Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09820

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,069,328	+		DZA65_RS09815	0.15	+0.2
2,069,334	+		DZA65_RS09815	0.16	+0.8
2,069,426	-		DZA65_RS09815	0.24	-1.4
2,069,452	-		DZA65_RS09815	0.26	-2.7
2,069,457	-		DZA65_RS09815	0.26	+0.0
2,069,494	+		DZA65_RS09815	0.30	-1.1
2,069,494	+		DZA65_RS09815	0.30	-1.7
2,069,494	+		DZA65_RS09815	0.30	-2.2
2,069,494	+		DZA65_RS09815	0.30	-0.6
2,069,495	-		DZA65_RS09815	0.30	+0.6
2,069,527	+		DZA65_RS09815	0.33	+0.9
2,069,527	+		DZA65_RS09815	0.33	-0.6
2,069,527	+		DZA65_RS09815	0.33	+1.2
2,069,528	-		DZA65_RS09815	0.33	+2.2
2,069,528	-		DZA65_RS09815	0.33	-1.6
2,069,670	+		DZA65_RS09815	0.45	-1.6
2,069,670	+		DZA65_RS09815	0.45	+0.2
2,069,671	-		DZA65_RS09815	0.45	-0.3
2,069,752	-		DZA65_RS09815	0.53	-0.6
2,069,767	+		DZA65_RS09815	0.54	-1.4
2,069,767	+		DZA65_RS09815	0.54	-0.4
2,069,767	+		DZA65_RS09815	0.54	-0.4
2,069,767	+		DZA65_RS09815	0.54	+0.2
2,069,767	+		DZA65_RS09815	0.54	+2.0
2,069,767	+		DZA65_RS09815	0.54	+0.2
2,069,768	-		DZA65_RS09815	0.54	+1.2
2,069,768	-		DZA65_RS09815	0.54	+1.2
2,069,768	-		DZA65_RS09815	0.54	+0.0
2,069,768	-		DZA65_RS09815	0.54	-1.6
2,069,821	+		DZA65_RS09815	0.59	-1.1
2,069,821	+		DZA65_RS09815	0.59	+0.4
2,069,821	+		DZA65_RS09815	0.59	-1.1
2,069,821	+		DZA65_RS09815	0.59	-0.4
2,069,822	-		DZA65_RS09815	0.59	+0.2
2,069,822	-		DZA65_RS09815	0.59	-0.4
2,069,862	+		DZA65_RS09815	0.62	+0.8
2,070,027	+		DZA65_RS09815	0.77	-1.1
2,070,028	-		DZA65_RS09815	0.77	+0.2
2,070,028	-		DZA65_RS09815	0.77	-0.8
2,070,115	+		DZA65_RS09815	0.85	-1.2
2,070,115	+		DZA65_RS09815	0.85	-1.5
2,070,116	-		DZA65_RS09815	0.85	+0.5
2,070,126	+		DZA65_RS09815	0.86	-0.4
2,070,139	+		DZA65_RS09815	0.87	+0.5
2,070,148	+		DZA65_RS09815	0.88	-1.4
2,070,148	+		DZA65_RS09815	0.88	-1.4
2,070,148	+		DZA65_RS09815	0.88	-0.8
2,070,209	+				+0.4
2,070,209	+				+0.5
2,070,210	-				-1.1
2,070,210	-				+1.0
2,070,210	-				+0.6
2,070,210	-				+0.6
2,070,224	+				-0.4
2,070,224	+				-1.6
2,070,224	+				-1.4
2,070,231	+				-0.4
2,070,231	+				-0.4
2,070,231	+				+1.2
2,070,253	+				-1.8
2,070,302	+				+0.9
2,070,303	-				+0.2
2,070,303	-				-1.9
2,070,349	+				-2.7
2,070,374	+				+1.6
2,070,442	+		DZA65_RS09820	0.12	+0.6
2,070,443	-		DZA65_RS09820	0.12	-1.6
2,070,451	+		DZA65_RS09820	0.13	-0.4
2,070,452	-		DZA65_RS09820	0.13	+0.6
2,070,547	+		DZA65_RS09820	0.21	-1.6
2,070,547	+		DZA65_RS09820	0.21	-0.2
2,070,548	-		DZA65_RS09820	0.21	-0.8
2,070,548	-		DZA65_RS09820	0.21	-0.5
2,070,548	-		DZA65_RS09820	0.21	+0.1
2,070,548	-		DZA65_RS09820	0.21	-0.1
2,070,571	+		DZA65_RS09820	0.23	-1.1
2,070,575	-		DZA65_RS09820	0.23	+1.2
2,070,575	-		DZA65_RS09820	0.23	-1.1
2,070,575	-		DZA65_RS09820	0.23	-0.1
2,070,651	+		DZA65_RS09820	0.29	+1.0
2,070,651	+		DZA65_RS09820	0.29	-1.0
2,070,651	+		DZA65_RS09820	0.29	+0.6
2,070,651	+		DZA65_RS09820	0.29	-1.6
2,070,652	-				-0.6
2,070,652	-		DZA65_RS09820	0.29	-2.6
2,070,652	-		DZA65_RS09820	0.29	-0.8
2,070,652	-		DZA65_RS09820	0.29	-0.8
2,070,652	-		DZA65_RS09820	0.29	-0.8
2,070,652	-		DZA65_RS09820	0.29	-1.3
2,070,704	+		DZA65_RS09820	0.34	-1.2
2,070,704	+		DZA65_RS09820	0.34	+2.0
2,070,704	+		DZA65_RS09820	0.34	-0.9
2,070,704	+		DZA65_RS09820	0.34	-0.4
2,070,705	-		DZA65_RS09820	0.34	+0.0
2,070,705	-		DZA65_RS09820	0.34	-0.9
2,070,705	-		DZA65_RS09820	0.34	-0.8
2,070,705	-		DZA65_RS09820	0.34	-0.4
2,070,705	-		DZA65_RS09820	0.34	-2.6
2,070,746	-		DZA65_RS09820	0.37	-1.0
2,070,746	-		DZA65_RS09820	0.37	-0.8
2,070,792	+				+0.6
2,070,807	+				-1.6
2,070,807	+		DZA65_RS09820	0.42	-0.9
2,070,808	-		DZA65_RS09820	0.42	-0.6
2,070,811	+		DZA65_RS09820	0.43	-0.9
2,070,812	-		DZA65_RS09820	0.43	+0.9
2,070,839	+		DZA65_RS09820	0.45	+0.1
2,070,859	+		DZA65_RS09820	0.47	-0.9
2,070,860	-		DZA65_RS09820	0.47	-1.1
2,070,860	-		DZA65_RS09820	0.47	+0.2
2,071,009	+		DZA65_RS09820	0.59	-1.6
2,071,009	+		DZA65_RS09820	0.59	-1.4
2,071,051	-		DZA65_RS09820	0.63	+0.2
2,071,304	-		DZA65_RS09820	0.84	-0.8
2,071,377	+				-1.4
2,071,377	+				-0.4
2,071,378	-				-0.5
2,071,378	-				-0.4
2,071,378	-				+1.2
2,071,381	+				-1.4
2,071,381	+				-1.9
2,071,381	+				-0.4
2,071,381	+				+1.6
2,071,382	-				+5.3
2,071,445	-				+1.2
2,071,538	+				-0.4
2,071,541	+				+2.2
2,071,541	+				+0.0
2,071,542	-				+0.2
2,071,558	+				-1.7
2,071,559	-				-1.1
2,071,559	-				+1.8
2,071,559	-				+1.0
2,071,565	+				-0.9
2,071,566	-				+0.4
2,071,566	-				+0.4
2,071,566	-				-0.8
2,071,566	-				+0.3
2,071,569	+				+0.2
2,071,569	+				+0.2
2,071,569	+				-0.6
2,071,569	+				+0.0
2,071,570	-				+1.6
2,071,570	-				-0.4
2,071,570	-				+0.6
2,071,570	-				-0.8
2,071,713	-				-1.6
2,071,713	-				+1.2
2,071,713	-				+0.1
2,071,748	+				-1.2
2,071,748	+				-0.6
2,071,748	+				+1.6
2,071,748	+				-1.4
2,071,748	+				-0.4
2,071,748	+				-0.8
2,071,748	+				+0.6
2,071,748	+				-0.6
2,071,748	+				+0.6
2,071,878	+				-0.4
2,071,979	+		DZA65_RS09825	0.36	-1.1
2,071,980	-		DZA65_RS09825	0.36	-2.1
2,072,133	-		DZA65_RS09825	0.57	+0.6
2,072,135	+		DZA65_RS09825	0.57	-0.2
2,072,136	-		DZA65_RS09825	0.57	-1.6
2,072,136	-		DZA65_RS09825	0.57	-0.1
2,072,136	-		DZA65_RS09825	0.57	+0.2
2,072,136	-		DZA65_RS09825	0.57	-0.5
2,072,193	+		DZA65_RS09825	0.65	-1.4
2,072,194	-		DZA65_RS09825	0.65	-1.9
2,072,204	+		DZA65_RS09825	0.67	-1.8
2,072,218	+		DZA65_RS09825	0.68	+1.2
2,072,259	+		DZA65_RS09825	0.74	-1.4
2,072,260	-		DZA65_RS09825	0.74	-0.8
2,072,260	-		DZA65_RS09825	0.74	-0.6
2,072,260	-		DZA65_RS09825	0.74	-1.4
2,072,260	-		DZA65_RS09825	0.74	+0.2
2,072,272	+		DZA65_RS09825	0.76	-1.6
2,072,273	-		DZA65_RS09825	0.76	-0.8
2,072,273	-		DZA65_RS09825	0.76	+0.1
2,072,273	-		DZA65_RS09825	0.76	-1.8
2,072,354	+		DZA65_RS09825	0.87	-1.4
2,072,354	+		DZA65_RS09825	0.87	+1.5
2,072,400	+				-1.6
2,072,458	-				-1.6
2,072,467	+				+0.8
2,072,467	+				+1.2
2,072,467	+				-1.4
2,072,467	+				-0.9
2,072,468	-				+0.8
2,072,479	-				+2.2