Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07450

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,547,394	+		DZA65_RS07440	0.84	-1.0
1,547,395	-		DZA65_RS07440	0.84	-0.2
1,547,473	+				+0.8
1,547,482	-				-1.0
1,547,487	+				-0.7
1,547,488	-				-1.9
1,547,557	+				+0.3
1,547,557	+				+0.7
1,547,557	+				+0.4
1,547,557	+				-0.9
1,547,557	+				+0.0
1,547,557	+				-1.2
1,547,557	+				-0.2
1,547,558	-				-0.2
1,547,558	-				-0.4
1,547,558	-				-0.7
1,547,558	-				+0.4
1,547,558	-				+0.2
1,547,558	-				-1.3
1,547,558	-				-1.2
1,547,593	+				+0.0
1,547,603	+				-1.2
1,547,603	+				+0.1
1,547,604	-				+0.4
1,547,610	+				+0.3
1,547,610	+				+1.0
1,547,610	+				-0.2
1,547,610	+				+0.0
1,547,610	+				-0.6
1,547,610	+				+0.2
1,547,610	+				+0.4
1,547,610	+				-0.2
1,547,610	+				+1.1
1,547,611	-				-1.0
1,547,611	-				-1.6
1,547,611	-				-0.9
1,547,611	-				+0.0
1,547,611	-				+1.4
1,547,611	-				-0.7
1,547,611	-				+1.1
1,547,612	+				+0.4
1,547,612	+				+2.5
1,547,612	+				-0.2
1,547,612	+				+1.1
1,547,612	+				+1.1
1,547,613	-				-0.6
1,547,613	-				+1.4
1,547,613	-				+0.8
1,547,613	-				-0.8
1,547,613	-				+2.0
1,547,613	-				-0.6
1,547,613	-				+1.4
1,547,613	-				-0.4
1,547,613	-				-0.9
1,547,613	-				-1.4
1,547,613	-				-2.3
1,547,613	-				+0.7
1,547,640	+				-0.7
1,547,640	+				-0.9
1,547,640	+				-1.2
1,547,640	+				-1.4
1,547,640	+				+0.2
1,547,640	+				-0.2
1,547,640	+				-0.6
1,547,640	+				-0.9
1,547,641	-				-1.7
1,547,641	-				-0.6
1,547,641	-				-0.2
1,547,641	-				+0.8
1,547,648	-				-1.2
1,547,648	-				-1.6
1,547,648	-				-0.8
1,547,694	+				-1.6
1,547,700	+				-0.9
1,547,701	-				+0.1
1,547,701	-				-1.2
1,547,726	+				+0.0
1,547,739	-				-0.4
1,547,739	-				-1.3
1,547,739	-				-0.8
1,547,739	-				-0.7
1,547,794	+				+0.3
1,547,794	+				+0.2
1,547,794	+				-0.7
1,547,794	+				+0.5
1,547,795	-				-0.3
1,547,795	-				-0.8
1,547,809	-				+0.2
1,547,809	-				-1.2
1,547,809	-				-0.2
1,547,809	-				-0.2
1,547,827	+				+0.4
1,547,848	-				-1.1
1,547,852	+				-1.7
1,547,852	+				-1.2
1,547,852	+				-1.2
1,547,863	+				-1.3
1,547,864	-				-0.2
1,547,889	+				-0.2
1,547,890	-				-0.4
1,547,913	+				-0.6
1,547,913	+				+0.3
1,547,913	+				-1.8
1,547,914	-				-1.4
1,547,914	-				-0.8
1,547,914	-				-0.9
1,547,914	-				-0.6
1,547,915	+				+0.0
1,547,915	+				+0.9
1,547,915	+				-0.9
1,547,915	+				+1.8
1,547,915	+				-1.7
1,547,915	+				+0.8
1,547,915	+				-1.2
1,547,915	+				-0.6
1,547,915	+				-0.9
1,547,915	+				+0.0
1,547,915	+				-0.3
1,547,915	+				-0.2
1,547,915	+				-1.5
1,547,915	+				-0.7
1,547,915	+				-1.4
1,547,916	-				-1.0
1,547,916	-				-0.4
1,547,916	-				+3.2
1,547,916	-				+0.4
1,547,916	-				-0.7
1,547,916	-				-0.7
1,547,916	-				+1.4
1,547,916	-				+0.5
1,547,916	-				+1.9
1,547,916	-				+3.8
1,547,916	-				-0.6
1,547,916	-				-0.7
1,547,916	-				-1.2
1,547,916	-				-1.6
1,547,916	-				-0.2
1,547,916	-				-0.9
1,547,939	+		DZA65_RS07445	0.16	+0.9
1,547,939	+		DZA65_RS07445	0.16	-0.2
1,547,940	-		DZA65_RS07445	0.16	+0.4
1,547,967	-		DZA65_RS07445	0.23	-0.4
1,547,989	+		DZA65_RS07445	0.29	+0.8
1,548,039	+		DZA65_RS07445	0.42	-1.2
1,548,039	+		DZA65_RS07445	0.42	+0.4
1,548,039	+		DZA65_RS07445	0.42	+0.1
1,548,040	-		DZA65_RS07445	0.43	-1.1
1,548,040	-		DZA65_RS07445	0.43	-1.0
1,548,048	+		DZA65_RS07445	0.45	-0.6
1,548,049	-		DZA65_RS07445	0.45	-2.3
1,548,052	+		DZA65_RS07445	0.46	-1.2
1,548,052	+		DZA65_RS07445	0.46	-0.9
1,548,052	+		DZA65_RS07445	0.46	-0.4
1,548,052	+		DZA65_RS07445	0.46	+3.0
1,548,053	-		DZA65_RS07445	0.46	-1.3
1,548,053	-		DZA65_RS07445	0.46	-0.4
1,548,053	-		DZA65_RS07445	0.46	-0.9
1,548,079	+		DZA65_RS07445	0.53	-1.6
1,548,080	-		DZA65_RS07445	0.53	-2.5
1,548,080	-		DZA65_RS07445	0.53	+0.4
1,548,180	+		DZA65_RS07445	0.80	+0.0
1,548,181	-		DZA65_RS07445	0.80	-0.9
1,548,181	-				-0.6
1,548,181	-		DZA65_RS07445	0.80	+1.1
1,548,201	+		DZA65_RS07445	0.86	+0.8
1,548,201	+		DZA65_RS07445	0.86	-1.7
1,548,201	+		DZA65_RS07445	0.86	-0.3
1,548,201	+		DZA65_RS07445	0.86	-0.1
1,548,298	+				-0.3
1,548,298	+				+0.6
1,548,299	-				-0.2
1,548,303	+				-0.8
1,548,309	+				-1.2
1,548,309	+				-1.0
1,548,309	+				-2.9
1,548,309	+				-0.2
1,548,310	-				-0.2
1,548,310	-				-0.2
1,548,310	-				-0.0
1,548,310	-				-1.2
1,548,310	-				-2.3
1,548,310	-				-0.6
1,548,310	-				-1.7
1,548,310	-				+0.4
1,548,310	-				-0.6
1,548,311	+				-0.2
1,548,311	+				-0.9
1,548,311	+				-0.6
1,548,311	+				-1.6
1,548,311	+				-2.3
1,548,312	-				+0.4
1,548,312	-				+0.8
1,548,312	-				+3.0
1,548,312	-				-1.6
1,548,312	-				-0.9
1,548,313	+				+1.7
1,548,313	+				-1.0
1,548,313	+				-0.4
1,548,314	-				-1.7
1,548,314	-				-1.2
1,548,341	+				-1.4
1,548,341	+				+0.2
1,548,341	+				+1.4
1,548,341	+				+0.5
1,548,341	+				-1.4
1,548,341	+				-1.4
1,548,342	-				-2.6
1,548,342	-				-0.3
1,548,352	+				-1.1
1,548,353	-				-1.6
1,548,366	-				-1.6
1,548,368	+				+0.8
1,548,369	-				+0.6
1,548,470	+		DZA65_RS07450	0.34	+0.4
1,548,481	-		DZA65_RS07450	0.36	+0.1
1,548,524	+		DZA65_RS07450	0.47	+0.4
1,548,609	-		DZA65_RS07450	0.68	+0.0
1,548,615	+		DZA65_RS07450	0.69	+0.1
1,548,615	+		DZA65_RS07450	0.69	-1.4
1,548,635	+		DZA65_RS07450	0.74	-1.7
1,548,635	+		DZA65_RS07450	0.74	-0.2
1,548,635	+		DZA65_RS07450	0.74	+0.0
1,548,636	-		DZA65_RS07450	0.75	+2.9
1,548,681	-		DZA65_RS07450	0.86	+1.4
1,548,681	-		DZA65_RS07450	0.86	+1.9
1,548,681	-		DZA65_RS07450	0.86	-0.6
1,548,708	-				-0.2
1,548,708	-				+0.4
1,548,711	+				+0.8
1,548,711	+				-1.3
1,548,712	-				+1.7
1,548,712	-				-0.5
1,548,728	-				-1.4
1,548,788	+				-0.6
1,548,842	-				-0.7
1,548,855	+				-0.7
1,548,856	-				-0.2
1,548,967	-				-1.4
1,548,967	-				+3.0
1,548,970	+				-0.3
1,548,970	+				+0.3
1,548,970	+				-0.9
1,549,021	+				+0.1
1,549,021	+				-2.5
1,549,021	+				+0.2
1,549,021	+				-1.6
1,549,022	-				-1.6
1,549,022	-				-1.2
1,549,022	-				-0.4
1,549,025	+				-0.7
1,549,026	-				-1.2
1,549,036	+				-1.2
1,549,061	+				+0.6
1,549,062	-				-1.5
1,549,077	-				-0.2
1,549,077	-				-1.4
1,549,104	-				+2.0
1,549,190	+				-0.8
1,549,206	+				-0.2
1,549,267	-				+0.9
1,549,294	+				-0.2
1,549,294	+				-1.9
1,549,294	+				+1.0
1,549,294	+				-0.7
1,549,294	+				+0.1
1,549,294	+				+1.1
1,549,294	+				-0.5
1,549,294	+				+2.4
1,549,295	-				+0.8
1,549,295	-				+0.4
1,549,295	-				+1.0
1,549,295	-				+2.4
1,549,315	+				-0.8
1,549,316	-				+0.4
1,549,395	-		DZA65_RS07455	0.17	-1.2
1,549,395	-		DZA65_RS07455	0.17	-1.4
1,549,405	+		DZA65_RS07455	0.18	-1.4
1,549,405	+		DZA65_RS07455	0.18	+0.2
1,549,406	-		DZA65_RS07455	0.18	-0.7
1,549,406	-		DZA65_RS07455	0.18	-0.6
1,549,406	-		DZA65_RS07455	0.18	-0.3
1,549,406	-		DZA65_RS07455	0.18	-1.8
1,549,406	-		DZA65_RS07455	0.18	-0.4
1,549,406	-		DZA65_RS07455	0.18	-0.9
1,549,406	-		DZA65_RS07455	0.18	+1.0
1,549,406	-		DZA65_RS07455	0.18	-0.2
1,549,530	+		DZA65_RS07455	0.31	+0.8
1,549,530	+		DZA65_RS07455	0.31	+1.4
1,549,530	+		DZA65_RS07455	0.31	-0.6
1,549,530	+		DZA65_RS07455	0.31	-0.9
1,549,530	+		DZA65_RS07455	0.31	-1.0
1,549,530	+		DZA65_RS07455	0.31	-1.9
1,549,530	+		DZA65_RS07455	0.31	-1.0
1,549,530	+		DZA65_RS07455	0.31	+0.2
1,549,531	-		DZA65_RS07455	0.31	-1.7
1,549,531	-		DZA65_RS07455	0.31	+0.9
1,549,531	-		DZA65_RS07455	0.31	-0.4
1,549,531	-		DZA65_RS07455	0.31	-2.3
1,549,531	-		DZA65_RS07455	0.31	+0.4
1,549,531	-		DZA65_RS07455	0.31	-0.2
1,549,531	-		DZA65_RS07455	0.31	+2.0
1,549,531	-		DZA65_RS07455	0.31	-0.2
1,549,533	-		DZA65_RS07455	0.31	-0.9
1,549,533	-		DZA65_RS07455	0.31	+0.2
1,549,533	-		DZA65_RS07455	0.31	-1.2
1,549,594	-		DZA65_RS07455	0.37	-0.2
1,549,594	-		DZA65_RS07455	0.37	-1.4
1,549,594	-		DZA65_RS07455	0.37	-0.2
1,549,628	+		DZA65_RS07455	0.41	-1.2
1,549,667	-		DZA65_RS07455	0.45	-0.6