Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07380

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,535,956	+				-1.2
1,535,957	-				+1.4
1,535,957	-				-0.2
1,535,966	-				+0.4
1,535,997	+				+1.4
1,535,997	+				-0.2
1,535,998	-				-1.6
1,535,998	-				-0.9
1,536,049	+				+0.1
1,536,049	+				-1.1
1,536,050	-				-0.9
1,536,099	+				-1.2
1,536,143	+				-0.2
1,536,143	+				-0.8
1,536,143	+				-0.4
1,536,143	+				+0.4
1,536,144	-				-1.2
1,536,144	-				+4.6
1,536,144	-				-3.0
1,536,176	+		DZA65_RS07375	0.11	+0.9
1,536,195	+		DZA65_RS07375	0.15	-0.4
1,536,195	+		DZA65_RS07375	0.15	+0.1
1,536,195	+		DZA65_RS07375	0.15	-0.8
1,536,196	-		DZA65_RS07375	0.15	+0.6
1,536,196	-		DZA65_RS07375	0.15	-0.1
1,536,270	+		DZA65_RS07375	0.27	-0.2
1,536,270	+		DZA65_RS07375	0.27	+0.8
1,536,270	+		DZA65_RS07375	0.27	-0.9
1,536,270	+		DZA65_RS07375	0.27	-2.5
1,536,270	+		DZA65_RS07375	0.27	-2.2
1,536,270	+		DZA65_RS07375	0.27	-0.2
1,536,270	+		DZA65_RS07375	0.27	+2.8
1,536,270	+		DZA65_RS07375	0.27	-0.2
1,536,270	+		DZA65_RS07375	0.27	-0.4
1,536,270	+		DZA65_RS07375	0.27	-0.0
1,536,270	+		DZA65_RS07375	0.27	-0.1
1,536,270	+		DZA65_RS07375	0.27	-1.9
1,536,270	+		DZA65_RS07375	0.27	-0.6
1,536,271	-		DZA65_RS07375	0.27	+0.2
1,536,271	-		DZA65_RS07375	0.27	-1.4
1,536,271	-		DZA65_RS07375	0.27	-1.2
1,536,271	-		DZA65_RS07375	0.27	-0.5
1,536,271	-				+0.4
1,536,271	-		DZA65_RS07375	0.27	+2.8
1,536,271	-		DZA65_RS07375	0.27	-1.6
1,536,272	+		DZA65_RS07375	0.27	-0.3
1,536,273	-		DZA65_RS07375	0.28	-0.2
1,536,278	+		DZA65_RS07375	0.28	-1.1
1,536,278	+		DZA65_RS07375	0.28	-0.7
1,536,278	+		DZA65_RS07375	0.28	-0.9
1,536,278	+		DZA65_RS07375	0.28	-0.2
1,536,278	+		DZA65_RS07375	0.28	-1.4
1,536,278	+		DZA65_RS07375	0.28	-1.9
1,536,278	+		DZA65_RS07375	0.28	-0.0
1,536,279	-		DZA65_RS07375	0.29	-0.6
1,536,279	-		DZA65_RS07375	0.29	-1.5
1,536,279	-		DZA65_RS07375	0.29	-1.8
1,536,279	-		DZA65_RS07375	0.29	+0.4
1,536,280	+		DZA65_RS07375	0.29	-0.6
1,536,281	-		DZA65_RS07375	0.29	-0.1
1,536,281	-		DZA65_RS07375	0.29	-1.2
1,536,281	-		DZA65_RS07375	0.29	+0.4
1,536,281	-		DZA65_RS07375	0.29	-0.9
1,536,319	+		DZA65_RS07375	0.35	-0.4
1,536,319	+		DZA65_RS07375	0.35	-2.0
1,536,320	-		DZA65_RS07375	0.35	+2.8
1,536,450	+		DZA65_RS07375	0.57	-0.2
1,536,451	-		DZA65_RS07375	0.57	-0.2
1,536,451	-		DZA65_RS07375	0.57	-2.7
1,536,457	+		DZA65_RS07375	0.58	-0.2
1,536,457	+		DZA65_RS07375	0.58	-0.9
1,536,457	+				+0.2
1,536,457	+		DZA65_RS07375	0.58	+0.4
1,536,458	-		DZA65_RS07375	0.58	-0.6
1,536,458	-		DZA65_RS07375	0.58	+1.4
1,536,459	+		DZA65_RS07375	0.58	-0.2
1,536,459	+		DZA65_RS07375	0.58	-3.6
1,536,459	+		DZA65_RS07375	0.58	-0.2
1,536,459	+		DZA65_RS07375	0.58	+1.4
1,536,459	+		DZA65_RS07375	0.58	+0.7
1,536,459	+		DZA65_RS07375	0.58	+0.4
1,536,459	+		DZA65_RS07375	0.58	-1.8
1,536,459	+		DZA65_RS07375	0.58	-0.6
1,536,459	+		DZA65_RS07375	0.58	-0.9
1,536,460	-		DZA65_RS07375	0.59	-0.9
1,536,460	-		DZA65_RS07375	0.59	+1.4
1,536,460	-		DZA65_RS07375	0.59	+1.1
1,536,474	+		DZA65_RS07375	0.61	-1.2
1,536,474	+		DZA65_RS07375	0.61	-0.5
1,536,475	-		DZA65_RS07375	0.61	-1.2
1,536,475	-		DZA65_RS07375	0.61	-0.7
1,536,493	+		DZA65_RS07375	0.64	-0.9
1,536,494	-		DZA65_RS07375	0.64	-1.2
1,536,494	-		DZA65_RS07375	0.64	-0.2
1,536,494	-		DZA65_RS07375	0.64	+0.2
1,536,503	+		DZA65_RS07375	0.66	-0.9
1,536,504	-		DZA65_RS07375	0.66	+1.0
1,536,536	+		DZA65_RS07375	0.71	-0.2
1,536,537	-		DZA65_RS07375	0.71	-0.2
1,536,542	+		DZA65_RS07375	0.72	+0.8
1,536,542	+		DZA65_RS07375	0.72	+0.4
1,536,543	-		DZA65_RS07375	0.72	-0.4
1,536,543	-		DZA65_RS07375	0.72	-0.6
1,536,592	+		DZA65_RS07375	0.80	-0.2
1,536,658	+				-0.5
1,536,658	+				-0.4
1,536,658	+				-0.2
1,536,658	+				+0.3
1,536,658	+				-1.2
1,536,659	-				+0.1
1,536,659	-				-1.2
1,536,659	-				-1.2
1,536,659	-				+0.4
1,536,671	+				-0.7
1,536,703	+				+0.8
1,536,703	+				-0.5
1,536,704	-				-1.4
1,536,711	+				-0.2
1,536,711	+				-0.2
1,536,712	-				-0.3
1,536,712	-				-0.3
1,536,712	-				-0.6
1,536,712	-				-2.6
1,536,712	-				-1.7
1,536,712	-				+0.4
1,536,847	+				+1.4
1,536,847	+				+0.8
1,536,847	+				-2.8
1,536,847	+				+0.8
1,536,847	+				+0.8
1,536,848	-				-0.7
1,536,848	-				+0.4
1,536,848	-				-1.4
1,536,848	-				-0.2
1,536,848	-				-0.5
1,536,848	-				-0.6
1,536,848	-				+0.4
1,536,848	-				+1.4
1,536,851	+				+1.4
1,536,851	+				-0.6
1,536,851	+				-1.7
1,536,851	+				+0.0
1,536,864	+				-0.9
1,536,865	-				-0.2
1,536,866	+				-1.2
1,536,906	+				-0.6
1,536,906	+				+0.3
1,536,914	-				+2.0
1,537,016	+		DZA65_RS07380	0.15	-0.6
1,537,016	+		DZA65_RS07380	0.15	+0.8
1,537,016	+		DZA65_RS07380	0.15	+0.6
1,537,016	+		DZA65_RS07380	0.15	+2.4
1,537,017	-		DZA65_RS07380	0.15	-0.8
1,537,017	-		DZA65_RS07380	0.15	-0.0
1,537,019	+		DZA65_RS07380	0.15	+0.4
1,537,051	+		DZA65_RS07380	0.22	-1.5
1,537,051	+		DZA65_RS07380	0.22	-0.6
1,537,052	-		DZA65_RS07380	0.22	-0.7
1,537,052	-		DZA65_RS07380	0.22	+1.4
1,537,053	+		DZA65_RS07380	0.22	+5.3
1,537,073	+		DZA65_RS07380	0.26	-2.6
1,537,073	+				-1.2
1,537,094	+		DZA65_RS07380	0.30	-0.7
1,537,094	+		DZA65_RS07380	0.30	-2.1
1,537,095	-		DZA65_RS07380	0.30	+0.1
1,537,095	-		DZA65_RS07380	0.30	-1.2
1,537,116	+		DZA65_RS07380	0.35	-1.7
1,537,116	+		DZA65_RS07380	0.35	+0.7
1,537,117	-		DZA65_RS07380	0.35	-0.9
1,537,117	-		DZA65_RS07380	0.35	-1.6
1,537,135	-		DZA65_RS07380	0.38	-0.6
1,537,204	-		DZA65_RS07380	0.52	-1.7
1,537,204	-		DZA65_RS07380	0.52	+0.8
1,537,204	-		DZA65_RS07380	0.52	+1.8
1,537,232	+		DZA65_RS07380	0.58	+2.4
1,537,232	+		DZA65_RS07380	0.58	-2.5
1,537,278	-		DZA65_RS07380	0.67	-1.0
1,537,278	-		DZA65_RS07380	0.67	-1.0
1,537,301	+				+1.4
1,537,320	+		DZA65_RS07380	0.75	+0.8
1,537,387	+		DZA65_RS07380	0.89	+0.2
1,537,387	+		DZA65_RS07380	0.89	-0.2
1,537,387	+		DZA65_RS07380	0.89	-0.4
1,537,387	+		DZA65_RS07380	0.89	+1.2
1,537,387	+		DZA65_RS07380	0.89	-0.6
1,537,387	+		DZA65_RS07380	0.89	-0.9
1,537,387	+		DZA65_RS07380	0.89	-0.6
1,537,387	+		DZA65_RS07380	0.89	-2.0
1,537,387	+		DZA65_RS07380	0.89	+0.2
1,537,387	+		DZA65_RS07380	0.89	+0.1
1,537,387	+		DZA65_RS07380	0.89	+0.8
1,537,387	+		DZA65_RS07380	0.89	+1.6
1,537,387	+		DZA65_RS07380	0.89	-2.0
1,537,387	+		DZA65_RS07380	0.89	-0.4
1,537,388	-		DZA65_RS07380	0.89	-0.6
1,537,388	-		DZA65_RS07380	0.89	-0.3
1,537,388	-		DZA65_RS07380	0.89	-1.2
1,537,388	-		DZA65_RS07380	0.89	+0.3
1,537,388	-		DZA65_RS07380	0.89	-1.6
1,537,388	-		DZA65_RS07380	0.89	-0.7
1,537,388	-		DZA65_RS07380	0.89	+0.2
1,537,388	-		DZA65_RS07380	0.89	-1.6
1,537,388	-		DZA65_RS07380	0.89	+0.1
1,537,388	-		DZA65_RS07380	0.89	+1.4
1,537,388	-		DZA65_RS07380	0.89	-0.7
1,537,388	-		DZA65_RS07380	0.89	+1.4
1,537,388	-		DZA65_RS07380	0.89	-0.6
1,537,388	-		DZA65_RS07380	0.89	-1.2
1,537,388	-		DZA65_RS07380	0.89	+1.4
1,537,388	-		DZA65_RS07380	0.89	-2.1
1,537,388	-		DZA65_RS07380	0.89	+0.1
1,537,388	-		DZA65_RS07380	0.89	+0.1
1,537,388	-		DZA65_RS07380	0.89	-0.9
1,537,388	-		DZA65_RS07380	0.89	-1.4
1,537,388	-		DZA65_RS07380	0.89	+0.4
1,537,388	-		DZA65_RS07380	0.89	-0.2
1,537,389	+		DZA65_RS07380	0.89	+0.4
1,537,390	-		DZA65_RS07380	0.89	-1.6
1,537,430	+				-1.2
1,537,430	+				-2.6
1,537,430	+				-1.0
1,537,430	+				-0.4
1,537,441	+				-0.2
1,537,441	+				-2.2
1,537,442	-				-1.0
1,537,484	+				-1.2
1,537,484	+				+0.4
1,537,484	+				-1.4
1,537,485	-				-1.3
1,537,485	-				-0.2
1,537,485	-				+1.0
1,537,543	+				+2.1
1,537,543	+				-0.2
1,537,544	-				-0.7
1,537,544	-				-0.4
1,537,565	+				+0.1
1,537,565	+				-1.1
1,537,565	+				+0.7
1,537,565	+				+1.6
1,537,565	+				-0.4
1,537,566	-				+0.5
1,537,566	-				-1.2
1,537,566	-				-2.4
1,537,566	-				-2.3
1,537,569	+				-0.9
1,537,569	+				-0.9
1,537,569	+				-0.9
1,537,569	+				+1.4
1,537,569	+				+0.1
1,537,569	+				-0.2
1,537,569	+				-2.3
1,537,569	+				-1.4
1,537,569	+				+1.8
1,537,570	-				-1.6
1,537,570	-				-0.2
1,537,575	+				+1.4
1,537,575	+				-1.3
1,537,575	+				+0.6
1,537,576	-				-0.2
1,537,576	-				-0.2
1,537,576	-				+0.1
1,537,604	+				-1.8
1,537,614	+				+0.4
1,537,614	+				+1.0
1,537,615	-				-2.5
1,537,615	-				-1.8
1,537,615	-				-1.9
1,537,704	+		DZA65_RS07385	0.18	+2.0
1,537,704	+		DZA65_RS07385	0.18	-0.5
1,537,704	+		DZA65_RS07385	0.18	+0.8
1,537,704	+		DZA65_RS07385	0.18	+0.1
1,537,704	+		DZA65_RS07385	0.18	-0.2
1,537,704	+		DZA65_RS07385	0.18	+1.4
1,537,705	-		DZA65_RS07385	0.18	-1.2
1,537,705	-		DZA65_RS07385	0.18	-0.3
1,537,705	-		DZA65_RS07385	0.18	-0.5
1,537,705	-		DZA65_RS07385	0.18	-0.2
1,537,705	-		DZA65_RS07385	0.18	-0.2
1,537,705	-		DZA65_RS07385	0.18	-1.2
1,537,707	+		DZA65_RS07385	0.18	+1.8
1,537,708	-		DZA65_RS07385	0.18	+0.4
1,537,791	+		DZA65_RS07385	0.31	-1.0
1,537,793	+		DZA65_RS07385	0.31	+0.4
1,537,793	+		DZA65_RS07385	0.31	-1.0
1,537,793	+		DZA65_RS07385	0.31	-2.5
1,537,793	+		DZA65_RS07385	0.31	+2.9
1,537,793	+		DZA65_RS07385	0.31	+5.6
1,537,793	+		DZA65_RS07385	0.31	+0.1
1,537,793	+		DZA65_RS07385	0.31	-1.2
1,537,793	+		DZA65_RS07385	0.31	-1.6
1,537,793	+		DZA65_RS07385	0.31	-2.6
1,537,793	+		DZA65_RS07385	0.31	+0.4
1,537,793	+		DZA65_RS07385	0.31	-0.2
1,537,793	+		DZA65_RS07385	0.31	-0.5
1,537,794	-		DZA65_RS07385	0.31	+0.4
1,537,794	-		DZA65_RS07385	0.31	-0.2
1,537,794	-		DZA65_RS07385	0.31	-2.0
1,537,794	-		DZA65_RS07385	0.31	-0.2
1,537,794	-		DZA65_RS07385	0.31	+1.9
1,537,794	-		DZA65_RS07385	0.31	-0.6
1,537,794	-		DZA65_RS07385	0.31	-0.6
1,537,794	-		DZA65_RS07385	0.31	+0.1
1,537,794	-		DZA65_RS07385	0.31	+2.2
1,537,794	-		DZA65_RS07385	0.31	-1.0
1,537,794	-		DZA65_RS07385	0.31	-0.1
1,537,826	+		DZA65_RS07385	0.36	-0.2
1,537,826	+		DZA65_RS07385	0.36	+0.7
1,537,827	-		DZA65_RS07385	0.37	-1.6
1,537,827	-		DZA65_RS07385	0.37	-1.8
1,537,827	-		DZA65_RS07385	0.37	-1.4
1,537,832	-		DZA65_RS07385	0.37	-2.1
1,537,859	-		DZA65_RS07385	0.42	-2.8
1,538,050	+		DZA65_RS07385	0.71	+0.2
1,538,050	+		DZA65_RS07385	0.71	+1.2
1,538,051	-				-0.6
1,538,051	-		DZA65_RS07385	0.71	-2.5
1,538,051	-		DZA65_RS07385	0.71	-3.1
1,538,138	+		DZA65_RS07385	0.85	-0.2
1,538,138	+		DZA65_RS07385	0.85	-1.2
1,538,138	+		DZA65_RS07385	0.85	-1.2
1,538,139	-		DZA65_RS07385	0.85	-0.6
1,538,139	-		DZA65_RS07385	0.85	-0.0
1,538,169	-		DZA65_RS07385	0.90	+2.0
1,538,234	-				-0.6
1,538,351	-				-0.3