Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07440

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,545,795	+		DZA65_RS07430	0.57	-0.6
1,545,795	+		DZA65_RS07430	0.57	+3.2
1,545,795	+				+0.8
1,545,796	-		DZA65_RS07430	0.57	-0.9
1,545,796	-		DZA65_RS07430	0.57	-0.2
1,545,796	-		DZA65_RS07430	0.57	-0.6
1,545,796	-		DZA65_RS07430	0.57	-1.7
1,545,829	+		DZA65_RS07430	0.66	-0.6
1,545,829	+		DZA65_RS07430	0.66	+0.1
1,545,829	+		DZA65_RS07430	0.66	-2.0
1,545,829	+		DZA65_RS07430	0.66	-0.7
1,545,829	+		DZA65_RS07430	0.66	-1.7
1,545,830	-		DZA65_RS07430	0.66	-2.9
1,545,830	-		DZA65_RS07430	0.66	-1.2
1,545,901	+		DZA65_RS07430	0.86	+0.4
1,545,901	+		DZA65_RS07430	0.86	-0.5
1,545,901	+		DZA65_RS07430	0.86	-0.8
1,545,901	+		DZA65_RS07430	0.86	-1.3
1,545,901	+		DZA65_RS07430	0.86	+1.4
1,545,901	+		DZA65_RS07430	0.86	-0.2
1,545,902	-		DZA65_RS07430	0.86	+1.2
1,545,902	-		DZA65_RS07430	0.86	-1.6
1,545,902	-				-0.2
1,545,909	+		DZA65_RS07430	0.88	-1.2
1,545,909	+		DZA65_RS07430	0.88	-0.9
1,545,981	+				-0.2
1,545,983	+				-1.4
1,546,005	-				-0.2
1,546,065	+		DZA65_RS07435	0.19	+0.4
1,546,066	-		DZA65_RS07435	0.19	+0.7
1,546,066	-		DZA65_RS07435	0.19	-0.4
1,546,084	-		DZA65_RS07435	0.24	+0.7
1,546,125	-		DZA65_RS07435	0.36	-0.2
1,546,125	-		DZA65_RS07435	0.36	+0.4
1,546,176	+		DZA65_RS07435	0.50	-1.9
1,546,177	-		DZA65_RS07435	0.51	-0.7
1,546,284	+		DZA65_RS07435	0.81	-1.2
1,546,284	+		DZA65_RS07435	0.81	-1.7
1,546,285	-		DZA65_RS07435	0.81	+0.8
1,546,291	-		DZA65_RS07435	0.83	-1.8
1,546,292	+		DZA65_RS07435	0.83	+0.0
1,546,342	-				+1.4
1,546,351	-				+0.1
1,546,351	-				+0.1
1,546,351	-				-0.9
1,546,369	-				+1.3
1,546,451	+				-0.9
1,546,452	-				+0.6
1,546,458	+				-1.7
1,546,458	+				-0.8
1,546,458	+				+0.4
1,546,459	-				-1.7
1,546,480	+				+0.1
1,546,496	+				+0.4
1,546,496	+				-2.0
1,546,496	+				-0.4
1,546,497	-				+0.4
1,546,497	-				-2.2
1,546,530	+				-1.2
1,546,530	+				+1.0
1,546,533	+				-0.2
1,546,533	+				-0.2
1,546,555	-				-0.6
1,546,568	-				-1.2
1,546,568	-				+0.6
1,546,571	+				+0.2
1,546,571	+				+0.1
1,546,571	+				+0.4
1,546,572	-				-0.9
1,546,572	-				+0.2
1,546,572	-				-1.9
1,546,596	+				+0.2
1,546,596	+				-0.2
1,546,596	+				-0.4
1,546,596	+				+0.4
1,546,596	+				-0.9
1,546,597	-				-1.2
1,546,621	+				+0.4
1,546,621	+				-0.6
1,546,622	-				-1.6
1,546,640	-				-0.4
1,546,677	-				-0.2
1,546,684	+				+1.0
1,546,914	+		DZA65_RS07440	0.27	-0.5
1,547,319	-		DZA65_RS07440	0.75	-0.7
1,547,394	+		DZA65_RS07440	0.84	-1.0
1,547,395	-		DZA65_RS07440	0.84	-0.2
1,547,473	+				+0.8
1,547,482	-				-1.0
1,547,487	+				-0.7
1,547,488	-				-1.9
1,547,557	+				+0.3
1,547,557	+				+0.7
1,547,557	+				+0.4
1,547,557	+				-0.9
1,547,557	+				+0.0
1,547,557	+				-1.2
1,547,557	+				-0.2
1,547,558	-				-0.2
1,547,558	-				-0.4
1,547,558	-				-0.7
1,547,558	-				+0.4
1,547,558	-				+0.2
1,547,558	-				-1.3
1,547,558	-				-1.2
1,547,593	+				+0.0
1,547,603	+				-1.2
1,547,603	+				+0.1
1,547,604	-				+0.4
1,547,610	+				+0.3
1,547,610	+				+1.0
1,547,610	+				-0.2
1,547,610	+				+0.0
1,547,610	+				-0.6
1,547,610	+				+0.2
1,547,610	+				+0.4
1,547,610	+				-0.2
1,547,610	+				+1.1
1,547,611	-				-1.0
1,547,611	-				-1.6
1,547,611	-				-0.9
1,547,611	-				+0.0
1,547,611	-				+1.4
1,547,611	-				-0.7
1,547,611	-				+1.1
1,547,612	+				+0.4
1,547,612	+				+2.5
1,547,612	+				-0.2
1,547,612	+				+1.1
1,547,612	+				+1.1
1,547,613	-				-0.6
1,547,613	-				+1.4
1,547,613	-				+0.8
1,547,613	-				-0.8
1,547,613	-				+2.0
1,547,613	-				-0.6
1,547,613	-				+1.4
1,547,613	-				-0.4
1,547,613	-				-0.9
1,547,613	-				-1.4
1,547,613	-				-2.3
1,547,613	-				+0.7
1,547,640	+				-0.7
1,547,640	+				-0.9
1,547,640	+				-1.2
1,547,640	+				-1.4
1,547,640	+				+0.2
1,547,640	+				-0.2
1,547,640	+				-0.6
1,547,640	+				-0.9
1,547,641	-				-1.7
1,547,641	-				-0.6
1,547,641	-				-0.2
1,547,641	-				+0.8
1,547,648	-				-1.2
1,547,648	-				-1.6
1,547,648	-				-0.8
1,547,694	+				-1.6
1,547,700	+				-0.9
1,547,701	-				+0.1
1,547,701	-				-1.2
1,547,726	+				+0.0
1,547,739	-				-0.4
1,547,739	-				-1.3
1,547,739	-				-0.8
1,547,739	-				-0.7
1,547,794	+				+0.3
1,547,794	+				+0.2
1,547,794	+				-0.7
1,547,794	+				+0.5
1,547,795	-				-0.3
1,547,795	-				-0.8
1,547,809	-				+0.2
1,547,809	-				-1.2
1,547,809	-				-0.2
1,547,809	-				-0.2
1,547,827	+				+0.4
1,547,848	-				-1.1
1,547,852	+				-1.7
1,547,852	+				-1.2
1,547,852	+				-1.2
1,547,863	+				-1.3
1,547,864	-				-0.2
1,547,889	+				-0.2
1,547,890	-				-0.4
1,547,913	+				-0.6
1,547,913	+				+0.3
1,547,913	+				-1.8
1,547,914	-				-1.4
1,547,914	-				-0.8
1,547,914	-				-0.9
1,547,914	-				-0.6
1,547,915	+				+0.0
1,547,915	+				+0.9
1,547,915	+				-0.9
1,547,915	+				+1.8
1,547,915	+				-1.7
1,547,915	+				+0.8
1,547,915	+				-1.2
1,547,915	+				-0.6
1,547,915	+				-0.9
1,547,915	+				+0.0
1,547,915	+				-0.3
1,547,915	+				-0.2
1,547,915	+				-1.5
1,547,915	+				-0.7
1,547,915	+				-1.4
1,547,916	-				-1.0
1,547,916	-				-0.4
1,547,916	-				+3.2
1,547,916	-				+0.4
1,547,916	-				-0.7
1,547,916	-				-0.7
1,547,916	-				+1.4
1,547,916	-				+0.5
1,547,916	-				+1.9
1,547,916	-				+3.8
1,547,916	-				-0.6
1,547,916	-				-0.7
1,547,916	-				-1.2
1,547,916	-				-1.6
1,547,916	-				-0.2
1,547,916	-				-0.9
1,547,939	+		DZA65_RS07445	0.16	+0.9
1,547,939	+		DZA65_RS07445	0.16	-0.2
1,547,940	-		DZA65_RS07445	0.16	+0.4
1,547,967	-		DZA65_RS07445	0.23	-0.4
1,547,989	+		DZA65_RS07445	0.29	+0.8
1,548,039	+		DZA65_RS07445	0.42	-1.2
1,548,039	+		DZA65_RS07445	0.42	+0.4
1,548,039	+		DZA65_RS07445	0.42	+0.1
1,548,040	-		DZA65_RS07445	0.43	-1.1
1,548,040	-		DZA65_RS07445	0.43	-1.0
1,548,048	+		DZA65_RS07445	0.45	-0.6
1,548,049	-		DZA65_RS07445	0.45	-2.3
1,548,052	+		DZA65_RS07445	0.46	-1.2
1,548,052	+		DZA65_RS07445	0.46	-0.9
1,548,052	+		DZA65_RS07445	0.46	-0.4
1,548,052	+		DZA65_RS07445	0.46	+3.0
1,548,053	-		DZA65_RS07445	0.46	-1.3
1,548,053	-		DZA65_RS07445	0.46	-0.4
1,548,053	-		DZA65_RS07445	0.46	-0.9
1,548,079	+		DZA65_RS07445	0.53	-1.6
1,548,080	-		DZA65_RS07445	0.53	-2.5
1,548,080	-		DZA65_RS07445	0.53	+0.4
1,548,180	+		DZA65_RS07445	0.80	+0.0
1,548,181	-		DZA65_RS07445	0.80	-0.9
1,548,181	-				-0.6
1,548,181	-		DZA65_RS07445	0.80	+1.1
1,548,201	+		DZA65_RS07445	0.86	+0.8
1,548,201	+		DZA65_RS07445	0.86	-1.7
1,548,201	+		DZA65_RS07445	0.86	-0.3
1,548,201	+		DZA65_RS07445	0.86	-0.1
1,548,298	+				-0.3
1,548,298	+				+0.6
1,548,299	-				-0.2
1,548,303	+				-0.8
1,548,309	+				-1.2
1,548,309	+				-1.0
1,548,309	+				-2.9
1,548,309	+				-0.2
1,548,310	-				-0.2
1,548,310	-				-0.2
1,548,310	-				-0.0
1,548,310	-				-1.2
1,548,310	-				-2.3
1,548,310	-				-0.6
1,548,310	-				-1.7
1,548,310	-				+0.4
1,548,310	-				-0.6
1,548,311	+				-0.2
1,548,311	+				-0.9
1,548,311	+				-0.6
1,548,311	+				-1.6
1,548,311	+				-2.3
1,548,312	-				+0.4
1,548,312	-				+0.8
1,548,312	-				+3.0
1,548,312	-				-1.6
1,548,312	-				-0.9
1,548,313	+				+1.7
1,548,313	+				-1.0
1,548,313	+				-0.4
1,548,314	-				-1.7
1,548,314	-				-1.2
1,548,341	+				-1.4
1,548,341	+				+0.2
1,548,341	+				+1.4
1,548,341	+				+0.5
1,548,341	+				-1.4
1,548,341	+				-1.4
1,548,342	-				-2.6
1,548,342	-				-0.3
1,548,352	+				-1.1
1,548,353	-				-1.6
1,548,366	-				-1.6
1,548,368	+				+0.8
1,548,369	-				+0.6
1,548,470	+		DZA65_RS07450	0.34	+0.4
1,548,481	-		DZA65_RS07450	0.36	+0.1
1,548,524	+		DZA65_RS07450	0.47	+0.4