Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07030

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,454,695	+				-0.3
1,454,696	-				-0.6
1,454,696	-				-0.9
1,454,696	-				-1.0
1,454,696	-				-0.1
1,454,838	+		DZA65_RS07025	0.27	-1.4
1,454,839	-		DZA65_RS07025	0.27	-1.6
1,454,839	-		DZA65_RS07025	0.27	+2.3
1,455,085	-		DZA65_RS07025	0.57	-0.6
1,455,095	+		DZA65_RS07025	0.59	+0.4
1,455,095	+		DZA65_RS07025	0.59	-1.1
1,455,095	+		DZA65_RS07025	0.59	+3.3
1,455,096	-		DZA65_RS07025	0.59	-0.6
1,455,096	-		DZA65_RS07025	0.59	+0.6
1,455,096	-		DZA65_RS07025	0.59	-0.1
1,455,096	-		DZA65_RS07025	0.59	-0.7
1,455,116	+		DZA65_RS07025	0.61	+0.9
1,455,116	+		DZA65_RS07025	0.61	-0.0
1,455,117	-		DZA65_RS07025	0.61	-0.1
1,455,117	-		DZA65_RS07025	0.61	+0.4
1,455,215	+		DZA65_RS07025	0.73	-1.5
1,455,221	+		DZA65_RS07025	0.74	-1.0
1,455,221	+		DZA65_RS07025	0.74	-1.6
1,455,222	-		DZA65_RS07025	0.74	+0.1
1,455,227	+		DZA65_RS07025	0.75	-1.1
1,455,227	+		DZA65_RS07025	0.75	-0.7
1,455,227	+		DZA65_RS07025	0.75	+0.7
1,455,227	+		DZA65_RS07025	0.75	+0.4
1,455,227	+		DZA65_RS07025	0.75	-1.1
1,455,227	+		DZA65_RS07025	0.75	+0.1
1,455,227	+		DZA65_RS07025	0.75	-0.7
1,455,228	-		DZA65_RS07025	0.75	+1.0
1,455,228	-		DZA65_RS07025	0.75	+2.0
1,455,256	-		DZA65_RS07025	0.78	-0.4
1,455,428	+				-1.5
1,455,428	+				-0.7
1,455,429	-				+1.4
1,455,438	+				-2.6
1,455,439	-				-0.1
1,455,439	-				+0.9
1,455,439	-				-0.5
1,455,477	+				-0.4
1,455,477	+				-0.9
1,455,477	+				-1.2
1,455,478	-				+0.1
1,455,478	-				+1.3
1,455,614	-				-1.7
1,455,675	+				-0.0
1,455,675	+				-0.6
1,455,675	+				-0.9
1,455,675	+				-0.7
1,455,676	-				+1.1
1,455,676	-				-0.9
1,455,676	-				-1.1
1,455,676	-				+0.4
1,455,677	+				+0.2
1,455,677	+				+0.4
1,455,678	-				+3.0
1,455,745	+				-1.6
1,455,746	-				-0.7
1,455,810	+		DZA65_RS07030	0.15	-1.6
1,455,810	+		DZA65_RS07030	0.15	-0.6
1,455,810	+		DZA65_RS07030	0.15	-0.7
1,455,811	-		DZA65_RS07030	0.15	+0.1
1,455,957	+		DZA65_RS07030	0.30	-0.6
1,455,957	+		DZA65_RS07030	0.30	-1.1
1,456,006	+		DZA65_RS07030	0.35	-0.0
1,456,007	-		DZA65_RS07030	0.35	-1.1
1,456,027	+		DZA65_RS07030	0.37	-0.3
1,456,119	+		DZA65_RS07030	0.46	-1.1
1,456,119	+		DZA65_RS07030	0.46	+0.1
1,456,119	+		DZA65_RS07030	0.46	+1.4
1,456,119	+		DZA65_RS07030	0.46	-1.1
1,456,119	+		DZA65_RS07030	0.46	-0.1
1,456,119	+				-0.1
1,456,120	-		DZA65_RS07030	0.46	-0.5
1,456,120	-		DZA65_RS07030	0.46	-1.4
1,456,120	-		DZA65_RS07030	0.46	-1.5
1,456,120	-		DZA65_RS07030	0.46	-0.1
1,456,206	+		DZA65_RS07030	0.55	-1.4
1,456,230	+		DZA65_RS07030	0.57	-0.1
1,456,230	+		DZA65_RS07030	0.57	+0.4
1,456,230	+		DZA65_RS07030	0.57	-0.4
1,456,231	-		DZA65_RS07030	0.57	+1.4
1,456,338	-		DZA65_RS07030	0.68	-1.1
1,456,386	+		DZA65_RS07030	0.73	-2.3
1,456,386	+		DZA65_RS07030	0.73	-1.4
1,456,387	-		DZA65_RS07030	0.73	+0.9
1,456,387	-		DZA65_RS07030	0.73	-1.3
1,456,387	-		DZA65_RS07030	0.73	-0.9
1,456,388	+		DZA65_RS07030	0.73	+0.7
1,456,389	-		DZA65_RS07030	0.73	+0.1
1,456,560	+				+0.4
1,456,561	-				-2.3
1,456,671	+				+0.4
1,456,671	+				-2.6
1,456,671	+				-1.4
1,456,671	+				-1.5
1,456,671	+				+0.9
1,456,671	+				-0.0
1,456,671	+				+1.9
1,456,671	+				-0.3
1,456,671	+				+0.1
1,456,672	-				-1.1
1,456,672	-				-1.1
1,456,672	-				-0.9
1,456,672	-				-0.9
1,456,769	+				-0.1
1,456,769	+				+0.2
1,456,770	-				-0.2
1,456,770	-				+2.4
1,456,781	+				-0.8
1,456,781	+				-0.8
1,456,781	+				+1.0
1,456,781	+				+1.1
1,456,781	+				+1.7
1,456,781	+				+2.0
1,456,782	-				-0.3
1,456,782	-				+0.4
1,456,782	-				+2.4
1,456,782	-				+1.9
1,456,782	-				+0.4
1,456,782	-				+1.4
1,456,782	-				+0.4
1,456,782	-				-0.6
1,456,785	+				-0.9
1,456,785	+				-1.3
1,456,785	+				-0.6
1,456,785	+				+0.1
1,456,786	-				-0.9
1,456,786	-				-2.1
1,456,786	-				+1.5
1,456,786	-				-0.6
1,456,786	-				-1.6
1,456,786	-				+0.9
1,456,786	-				+1.8
1,456,786	-				+0.9
1,456,788	+				-0.9
1,456,788	+				-2.5
1,456,789	-				-1.4
1,456,825	+				-0.9
1,456,922	+		DZA65_RS07035	0.15	-1.1
1,456,923	-		DZA65_RS07035	0.15	+1.0
1,456,923	-		DZA65_RS07035	0.15	-0.6
1,456,946	+		DZA65_RS07035	0.17	-0.9
1,456,947	-		DZA65_RS07035	0.17	-1.6
1,456,947	-		DZA65_RS07035	0.17	-1.0
1,456,971	+		DZA65_RS07035	0.19	-2.0
1,456,972	-		DZA65_RS07035	0.19	-2.3
1,456,972	-		DZA65_RS07035	0.19	-1.7
1,457,036	+		DZA65_RS07035	0.24	+1.3
1,457,036	+		DZA65_RS07035	0.24	-0.4
1,457,037	-		DZA65_RS07035	0.24	-0.2
1,457,037	-		DZA65_RS07035	0.24	-0.8
1,457,346	-		DZA65_RS07035	0.49	-0.4
1,457,430	+		DZA65_RS07035	0.56	-0.1
1,457,498	+		DZA65_RS07035	0.61	-1.6
1,457,498	+		DZA65_RS07035	0.61	-1.1
1,457,498	+		DZA65_RS07035	0.61	+2.0
1,457,499	-		DZA65_RS07035	0.61	+2.8
1,457,519	+		DZA65_RS07035	0.63	-0.7
1,457,519	+		DZA65_RS07035	0.63	+1.0
1,457,519	+		DZA65_RS07035	0.63	-0.7
1,457,519	+		DZA65_RS07035	0.63	-1.1
1,457,554	+		DZA65_RS07035	0.66	-0.5
1,457,592	+		DZA65_RS07035	0.69	+2.4
1,457,592	+		DZA65_RS07035	0.69	-0.4
1,457,592	+		DZA65_RS07035	0.69	+1.6
1,457,592	+		DZA65_RS07035	0.69	-0.9