				+0.1
2,490,181	-				-1.7
2,490,184	-				-2.2
2,490,184	-				+3.2
2,490,186	+				-1.2
2,490,187	-				+0.3
2,490,234	+				+0.4
2,490,234	+				-1.2
2,490,412	+				+0.6
2,490,412	+				-2.0
2,490,412	+				-1.0
2,490,415	+				-0.1
2,490,415	+				-0.1
2,490,415	+				-0.9
2,490,415	+				-0.4
2,490,415	+				-1.4
2,490,415	+				-0.3
2,490,415	+				-2.5
2,490,415	+				+0.1
2,490,415	+				-1.7
2,490,415	+				-1.0
2,490,416	-				-1.7
2,490,416	-				-0.4
2,490,416	-				-1.2
2,490,416	-				+2.6
2,490,423	+				-0.0
2,490,453	+				+1.1
2,490,468	+				+0.6
2,490,469	-				-0.3
2,490,469	-				-0.9
2,490,471	+				-1.7
2,490,477	+				-0.7
2,490,477	+				-1.9
2,490,477	+				-0.4
2,490,477	+				+0.9
2,490,477	+				-0.4
2,490,477	+				-0.2
2,490,477	+				+0.1
2,490,477	+				+0.0
2,490,477	+				+2.0
2,490,478	-				+0.4
2,490,541	+				-0.7
2,490,541	+				-1.2
2,490,541	+				+1.1
2,490,541	+				+3.2
2,490,542	-				-2.2
2,490,542	-				-2.7
2,490,574	+				-0.9
2,490,575	-				-0.2
2,490,578	+				-1.2
2,490,578	+				-1.9
2,490,578	+				+0.1
2,490,579	-				-0.3
2,490,579	-				-0.9
2,490,608	+				-1.0
2,490,608	+				-0.4
2,490,608	+				+0.3
2,490,608	+				-3.2
2,490,609	-				-0.0
2,490,609	-				-0.3
2,490,609	-				-0.7
2,490,609	-				+1.1
2,490,655	+				+0.9
2,490,655	+		DZA65_RS11660	0.14	-0.4
2,490,656	-				-0.9
2,490,667	-		DZA65_RS11660	0.16	-1.3
2,490,667	-		DZA65_RS11660	0.16	+1.6
2,490,827	+		DZA65_RS11660	0.33	-1.7
2,490,828	-		DZA65_RS11660	0.33	-1.4