Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08530

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,799,046	+		DZA65_RS08525	0.38	+0.7
1,799,046	+		DZA65_RS08525	0.38	+1.6
1,799,046	+		DZA65_RS08525	0.38	-0.3
1,799,046	+		DZA65_RS08525	0.38	-0.3
1,799,046	+		DZA65_RS08525	0.38	-1.3
1,799,046	+		DZA65_RS08525	0.38	-0.7
1,799,046	+		DZA65_RS08525	0.38	-0.5
1,799,046	+		DZA65_RS08525	0.38	-1.0
1,799,046	+		DZA65_RS08525	0.38	+1.4
1,799,046	+		DZA65_RS08525	0.38	-2.1
1,799,047	-		DZA65_RS08525	0.38	+0.7
1,799,047	-		DZA65_RS08525	0.38	-1.0
1,799,047	-		DZA65_RS08525	0.38	-0.7
1,799,047	-		DZA65_RS08525	0.38	-0.3
1,799,139	+		DZA65_RS08525	0.44	-0.7
1,799,140	-		DZA65_RS08525	0.44	-1.0
1,799,140	-		DZA65_RS08525	0.44	-1.0
1,799,140	-		DZA65_RS08525	0.44	+0.2
1,799,171	-		DZA65_RS08525	0.46	-0.7
1,799,222	-		DZA65_RS08525	0.50	-1.0
1,799,222	-		DZA65_RS08525	0.50	-1.3
1,799,222	-		DZA65_RS08525	0.50	-0.7
1,799,296	+		DZA65_RS08525	0.55	-1.1
1,799,423	+		DZA65_RS08525	0.63	-0.7
1,799,423	+		DZA65_RS08525	0.63	-1.0
1,799,424	-		DZA65_RS08525	0.63	+2.8
1,799,424	-		DZA65_RS08525	0.63	-2.0
1,799,445	+		DZA65_RS08525	0.65	-2.5
1,799,445	+		DZA65_RS08525	0.65	-1.2
1,799,445	+		DZA65_RS08525	0.65	-0.4
1,799,445	+		DZA65_RS08525	0.65	-0.1
1,799,445	+		DZA65_RS08525	0.65	-1.0
1,799,446	-		DZA65_RS08525	0.65	+0.5
1,799,446	-		DZA65_RS08525	0.65	-1.3
1,799,446	-		DZA65_RS08525	0.65	+0.0
1,799,635	-		DZA65_RS08525	0.78	+1.3
1,799,635	-		DZA65_RS08525	0.78	+2.1
1,799,636	+		DZA65_RS08525	0.78	-0.5
1,799,636	+		DZA65_RS08525	0.78	+1.6
1,799,637	-		DZA65_RS08525	0.78	+0.3
1,799,637	-		DZA65_RS08525	0.78	-3.4
1,799,647	+		DZA65_RS08525	0.78	+5.9
1,799,650	+		DZA65_RS08525	0.79	+0.6
1,799,694	-		DZA65_RS08525	0.82	+1.1
1,799,797	+		DZA65_RS08525	0.89	-1.8
1,799,797	+		DZA65_RS08525	0.89	+0.0
1,799,822	+				-1.0
1,799,822	+				+1.9
1,799,822	+				-1.0
1,799,823	-				-1.5
1,799,823	-				-0.7
1,799,823	-				-0.8
1,799,823	-				+0.1
1,799,823	-				-0.3
1,799,823	-				-1.8
1,799,955	-				+0.2
1,799,977	+				-0.4
1,799,978	-				-1.5
1,800,007	+				+0.0
1,800,007	+				-0.3
1,800,007	+				-0.7
1,800,008	-				-0.3
1,800,012	+				-0.3
1,800,012	+				-1.3
1,800,013	-				-1.5
1,800,164	+		DZA65_RS08530	0.12	-0.7
1,800,164	+		DZA65_RS08530	0.12	-1.5
1,800,165	-		DZA65_RS08530	0.12	+0.1
1,800,165	-		DZA65_RS08530	0.12	-0.3
1,800,165	-		DZA65_RS08530	0.12	+0.0
1,800,165	-		DZA65_RS08530	0.12	-0.8
1,800,171	+		DZA65_RS08530	0.12	-1.9
1,800,171	+		DZA65_RS08530	0.12	-0.3
1,800,172	-				+0.9
1,800,172	-		DZA65_RS08530	0.12	-2.0
1,800,172	-		DZA65_RS08530	0.12	-1.0
1,800,172	-		DZA65_RS08530	0.12	-0.5
1,800,192	+		DZA65_RS08530	0.14	-1.1
1,800,192	+		DZA65_RS08530	0.14	+0.3
1,800,192	+		DZA65_RS08530	0.14	-1.0
1,800,192	+		DZA65_RS08530	0.14	+0.2
1,800,192	+		DZA65_RS08530	0.14	+1.3
1,800,192	+		DZA65_RS08530	0.14	+1.3
1,800,193	-		DZA65_RS08530	0.14	-0.7
1,800,193	-		DZA65_RS08530	0.14	-1.5
1,800,193	-				-0.3
1,800,193	-		DZA65_RS08530	0.14	+1.3
1,800,193	-		DZA65_RS08530	0.14	-0.3
1,800,193	-		DZA65_RS08530	0.14	-0.3
1,800,193	-		DZA65_RS08530	0.14	-1.3
1,800,193	-		DZA65_RS08530	0.14	-0.5
1,800,193	-		DZA65_RS08530	0.14	-1.3
1,800,213	+		DZA65_RS08530	0.15	-1.4
1,800,213	+		DZA65_RS08530	0.15	-1.1
1,800,214	-		DZA65_RS08530	0.15	-1.0
1,800,214	-		DZA65_RS08530	0.15	+0.3
1,800,214	-		DZA65_RS08530	0.15	-1.0
1,800,271	-		DZA65_RS08530	0.19	+1.3
1,800,357	+		DZA65_RS08530	0.25	-1.1
1,800,358	-		DZA65_RS08530	0.25	+0.7
1,800,407	+		DZA65_RS08530	0.29	+0.2
1,800,414	+		DZA65_RS08530	0.29	+0.7
1,800,414	+		DZA65_RS08530	0.29	+1.3
1,800,414	+		DZA65_RS08530	0.29	-0.7
1,800,415	-		DZA65_RS08530	0.30	-1.0
1,800,415	-		DZA65_RS08530	0.30	-0.1
1,800,456	-		DZA65_RS08530	0.32	+0.1
1,800,658	-		DZA65_RS08530	0.47	-1.4
1,800,658	-		DZA65_RS08530	0.47	+1.0
1,800,665	+		DZA65_RS08530	0.47	-1.5
1,800,665	+		DZA65_RS08530	0.47	-0.5
1,800,665	+		DZA65_RS08530	0.47	+0.7
1,800,665	+		DZA65_RS08530	0.47	+0.0
1,800,666	-		DZA65_RS08530	0.47	-0.5
1,800,666	-		DZA65_RS08530	0.47	-0.0
1,800,666	-		DZA65_RS08530	0.47	-0.6
1,800,666	-		DZA65_RS08530	0.47	-0.7
1,800,666	-		DZA65_RS08530	0.47	-1.5
1,800,666	-		DZA65_RS08530	0.47	+0.6
1,800,666	-		DZA65_RS08530	0.47	-1.0
1,800,666	-		DZA65_RS08530	0.47	-0.3
1,800,668	+		DZA65_RS08530	0.47	+0.3
1,800,668	+		DZA65_RS08530	0.47	-0.7
1,800,668	+		DZA65_RS08530	0.47	-0.7
1,800,669	-		DZA65_RS08530	0.48	-1.7
1,800,669	-		DZA65_RS08530	0.48	-0.2
1,800,669	-		DZA65_RS08530	0.48	-0.1
1,800,669	-		DZA65_RS08530	0.48	-0.7
1,800,669	-		DZA65_RS08530	0.48	-1.4
1,800,684	+		DZA65_RS08530	0.49	+1.6
1,800,684	+		DZA65_RS08530	0.49	-1.3
1,800,684	+		DZA65_RS08530	0.49	+0.7
1,800,685	-		DZA65_RS08530	0.49	-0.4
1,800,685	-		DZA65_RS08530	0.49	-0.1
1,800,687	+		DZA65_RS08530	0.49	-1.0
1,800,687	+		DZA65_RS08530	0.49	+0.1
1,800,688	-		DZA65_RS08530	0.49	-1.4
1,800,700	+		DZA65_RS08530	0.50	-1.9
1,800,700	+		DZA65_RS08530	0.50	-0.5
1,800,700	+		DZA65_RS08530	0.50	-1.0
1,800,700	+		DZA65_RS08530	0.50	+1.1
1,800,700	+		DZA65_RS08530	0.50	+0.3
1,800,700	+				-1.3
1,800,700	+		DZA65_RS08530	0.50	-0.1
1,800,701	-		DZA65_RS08530	0.50	-1.0
1,800,721	+		DZA65_RS08530	0.51	+1.9
1,800,722	-		DZA65_RS08530	0.51	-1.0
1,800,722	-		DZA65_RS08530	0.51	+0.6
1,800,829	-		DZA65_RS08530	0.59	-1.3
1,800,875	+		DZA65_RS08530	0.62	+4.6
1,800,899	+		DZA65_RS08530	0.64	+1.3
1,800,899	+		DZA65_RS08530	0.64	-1.5
1,800,899	+		DZA65_RS08530	0.64	-0.8
1,800,941	-		DZA65_RS08530	0.67	+0.0
1,800,941	-		DZA65_RS08530	0.67	-0.6
1,800,994	+		DZA65_RS08530	0.71	-1.0
1,800,994	+		DZA65_RS08530	0.71	+0.3
1,800,994	+		DZA65_RS08530	0.71	+0.3
1,800,994	+		DZA65_RS08530	0.71	-0.3
1,800,994	+		DZA65_RS08530	0.71	+0.3
1,800,995	-		DZA65_RS08530	0.71	+0.3
1,800,995	-		DZA65_RS08530	0.71	-0.3
1,800,995	-		DZA65_RS08530	0.71	-0.8
1,801,024	+		DZA65_RS08530	0.73	+0.3
1,801,030	+				+0.1
1,801,030	+		DZA65_RS08530	0.73	+1.4
1,801,038	+		DZA65_RS08530	0.74	-1.0
1,801,039	-		DZA65_RS08530	0.74	+1.3
1,801,039	-		DZA65_RS08530	0.74	-1.0
1,801,061	+		DZA65_RS08530	0.75	-1.5
1,801,137	+		DZA65_RS08530	0.81	-1.8
1,801,138	-		DZA65_RS08530	0.81	-0.6
1,801,148	+		DZA65_RS08530	0.81	+1.3
1,801,148	+		DZA65_RS08530	0.81	-0.5
1,801,178	+		DZA65_RS08530	0.84	+1.6
1,801,178	+		DZA65_RS08530	0.84	+0.6
1,801,179	-		DZA65_RS08530	0.84	+2.9
1,801,179	-		DZA65_RS08530	0.84	-2.0
1,801,179	-		DZA65_RS08530	0.84	+0.2
1,801,219	-		DZA65_RS08530	0.87	+0.3
1,801,233	+		DZA65_RS08530	0.88	-1.7
1,801,233	+		DZA65_RS08530	0.88	-1.7
1,801,234	-		DZA65_RS08530	0.88	-2.1
1,801,234	-		DZA65_RS08530	0.88	-0.3
1,801,234	-		DZA65_RS08530	0.88	-0.8
1,801,280	+				-1.0
1,801,280	+				-0.8
1,801,280	+				+0.7
1,801,281	-				-1.7
1,801,311	+				+0.1
1,801,311	+				-0.8
1,801,312	-				-1.4
1,801,312	-				-0.1
1,801,330	+				+1.3
1,801,331	-				-1.2
1,801,331	-				-1.3
1,801,331	-				+0.7
1,801,331	-				-0.1
1,801,331	-				-1.0
1,801,331	-				-0.3
1,801,331	-				+2.9
1,801,334	+				-0.3
1,801,334	+				+0.5
1,801,334	+				+0.7
1,801,334	+				-0.8
1,801,335	-				+1.5
1,801,365	+				+0.7
1,801,411	+				+0.3
1,801,411	+				-0.5
1,801,411	+				-1.4
1,801,412	-				-0.3
1,801,412	-				-0.1
1,801,444	+				-1.3
1,801,445	-				+0.0
1,801,445	-				-2.3
1,801,445	-				-0.7
1,801,484	+				-1.4
1,801,485	-				-1.3
1,801,491	-				+2.0
1,801,532	+				+0.6
1,801,667	+		DZA65_RS08535	0.28	-0.7
1,801,667	+		DZA65_RS08535	0.28	-0.3
1,801,716	+				-1.3
1,801,727	-		DZA65_RS08535	0.51	-0.1
1,801,742	+		DZA65_RS08535	0.57	-0.1
1,801,763	+		DZA65_RS08535	0.65	+2.3
1,801,764	-		DZA65_RS08535	0.65	-1.0
1,801,764	-		DZA65_RS08535	0.65	-1.5
1,801,847	+				-0.0
1,801,851	+				+1.3
1,801,852	-				-0.5
1,801,852	-				-0.7
1,801,852	-				-1.2
1,801,852	-				-0.7
1,801,879	+				+0.8
1,801,904	+				+0.1
1,801,982	+				-1.1
1,801,982	+				+0.3
1,802,083	+				+0.1
1,802,126	-				-2.4
1,802,171	+				+0.3
1,802,178	+				-0.3
1,802,289	+				+0.6
1,802,289	+				-0.5
1,802,289	+				-0.6
1,802,289	+				-1.0
1,802,290	-				+0.0
1,802,397	+				+2.6