Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07225

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,501,441	+		DZA65_RS07215	0.88	+1.0
1,501,483	+				-1.4
1,501,483	+				-0.9
1,501,540	-				-1.4
1,501,583	+				+1.4
1,501,583	+				-1.1
1,501,587	+				+0.0
1,501,587	+				-0.6
1,501,587	+				-1.9
1,501,588	-				-0.1
1,501,613	-				-0.9
1,501,680	+				+0.1
1,501,689	+				+1.1
1,501,731	+		DZA65_RS07220	0.11	-1.0
1,501,731	+		DZA65_RS07220	0.11	-0.5
1,501,731	+		DZA65_RS07220	0.11	-0.7
1,501,731	+		DZA65_RS07220	0.11	+0.2
1,501,731	+		DZA65_RS07220	0.11	-1.4
1,501,732	-		DZA65_RS07220	0.11	-1.6
1,501,732	-		DZA65_RS07220	0.11	-1.3
1,501,732	-		DZA65_RS07220	0.11	-0.7
1,501,732	-		DZA65_RS07220	0.11	-1.1
1,501,896	+		DZA65_RS07220	0.45	+0.0
1,501,897	-				-0.1
1,501,905	+		DZA65_RS07220	0.47	+0.9
1,501,905	+		DZA65_RS07220	0.47	-0.0
1,501,905	+		DZA65_RS07220	0.47	-0.4
1,501,905	+		DZA65_RS07220	0.47	-1.0
1,501,905	+		DZA65_RS07220	0.47	+0.2
1,501,906	-		DZA65_RS07220	0.47	-1.1
1,501,939	+		DZA65_RS07220	0.53	+0.4
1,501,939	+		DZA65_RS07220	0.53	+0.8
1,501,940	-		DZA65_RS07220	0.54	-1.7
1,501,940	-		DZA65_RS07220	0.54	+0.2
1,501,940	-		DZA65_RS07220	0.54	-0.9
1,501,940	-		DZA65_RS07220	0.54	-2.4
1,501,940	-		DZA65_RS07220	0.54	-1.5
1,501,940	-		DZA65_RS07220	0.54	-0.1
1,501,980	+		DZA65_RS07220	0.62	-0.4
1,501,980	+		DZA65_RS07220	0.62	-1.7
1,501,981	-		DZA65_RS07220	0.62	+0.1
1,501,981	-		DZA65_RS07220	0.62	+0.7
1,502,030	-		DZA65_RS07220	0.72	+1.4
1,502,030	-		DZA65_RS07220	0.72	-1.4
1,502,058	+		DZA65_RS07220	0.78	-2.7
1,502,058	+		DZA65_RS07220	0.78	+0.4
1,502,058	+		DZA65_RS07220	0.78	+0.4
1,502,059	-		DZA65_RS07220	0.78	-0.8
1,502,059	-		DZA65_RS07220	0.78	-0.6
1,502,070	+		DZA65_RS07220	0.80	+0.4
1,502,071	-		DZA65_RS07220	0.81	+2.3
1,502,153	-				+0.4
1,502,164	+				-1.4
1,502,164	+				-0.9
1,502,164	+				-0.1
1,502,164	+				-1.1
1,502,164	+				+0.3
1,502,164	+				+1.4
1,502,165	-				-0.0
1,502,165	-				-0.6
1,502,165	-				-1.4
1,502,165	-				+2.4
1,502,165	-				+1.4
1,502,165	-				+0.4
1,502,165	-				+0.4
1,502,165	-				-0.1
1,502,165	-				-0.9
1,502,165	-				-0.5
1,502,165	-				-0.1
1,502,165	-				-0.4
1,502,165	-				-1.6
1,502,166	+				-1.8
1,502,166	+				+2.1
1,502,166	+				-0.4
1,502,166	+				+0.3
1,502,166	+				+0.1
1,502,166	+				-0.1
1,502,166	+				+0.9
1,502,166	+				-0.1
1,502,166	+				-1.0
1,502,166	+				+1.4
1,502,166	+				+2.1
1,502,167	-				-2.0
1,502,167	-				-0.7
1,502,167	-				+2.0
1,502,167	-				-1.7
1,502,167	-				-0.6
1,502,167	-				+0.4
1,502,167	-				-1.1
1,502,167	-				-0.7
1,502,167	-				+0.1
1,502,167	-				+0.0
1,502,167	-				-1.3
1,502,167	-				-1.1
1,502,261	+				-2.6
1,502,261	+				-0.9
1,502,261	+				-1.7
1,502,262	-				-0.6
1,502,262	-				-0.4
1,502,282	-				-0.1
1,502,311	+				+0.4
1,502,312	-				-1.3
1,502,312	-				-0.4
1,502,312	-				-0.1
1,502,312	-				-0.4
1,502,313	+				+0.4
1,502,314	-				-0.1
1,502,314	-				-1.3
1,502,331	-				-0.6
1,502,331	-				+0.4
1,502,495	+				-0.4
1,502,495	+				+5.7
1,502,495	+				-1.4
1,502,496	-				-0.6
1,502,496	-				+2.2
1,502,496	-				-0.6
1,502,496	-				-0.7
1,502,496	-				+0.4
1,502,496	-				+0.4
1,502,496	-				-0.3
1,502,496	-				-0.3
1,502,499	+				+0.7
1,502,499	+				-0.4
1,502,499	+				+0.0
1,502,583	+		DZA65_RS07225	0.19	-1.7
1,502,583	+		DZA65_RS07225	0.19	+0.4
1,502,583	+		DZA65_RS07225	0.19	+0.7
1,502,583	+		DZA65_RS07225	0.19	+0.6
1,502,583	+		DZA65_RS07225	0.19	-2.5
1,502,646	+		DZA65_RS07225	0.26	-0.3
1,502,647	-		DZA65_RS07225	0.26	-1.7
1,502,680	+		DZA65_RS07225	0.29	-1.8
1,502,681	-		DZA65_RS07225	0.29	-0.1
1,502,764	+		DZA65_RS07225	0.39	-0.9
1,502,765	-				-0.9
1,502,841	+		DZA65_RS07225	0.47	-1.4
1,503,090	+		DZA65_RS07225	0.74	-0.4
1,503,090	+		DZA65_RS07225	0.74	-1.3
1,503,090	+		DZA65_RS07225	0.74	-0.1
1,503,091	-		DZA65_RS07225	0.74	-0.1
1,503,091	-		DZA65_RS07225	0.74	-1.9
1,503,124	+		DZA65_RS07225	0.78	+0.9
1,503,124	+		DZA65_RS07225	0.78	+0.1
1,503,124	+		DZA65_RS07225	0.78	+0.4
1,503,125	-		DZA65_RS07225	0.78	-1.9
1,503,125	-		DZA65_RS07225	0.78	-0.1
1,503,175	+		DZA65_RS07225	0.84	+2.0
1,503,175	+		DZA65_RS07225	0.84	-0.4
1,503,254	-				-0.5
1,503,301	+				-0.1
1,503,301	+				-1.8
1,503,301	+				-0.8
1,503,301	+				-1.4
1,503,301	+				-0.1
1,503,301	+				-2.1
1,503,301	+				-0.9
1,503,302	-				-1.8
1,503,302	-				-1.4
1,503,302	-				+0.4
1,503,302	-				-1.0
1,503,302	-				-0.6
1,503,302	-				-0.6
1,503,302	-				+0.9
1,503,302	-				-1.3
1,503,302	-				+0.1
1,503,302	-				-0.6
1,503,302	-				+1.4
1,503,310	+				-0.7
1,503,310	+				-0.9
1,503,310	+				+2.4
1,503,310	+				+0.1
1,503,311	-				+0.4
1,503,311	-				-0.9
1,503,311	-				+0.7
1,503,319	+				-0.7
1,503,319	+				+2.0
1,503,319	+				-0.9
1,503,320	-				-0.9
1,503,320	-				+0.4
1,503,320	-				+0.2
1,503,348	+				+0.1
1,503,349	-				-0.4
1,503,382	+				-1.1
1,503,382	+				+0.8
1,503,382	+				-0.6
1,503,382	+				-1.7
1,503,382	+				-2.1
1,503,382	+				+1.4
1,503,383	-				+0.9
1,503,383	-				-1.3
1,503,383	-				-0.6
1,503,383	-				-0.9
1,503,383	-				-0.1
1,503,383	-				+0.4
1,503,383	-				-1.1
1,503,383	-				-1.1
1,503,386	+				-0.9
1,503,386	+				-0.7
1,503,386	+				-0.6
1,503,386	+				-1.8
1,503,387	-				-1.7
1,503,387	-				+0.6
1,503,396	-				-0.7
1,503,405	+				-0.9
1,503,405	+				-1.4
1,503,405	+				+0.2
1,503,405	+				-0.6
1,503,405	+				-0.1
1,503,406	-				-1.6
1,503,406	-				-0.8
1,503,406	-				+0.4
1,503,406	-				+1.9
1,503,406	-				-0.1
1,503,451	+				+0.9
1,503,451	+				+1.0
1,503,451	+				-0.9
1,503,451	+				-0.7
1,503,452	-				-1.3
1,503,452	-				+1.4
1,503,468	-				-0.7
1,503,468	-				-0.4
1,503,468	-				-0.1
1,503,471	-				+0.6
1,503,471	-				-0.4
1,503,471	-				+0.1
1,503,471	-				+0.7
1,503,471	-				+1.0
1,503,471	-				-0.6
1,503,484	+				+0.1
1,503,484	+				-1.1
1,503,485	-				-1.7
1,503,485	-				-1.7
1,503,485	-				-0.7
1,503,485	-				-0.7
1,503,485	-				+0.8
1,503,500	-				-0.7
1,503,510	+				-0.9
1,503,510	+				-1.1
1,503,511	-				-0.6
1,503,512	+				+0.0
1,503,513	-				+1.4
1,503,513	-				-1.0
1,503,529	+				+1.0
1,503,529	+				-0.5
1,503,529	+				-0.6
1,503,529	+				-0.8
1,503,529	+				+0.1
1,503,530	-				+3.0
1,503,530	-				-1.5
1,503,530	-				+1.0
1,503,530	-				+1.0
1,503,530	-				+1.2
1,503,530	-				-0.6
1,503,530	-				+0.0
1,503,530	-				-0.9
1,503,530	-				-1.9
1,503,542	-				-0.3
1,503,542	-				-0.9
1,503,542	-				-1.3
1,503,542	-				-0.9
1,503,552	+				-1.8
1,503,552	+				-2.0
1,503,552	+				+0.4
1,503,553	-				+1.0
1,503,624	+				+0.9
1,503,625	-				-0.1
1,503,625	-				-0.1
1,503,651	+				+1.8
1,503,651	+				-0.5
1,503,652	-				-0.0
1,503,652	-				-0.6
1,503,662	+				+0.4
1,503,662	+				-0.6
1,503,662	+				-1.0
1,503,662	+				-2.0
1,503,662	+				+0.6
1,503,662	+				+1.9
1,503,663	-				+2.4
1,503,663	-				-0.6
1,503,663	-				-1.0
1,503,716	+		DZA65_RS07230	0.19	-0.6
1,503,716	+		DZA65_RS07230	0.19	-0.9
1,503,716	+		DZA65_RS07230	0.19	-0.0
1,503,717	-		DZA65_RS07230	0.20	-0.6
1,503,742	+		DZA65_RS07230	0.30	-0.1
1,503,743	-		DZA65_RS07230	0.31	+0.4
1,503,804	+		DZA65_RS07230	0.57	+4.2
1,503,804	+		DZA65_RS07230	0.57	-0.6
1,503,804	+		DZA65_RS07230	0.57	+1.2
1,503,805	-		DZA65_RS07230	0.57	-0.4
1,503,805	-		DZA65_RS07230	0.57	-0.2
1,503,808	+		DZA65_RS07230	0.58	+0.1
1,503,808	+		DZA65_RS07230	0.58	+0.2
1,503,808	+		DZA65_RS07230	0.58	+0.7
1,503,928	+				-0.6
1,503,928	+				+0.1
1,503,928	+				-1.7
1,503,928	+				-0.9
1,503,928	+				-0.2
1,503,928	+				+0.4
1,503,929	-				-1.4
1,503,929	-				-0.4
1,503,929	-				-0.1
1,503,929	-				+0.2
1,503,929	-				-1.4
1,503,929	-				-1.5
1,503,957	+				-1.1
1,503,957	+				+0.4
1,504,147	+		DZA65_RS07235	0.22	+0.6
1,504,148	-		DZA65_RS07235	0.23	+0.4
1,504,148	-		DZA65_RS07235	0.23	-2.0
1,504,148	-		DZA65_RS07235	0.23	-0.1
1,504,222	+		DZA65_RS07235	0.31	-1.5
1,504,223	-		DZA65_RS07235	0.31	-0.9