Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06985

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,445,974	+		DZA65_RS06980	0.30	-0.7
1,445,975	-		DZA65_RS06980	0.30	-1.1
1,445,975	-				-0.9
1,446,104	-		DZA65_RS06980	0.42	-1.5
1,446,108	+		DZA65_RS06980	0.42	+1.0
1,446,108	+		DZA65_RS06980	0.42	-1.2
1,446,108	+		DZA65_RS06980	0.42	-0.1
1,446,108	+		DZA65_RS06980	0.42	+1.5
1,446,108	+		DZA65_RS06980	0.42	+0.5
1,446,108	+		DZA65_RS06980	0.42	-1.1
1,446,109	-		DZA65_RS06980	0.42	-1.9
1,446,109	-		DZA65_RS06980	0.42	-1.8
1,446,109	-		DZA65_RS06980	0.42	+0.0
1,446,109	-		DZA65_RS06980	0.42	+0.7
1,446,109	-		DZA65_RS06980	0.42	-1.5
1,446,109	-		DZA65_RS06980	0.42	-1.1
1,446,109	-		DZA65_RS06980	0.42	-1.7
1,446,109	-		DZA65_RS06980	0.42	-1.0
1,446,109	-		DZA65_RS06980	0.42	+0.5
1,446,109	-		DZA65_RS06980	0.42	+0.5
1,446,109	-		DZA65_RS06980	0.42	-1.9
1,446,119	+		DZA65_RS06980	0.43	-0.8
1,446,119	+		DZA65_RS06980	0.43	-1.1
1,446,271	+		DZA65_RS06980	0.56	+0.1
1,446,271	+		DZA65_RS06980	0.56	+0.1
1,446,272	-		DZA65_RS06980	0.56	-0.8
1,446,342	+		DZA65_RS06980	0.62	-0.8
1,446,488	+		DZA65_RS06980	0.75	-0.3
1,446,488	+		DZA65_RS06980	0.75	-0.3
1,446,489	-		DZA65_RS06980	0.75	+0.0
1,446,489	-		DZA65_RS06980	0.75	-3.0
1,446,492	+		DZA65_RS06980	0.75	+1.1
1,446,492	+		DZA65_RS06980	0.75	-1.5
1,446,492	+		DZA65_RS06980	0.75	-0.6
1,446,493	-		DZA65_RS06980	0.75	+0.5
1,446,493	-		DZA65_RS06980	0.75	-0.3
1,446,493	-		DZA65_RS06980	0.75	-0.1
1,446,493	-		DZA65_RS06980	0.75	+1.5
1,446,493	-		DZA65_RS06980	0.75	+1.5
1,446,493	-		DZA65_RS06980	0.75	-0.6
1,446,493	-		DZA65_RS06980	0.75	-2.1
1,446,565	-		DZA65_RS06980	0.82	-1.1
1,446,565	-		DZA65_RS06980	0.82	-0.5
1,446,628	-		DZA65_RS06980	0.87	-0.1
1,446,628	-		DZA65_RS06980	0.87	-2.8
1,446,628	-		DZA65_RS06980	0.87	+0.5
1,446,628	-		DZA65_RS06980	0.87	-1.0
1,446,628	-		DZA65_RS06980	0.87	+0.5
1,446,628	-		DZA65_RS06980	0.87	+0.5
1,446,628	-		DZA65_RS06980	0.87	-0.5
1,446,628	-		DZA65_RS06980	0.87	-0.3
1,446,628	-		DZA65_RS06980	0.87	-0.3
1,446,663	+				-1.1
1,446,663	+				-0.7
1,446,663	+				-0.1
1,446,664	-				-0.4
1,446,664	-				-0.4
1,446,797	+				-0.5
1,446,805	-				-0.3
1,446,993	+		DZA65_RS06985	0.21	-2.4
1,446,994	-		DZA65_RS06985	0.21	-0.1
1,446,994	-		DZA65_RS06985	0.21	+0.5
1,446,994	-		DZA65_RS06985	0.21	-0.5
1,446,998	+		DZA65_RS06985	0.21	-0.9
1,446,998	+		DZA65_RS06985	0.21	+0.4
1,447,183	+		DZA65_RS06985	0.39	+2.5
1,447,183	+		DZA65_RS06985	0.39	-0.1
1,447,184	-		DZA65_RS06985	0.39	-0.1
1,447,184	-		DZA65_RS06985	0.39	+1.5
1,447,223	+		DZA65_RS06985	0.43	+0.5
1,447,224	-		DZA65_RS06985	0.43	-1.3
1,447,224	-		DZA65_RS06985	0.43	-1.9
1,447,259	+		DZA65_RS06985	0.46	-0.6
1,447,259	+		DZA65_RS06985	0.46	+1.5
1,447,259	+		DZA65_RS06985	0.46	+1.5
1,447,259	+		DZA65_RS06985	0.46	-1.9
1,447,260	-		DZA65_RS06985	0.46	-0.3
1,447,260	-		DZA65_RS06985	0.46	+0.2
1,447,619	+		DZA65_RS06985	0.80	+1.3
1,447,705	+		DZA65_RS06985	0.89	-2.0
1,447,706	-		DZA65_RS06985	0.89	+0.5
1,447,706	-		DZA65_RS06985	0.89	+2.3
1,447,785	-				-0.5
1,447,818	-				-1.2
1,447,818	-				-0.4
1,447,824	+				-1.2
1,447,824	+				+0.7
1,447,824	+				+0.2
1,447,824	+				+0.5
1,447,824	+				+0.5
1,447,825	-				-0.5
1,447,825	-				-0.1
1,447,829	+				-1.1
1,447,829	+				-1.3
1,447,829	+				-1.3
1,447,829	+				-1.0
1,447,829	+				+0.0
1,447,829	+				-1.0
1,447,830	-				-0.1
1,447,830	-				+0.9
1,447,830	-				-0.9
1,447,830	-				+5.7
1,447,830	-				-0.1
1,447,834	+				+1.1
1,447,834	+				-0.1
1,447,834	+				-0.1
1,447,834	+				+1.5
1,447,835	-				+0.5
1,447,835	-				-0.2
1,447,835	-				-0.1
1,447,835	-				-1.5
1,447,835	-				-2.5
1,447,835	-				-0.5
1,447,835	-				-0.1
1,447,835	-				-0.5
1,447,835	-				+1.3
1,447,835	-				-1.3
1,447,835	-				-0.5
1,448,025	-		DZA65_RS06990	0.12	-1.3
1,448,064	-		DZA65_RS06990	0.16	-1.1
1,448,113	+		DZA65_RS06990	0.21	+0.7
1,448,113	+		DZA65_RS06990	0.21	-0.5
1,448,114	-		DZA65_RS06990	0.21	-1.1
1,448,114	-		DZA65_RS06990	0.21	-0.1
1,448,114	-		DZA65_RS06990	0.21	-1.8
1,448,114	-		DZA65_RS06990	0.21	-1.7
1,448,114	-		DZA65_RS06990	0.21	-0.1
1,448,114	-		DZA65_RS06990	0.21	-0.1
1,448,114	-		DZA65_RS06990	0.21	-1.1
1,448,114	-		DZA65_RS06990	0.21	-1.8
1,448,118	+		DZA65_RS06990	0.21	+1.1
1,448,118	+		DZA65_RS06990	0.21	-0.1
1,448,118	+		DZA65_RS06990	0.21	+4.9
1,448,119	-		DZA65_RS06990	0.21	-0.7
1,448,119	-		DZA65_RS06990	0.21	-2.6
1,448,119	-		DZA65_RS06990	0.21	-3.8
1,448,119	-		DZA65_RS06990	0.21	+0.1
1,448,119	-		DZA65_RS06990	0.21	-1.2
1,448,120	+		DZA65_RS06990	0.21	+0.5
1,448,121	-		DZA65_RS06990	0.21	-1.3
1,448,121	-		DZA65_RS06990	0.21	-0.1
1,448,143	-		DZA65_RS06990	0.24	-2.2
1,448,144	+		DZA65_RS06990	0.24	-0.9
1,448,144	+		DZA65_RS06990	0.24	+0.1
1,448,144	+		DZA65_RS06990	0.24	-0.5
1,448,144	+		DZA65_RS06990	0.24	-0.5
1,448,144	+		DZA65_RS06990	0.24	-0.8
1,448,144	+		DZA65_RS06990	0.24	-0.1
1,448,144	+		DZA65_RS06990	0.24	-2.2
1,448,144	+		DZA65_RS06990	0.24	+0.1
1,448,144	+		DZA65_RS06990	0.24	+0.7
1,448,144	+		DZA65_RS06990	0.24	+1.5
1,448,144	+		DZA65_RS06990	0.24	-0.3
1,448,144	+		DZA65_RS06990	0.24	-0.1
1,448,144	+		DZA65_RS06990	0.24	-2.1
1,448,144	+		DZA65_RS06990	0.24	+0.7
1,448,144	+		DZA65_RS06990	0.24	-1.0
1,448,144	+		DZA65_RS06990	0.24	-0.1
1,448,144	+		DZA65_RS06990	0.24	-1.1
1,448,144	+		DZA65_RS06990	0.24	-1.7
1,448,144	+		DZA65_RS06990	0.24	-1.0
1,448,144	+		DZA65_RS06990	0.24	+0.9
1,448,144	+		DZA65_RS06990	0.24	-1.0
1,448,145	-		DZA65_RS06990	0.24	-1.5
1,448,145	-		DZA65_RS06990	0.24	-1.2
1,448,145	-				+0.5
1,448,145	-		DZA65_RS06990	0.24	-1.1
1,448,145	-		DZA65_RS06990	0.24	-1.3
1,448,145	-		DZA65_RS06990	0.24	+0.7
1,448,145	-		DZA65_RS06990	0.24	-0.7
1,448,145	-		DZA65_RS06990	0.24	-2.3
1,448,145	-		DZA65_RS06990	0.24	-1.0
1,448,145	-		DZA65_RS06990	0.24	+0.6
1,448,145	-		DZA65_RS06990	0.24	-1.1
1,448,145	-		DZA65_RS06990	0.24	-0.4
1,448,145	-		DZA65_RS06990	0.24	-1.3
1,448,152	+		DZA65_RS06990	0.24	-1.0
1,448,153	-		DZA65_RS06990	0.25	-0.9
1,448,175	+		DZA65_RS06990	0.27	+0.9
1,448,220	+		DZA65_RS06990	0.31	-0.1
1,448,221	-		DZA65_RS06990	0.31	-1.3
1,448,222	+		DZA65_RS06990	0.31	+0.5
1,448,222	+		DZA65_RS06990	0.31	+0.5
1,448,222	+		DZA65_RS06990	0.31	-2.7
1,448,222	+		DZA65_RS06990	0.31	-0.1
1,448,222	+		DZA65_RS06990	0.31	-1.5
1,448,222	+		DZA65_RS06990	0.31	-1.4
1,448,222	+		DZA65_RS06990	0.31	+0.5
1,448,223	-		DZA65_RS06990	0.31	-2.4
1,448,223	-		DZA65_RS06990	0.31	-1.1
1,448,223	-		DZA65_RS06990	0.31	-1.3
1,448,223	-		DZA65_RS06990	0.31	-0.1
1,448,223	-		DZA65_RS06990	0.31	+0.1
1,448,223	-		DZA65_RS06990	0.31	-1.2
1,448,223	-		DZA65_RS06990	0.31	-0.1
1,448,255	+		DZA65_RS06990	0.35	-2.1
1,448,256	-		DZA65_RS06990	0.35	-0.5
1,448,312	+		DZA65_RS06990	0.40	-1.1
1,448,313	-		DZA65_RS06990	0.40	-0.1
1,448,313	-		DZA65_RS06990	0.40	-1.1
1,448,452	+		DZA65_RS06990	0.54	+1.0
1,448,452	+		DZA65_RS06990	0.54	-0.5
1,448,452	+		DZA65_RS06990	0.54	+1.7
1,448,452	+		DZA65_RS06990	0.54	-0.5
1,448,452	+		DZA65_RS06990	0.54	-0.5
1,448,453	-		DZA65_RS06990	0.54	-1.9
1,448,537	+		DZA65_RS06990	0.62	-0.3
1,448,537	+		DZA65_RS06990	0.62	-3.1
1,448,537	+		DZA65_RS06990	0.62	-1.0
1,448,537	+		DZA65_RS06990	0.62	-0.5
1,448,537	+		DZA65_RS06990	0.62	-1.5
1,448,538	-		DZA65_RS06990	0.62	-2.3
1,448,538	-		DZA65_RS06990	0.62	-1.5
1,448,538	-		DZA65_RS06990	0.62	+0.5
1,448,538	-		DZA65_RS06990	0.62	+0.6
1,448,538	-		DZA65_RS06990	0.62	-0.5
1,448,538	-		DZA65_RS06990	0.62	+0.5
1,448,615	+		DZA65_RS06990	0.70	+3.0
1,448,615	+		DZA65_RS06990	0.70	-0.5
1,448,615	+		DZA65_RS06990	0.70	+0.9
1,448,615	+		DZA65_RS06990	0.70	-0.1
1,448,616	-		DZA65_RS06990	0.70	-0.5
1,448,616	-		DZA65_RS06990	0.70	-3.0
1,448,616	-		DZA65_RS06990	0.70	-0.1
1,448,616	-		DZA65_RS06990	0.70	-1.5
1,448,630	+		DZA65_RS06990	0.71	-0.9
1,448,631	-		DZA65_RS06990	0.72	-0.9
1,448,633	+		DZA65_RS06990	0.72	-1.3
1,448,633	+		DZA65_RS06990	0.72	-0.9
1,448,633	+		DZA65_RS06990	0.72	-0.2
1,448,633	+		DZA65_RS06990	0.72	-0.9
1,448,633	+		DZA65_RS06990	0.72	-1.2
1,448,633	+		DZA65_RS06990	0.72	-0.7
1,448,633	+		DZA65_RS06990	0.72	+0.9
1,448,634	-		DZA65_RS06990	0.72	-1.5
1,448,671	-		DZA65_RS06990	0.76	-2.1
1,448,671	-		DZA65_RS06990	0.76	-2.5
1,448,718	+		DZA65_RS06990	0.80	+1.0
1,448,756	+		DZA65_RS06990	0.84	+0.9
1,448,756	+		DZA65_RS06990	0.84	+0.2
1,448,757	-		DZA65_RS06990	0.84	-2.2
1,448,757	-		DZA65_RS06990	0.84	-2.4
1,448,757	-		DZA65_RS06990	0.84	-0.1
1,448,757	-				+0.2
1,448,757	-		DZA65_RS06990	0.84	-0.9
1,448,757	-		DZA65_RS06990	0.84	-1.5
1,448,757	-		DZA65_RS06990	0.84	-0.6