Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09650

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,029,734	-		DZA65_RS09640	0.71	+0.8
2,029,795	+		DZA65_RS09640	0.77	+0.0
2,029,808	+		DZA65_RS09640	0.78	-0.8
2,029,809	-		DZA65_RS09640	0.78	-1.0
2,029,809	-		DZA65_RS09640	0.78	-2.1
2,029,809	-		DZA65_RS09640	0.78	-0.4
2,029,908	+		DZA65_RS09640	0.87	-1.7
2,029,909	-		DZA65_RS09640	0.87	-1.1
2,029,909	-		DZA65_RS09640	0.87	+2.2
2,029,975	+				-0.3
2,029,976	-				+0.5
2,029,976	-				-1.1
2,030,001	+				+0.6
2,030,001	+				-1.0
2,030,001	+				+0.8
2,030,002	-				-1.1
2,030,002	-				+1.2
2,030,002	-				-1.2
2,030,047	+				+1.2
2,030,048	-				-1.6
2,030,063	+				+3.3
2,030,064	-				+0.6
2,030,079	+				+0.4
2,030,080	-				-0.6
2,030,080	-				-1.0
2,030,144	-				-0.8
2,030,144	-				-0.4
2,030,164	+		DZA65_RS09645	0.17	-0.1
2,030,164	+		DZA65_RS09645	0.17	+2.2
2,030,164	+		DZA65_RS09645	0.17	-1.2
2,030,164	+		DZA65_RS09645	0.17	+2.8
2,030,164	+		DZA65_RS09645	0.17	+1.4
2,030,164	+		DZA65_RS09645	0.17	-2.8
2,030,164	+		DZA65_RS09645	0.17	+0.0
2,030,164	+		DZA65_RS09645	0.17	-1.2
2,030,165	-		DZA65_RS09645	0.18	+0.3
2,030,165	-		DZA65_RS09645	0.18	-0.4
2,030,165	-		DZA65_RS09645	0.18	-0.8
2,030,165	-		DZA65_RS09645	0.18	-0.1
2,030,173	+		DZA65_RS09645	0.22	-1.4
2,030,173	+		DZA65_RS09645	0.22	-1.8
2,030,174	-		DZA65_RS09645	0.22	-0.8
2,030,174	-		DZA65_RS09645	0.22	-1.4
2,030,176	+		DZA65_RS09645	0.23	+0.9
2,030,227	-		DZA65_RS09645	0.47	+3.6
2,030,236	+		DZA65_RS09645	0.51	-0.9
2,030,242	+		DZA65_RS09645	0.54	+0.9
2,030,242	+		DZA65_RS09645	0.54	-0.8
2,030,259	+		DZA65_RS09645	0.62	+0.2
2,030,260	-		DZA65_RS09645	0.62	-0.8
2,030,265	+		DZA65_RS09645	0.65	-0.6
2,030,265	+		DZA65_RS09645	0.65	-0.8
2,030,266	-		DZA65_RS09645	0.65	-1.0
2,030,271	+		DZA65_RS09645	0.68	-0.6
2,030,271	+		DZA65_RS09645	0.68	-1.6
2,030,271	+		DZA65_RS09645	0.68	+1.0
2,030,271	+		DZA65_RS09645	0.68	-1.1
2,030,272	-		DZA65_RS09645	0.68	-0.9
2,030,272	-		DZA65_RS09645	0.68	-1.2
2,030,272	-		DZA65_RS09645	0.68	-2.4
2,030,272	-		DZA65_RS09645	0.68	-0.4
2,030,274	+		DZA65_RS09645	0.69	-0.4
2,030,275	-		DZA65_RS09645	0.69	-0.4
2,030,275	-		DZA65_RS09645	0.69	+1.0
2,030,275	-		DZA65_RS09645	0.69	+3.5
2,030,275	-		DZA65_RS09645	0.69	+1.2
2,030,294	-		DZA65_RS09645	0.78	-0.3
2,030,298	+		DZA65_RS09645	0.80	+0.6
2,030,298	+				-1.6
2,030,298	+		DZA65_RS09645	0.80	-0.6
2,030,307	+		DZA65_RS09645	0.85	-0.4
2,030,307	+		DZA65_RS09645	0.85	-2.5
2,030,307	+		DZA65_RS09645	0.85	+1.6
2,030,308	-		DZA65_RS09645	0.85	-1.9
2,030,308	-		DZA65_RS09645	0.85	+0.2
2,030,308	-		DZA65_RS09645	0.85	-2.2
2,030,308	-		DZA65_RS09645	0.85	-2.6
2,030,322	+				-1.9
2,030,322	+				+0.0
2,030,323	-				-0.8
2,030,323	-				+1.4
2,030,323	-				+0.6
2,030,323	-				-0.2
2,030,371	+				-0.1
2,030,371	+				-0.4
2,030,372	-				+1.2
2,030,372	-				+0.2
2,030,440	+				+0.5
2,030,469	+				-0.6
2,030,526	-				-0.6
2,030,586	+				+0.1
2,030,586	+				+0.2
2,030,587	-				-0.7
2,030,587	-				-0.4
2,030,643	+				+0.5
2,030,651	+				-1.1
2,030,651	+				+0.2
2,030,652	-				-0.0
2,030,654	+				-0.4
2,030,655	-				+0.2
2,030,732	-				-0.2
2,030,732	-				-0.8
2,030,732	-				-2.2
2,030,732	-				-1.1
2,030,732	-				-0.4
2,030,732	-				-0.8
2,030,734	+				-0.2
2,030,734	+				-0.6
2,030,734	+				-1.4
2,030,735	-				+1.2
2,030,735	-				-1.6
2,030,735	-				+0.2
2,030,746	+				-1.1
2,030,941	+		DZA65_RS09650	0.32	+1.3
2,030,942	-		DZA65_RS09650	0.33	-1.2
2,031,142	+		DZA65_RS09650	0.56	-0.1
2,031,142	+		DZA65_RS09650	0.56	-1.4
2,031,143	-		DZA65_RS09650	0.56	+0.2
2,031,143	-		DZA65_RS09650	0.56	-0.4
2,031,194	-		DZA65_RS09650	0.62	-0.9
2,031,220	+		DZA65_RS09650	0.65	-1.6
2,031,220	+		DZA65_RS09650	0.65	-0.6
2,031,221	-		DZA65_RS09650	0.65	+0.6
2,031,221	-		DZA65_RS09650	0.65	+0.9
2,031,273	+		DZA65_RS09650	0.72	-0.5
2,031,274	-		DZA65_RS09650	0.72	-0.4
2,031,274	-		DZA65_RS09650	0.72	-0.2
2,031,274	-		DZA65_RS09650	0.72	+0.4
2,031,280	-		DZA65_RS09650	0.72	+0.4
2,031,323	+		DZA65_RS09650	0.78	-0.6
2,031,324	-		DZA65_RS09650	0.78	-0.0
2,031,324	-		DZA65_RS09650	0.78	-0.1
2,031,361	+		DZA65_RS09650	0.82	+0.5
2,031,362	-		DZA65_RS09650	0.82	-1.8
2,031,425	+		DZA65_RS09650	0.90	+0.6
2,031,493	-				-0.6
2,031,493	-				-2.4
2,031,626	-				+0.2
2,031,657	+		DZA65_RS09655	0.11	-1.9
2,031,658	-		DZA65_RS09655	0.11	-0.1
2,031,665	+		DZA65_RS09655	0.12	-0.3
2,031,665	+		DZA65_RS09655	0.12	-0.8
2,031,665	+		DZA65_RS09655	0.12	-0.5
2,031,665	+		DZA65_RS09655	0.12	-0.1
2,031,665	+		DZA65_RS09655	0.12	+0.2
2,031,665	+		DZA65_RS09655	0.12	-0.4
2,031,665	+		DZA65_RS09655	0.12	+3.2
2,031,665	+		DZA65_RS09655	0.12	-1.1
2,031,666	-		DZA65_RS09655	0.12	-0.1
2,031,666	-		DZA65_RS09655	0.12	+1.0
2,031,666	-		DZA65_RS09655	0.12	+1.2
2,031,666	-		DZA65_RS09655	0.12	-1.5
2,031,666	-		DZA65_RS09655	0.12	-0.4
2,031,666	-		DZA65_RS09655	0.12	-1.9
2,031,666	-		DZA65_RS09655	0.12	+0.9
2,031,666	-		DZA65_RS09655	0.12	-1.4
2,031,669	-		DZA65_RS09655	0.12	+1.2
2,031,722	+		DZA65_RS09655	0.17	-0.6
2,031,925	-		DZA65_RS09655	0.35	+0.1
2,031,925	-		DZA65_RS09655	0.35	-0.5
2,031,940	+		DZA65_RS09655	0.36	+0.6
2,031,940	+		DZA65_RS09655	0.36	+0.2
2,032,109	-		DZA65_RS09655	0.51	-1.1
2,032,240	+		DZA65_RS09655	0.63	-1.9
2,032,240	+				+0.6
2,032,240	+		DZA65_RS09655	0.63	-1.1
2,032,240	+		DZA65_RS09655	0.63	-2.9
2,032,240	+		DZA65_RS09655	0.63	-1.1
2,032,241	-		DZA65_RS09655	0.63	+1.2
2,032,241	-		DZA65_RS09655	0.63	+0.8
2,032,241	-		DZA65_RS09655	0.63	-2.4
2,032,242	+		DZA65_RS09655	0.63	+0.2
2,032,242	+		DZA65_RS09655	0.63	-0.0
2,032,242	+		DZA65_RS09655	0.63	-0.8
2,032,242	+		DZA65_RS09655	0.63	-1.1
2,032,242	+		DZA65_RS09655	0.63	+0.6
2,032,243	-		DZA65_RS09655	0.63	+2.1
2,032,243	-		DZA65_RS09655	0.63	+1.9
2,032,243	-		DZA65_RS09655	0.63	-0.6
2,032,243	-		DZA65_RS09655	0.63	-0.8
2,032,243	-		DZA65_RS09655	0.63	-0.6
2,032,243	-		DZA65_RS09655	0.63	-1.8
2,032,243	-		DZA65_RS09655	0.63	-1.4
2,032,243	-		DZA65_RS09655	0.63	-0.8
2,032,243	-		DZA65_RS09655	0.63	-0.2
2,032,383	+		DZA65_RS09655	0.76	-2.5
2,032,384	-		DZA65_RS09655	0.76	-0.8
2,032,384	-		DZA65_RS09655	0.76	+1.2
2,032,384	-		DZA65_RS09655	0.76	+3.2
2,032,512	+		DZA65_RS09655	0.87	+0.1
2,032,512	+		DZA65_RS09655	0.87	-1.4
2,032,512	+		DZA65_RS09655	0.87	-0.4
2,032,512	+		DZA65_RS09655	0.87	+2.8