Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04265 and DZA65_RS04270 are separated by 57 nucleotides DZA65_RS04270 and DZA65_RS04275 overlap by 4 nucleotides DZA65_RS04275 and DZA65_RS04280 are separated by 213 nucleotides
DZA65_RS04265: DZA65_RS04265 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 889,239 to 891,518
_RS04265
DZA65_RS04270: DZA65_RS04270 - YaiI/YqxD family protein, at 891,576 to 892,025
_RS04270
DZA65_RS04275: DZA65_RS04275 - oxygen-dependent coproporphyrinogen oxidase, at 892,022 to 892,960
_RS04275
DZA65_RS04280: DZA65_RS04280 - GNAT family acetyltransferase, at 893,174 to 893,599
_RS04280
Position (kb) 892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.270 kb on - strand, within DZA65_RS04265 at 891.317 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.430 kb on + strand at 891.430 kb on + strand at 891.516 kb on + strand at 891.516 kb on + strand at 891.560 kb on + strand at 891.560 kb on + strand at 891.561 kb on - strand at 891.639 kb on + strand, within DZA65_RS04270 at 891.639 kb on + strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.663 kb on + strand, within DZA65_RS04270 at 891.683 kb on + strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.722 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand at 891.911 kb on + strand, within DZA65_RS04270 at 891.911 kb on + strand, within DZA65_RS04270 at 892.045 kb on + strand at 892.232 kb on + strand, within DZA65_RS04275 at 892.861 kb on + strand, within DZA65_RS04275 at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.998 kb on + strand at 892.998 kb on + strand at 893.011 kb on + strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.025 kb on + strand at 893.026 kb on - strand at 893.097 kb on + strand at 893.097 kb on + strand at 893.098 kb on - strand at 893.098 kb on - strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.187 kb on + strand at 893.187 kb on + strand at 893.287 kb on + strand, within DZA65_RS04280 at 893.287 kb on + strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.381 kb on + strand, within DZA65_RS04280 at 893.382 kb on - strand, within DZA65_RS04280 at 893.382 kb on - strand at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.594 kb on + strand at 893.657 kb on - strand at 893.657 kb on - strand at 893.752 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.849 kb on + strand at 893.850 kb on - strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.958 kb on + strand at 893.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 891,033 + DZA65_RS04265 0.79 -1.6 891,033 + DZA65_RS04265 0.79 +1.6 891,033 + DZA65_RS04265 0.79 -2.9 891,033 + DZA65_RS04265 0.79 +1.2 891,033 + DZA65_RS04265 0.79 -0.5 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 +0.6 891,033 + DZA65_RS04265 0.79 -1.0 891,033 + DZA65_RS04265 0.79 -1.4 891,033 + DZA65_RS04265 0.79 -1.5 891,033 + DZA65_RS04265 0.79 +0.4 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 +0.6 891,033 + DZA65_RS04265 0.79 -0.7 891,034 - DZA65_RS04265 0.79 +1.6 891,034 - DZA65_RS04265 0.79 -1.0 891,034 - DZA65_RS04265 0.79 +0.0 891,034 - DZA65_RS04265 0.79 -0.9 891,034 - DZA65_RS04265 0.79 -1.7 891,034 - DZA65_RS04265 0.79 -0.4 891,034 - DZA65_RS04265 0.79 -2.3 891,034 - DZA65_RS04265 0.79 -1.4 891,034 - DZA65_RS04265 0.79 -0.8 891,034 - DZA65_RS04265 0.79 -0.1 891,034 - DZA65_RS04265 0.79 +1.6 891,034 - DZA65_RS04265 0.79 +0.6 891,270 - DZA65_RS04265 0.89 -1.6 891,317 + +0.3 891,357 + +2.4 891,357 + +0.0 891,357 + -0.7 891,357 + +1.6 891,357 + +0.2 891,357 + +1.6 891,358 - +4.5 891,358 - -1.0 891,358 - +1.4 891,358 - -0.1 891,430 + +0.0 891,430 + -0.4 891,516 + -0.7 891,516 + -0.6 891,560 + -0.4 891,560 + +0.0 891,561 - -0.8 891,639 + DZA65_RS04270 0.14 +1.2 891,639 + DZA65_RS04270 0.14 +0.6 891,640 - DZA65_RS04270 0.14 -1.4 891,640 - DZA65_RS04270 0.14 +0.6 891,640 - DZA65_RS04270 0.14 -2.1 891,663 + DZA65_RS04270 0.19 -0.9 891,683 + DZA65_RS04270 0.24 -1.5 891,684 - DZA65_RS04270 0.24 -0.5 891,684 - DZA65_RS04270 0.24 -1.3 891,684 - DZA65_RS04270 0.24 -1.5 891,722 + DZA65_RS04270 0.32 -2.4 891,733 + DZA65_RS04270 0.35 +0.0 891,733 + DZA65_RS04270 0.35 +1.4 891,733 + DZA65_RS04270 0.35 +0.0 891,733 + +0.8 891,911 + DZA65_RS04270 0.74 -1.1 891,911 + DZA65_RS04270 0.74 -1.4 892,045 + -0.6 892,232 + DZA65_RS04275 0.22 -0.4 892,861 + DZA65_RS04275 0.89 +0.4 892,961 - +4.6 892,961 - -0.1 892,961 - +0.0 892,961 - +1.6 892,971 - +1.6 892,971 - -0.5 892,971 - +0.3 892,998 + -0.4 892,998 + -2.1 893,011 + -1.4 893,012 - +0.3 893,012 - +0.5 893,012 - -1.0 893,012 - -1.4 893,012 - -1.7 893,014 + -0.4 893,014 + -0.1 893,014 + +1.4 893,015 - -0.8 893,015 - +1.0 893,015 - -0.6 893,015 - +0.3 893,020 + -0.7 893,020 + -0.4 893,020 + +1.1 893,020 + -0.2 893,020 + -1.3 893,020 + +1.0 893,020 + -0.2 893,020 + -1.2 893,020 + -2.1 893,020 + -1.0 893,020 + -0.3 893,020 + -1.8 893,020 + -0.9 893,020 + +3.5 893,021 - +0.0 893,021 - -0.4 893,021 - +0.8 893,021 - -0.2 893,021 - -2.2 893,023 + -0.4 893,023 + +0.0 893,023 + +0.9 893,023 + +1.0 893,023 + +0.6 893,023 + -1.0 893,024 - +1.0 893,024 - -1.1 893,024 - +0.3 893,024 - -0.1 893,024 - +0.6 893,024 - +0.6 893,024 - +1.0 893,024 - +0.4 893,024 - -0.4 893,024 - -2.8 893,025 + +0.6 893,026 - -1.4 893,097 + -2.2 893,097 + -0.1 893,098 - -0.2 893,098 - -1.6 893,108 + -1.3 893,108 + +1.0 893,109 - +1.2 893,109 - -1.0 893,109 - +0.4 893,109 - +0.9 893,158 + +0.6 893,158 + -0.7 893,158 + +1.6 893,158 + +0.3 893,158 + +0.0 893,159 - -1.2 893,159 - +1.6 893,159 - -0.4 893,159 - +1.5 893,159 - +0.6 893,159 - -0.1 893,159 - -0.4 893,159 - -2.1 893,159 - -1.0 893,159 - -1.4 893,159 - +1.0 893,187 + +1.6 893,187 + -0.7 893,287 + DZA65_RS04280 0.27 -0.7 893,287 + DZA65_RS04280 0.27 -0.7 893,288 - DZA65_RS04280 0.27 +0.3 893,288 - DZA65_RS04280 0.27 -0.7 893,381 + DZA65_RS04280 0.49 +0.1 893,382 - DZA65_RS04280 0.49 -1.4 893,382 - -0.4 893,384 + DZA65_RS04280 0.49 +0.8 893,384 + DZA65_RS04280 0.49 -2.4 893,384 + DZA65_RS04280 0.49 -0.8 893,384 + DZA65_RS04280 0.49 +0.3 893,384 + DZA65_RS04280 0.49 -0.2 893,385 - DZA65_RS04280 0.50 -0.2 893,385 - DZA65_RS04280 0.50 -1.2 893,385 - DZA65_RS04280 0.50 +1.1 893,385 - DZA65_RS04280 0.50 -1.0 893,385 - DZA65_RS04280 0.50 -1.8 893,525 + DZA65_RS04280 0.82 -1.3 893,525 + DZA65_RS04280 0.82 -1.2 893,525 + DZA65_RS04280 0.82 -3.1 893,526 - DZA65_RS04280 0.83 -1.4 893,526 - DZA65_RS04280 0.83 -1.1 893,526 - DZA65_RS04280 0.83 +0.0 893,526 - DZA65_RS04280 0.83 -0.5 893,526 - DZA65_RS04280 0.83 -1.4 893,526 - DZA65_RS04280 0.83 +0.9 893,526 - DZA65_RS04280 0.83 -1.8 893,540 + DZA65_RS04280 0.86 -1.3 893,540 + DZA65_RS04280 0.86 -0.8 893,540 + DZA65_RS04280 0.86 +0.6 893,540 + -1.0 893,540 + DZA65_RS04280 0.86 +0.6 893,540 + DZA65_RS04280 0.86 -0.7 893,594 + +0.5 893,657 - -0.2 893,657 - -0.8 893,752 + -1.4 893,756 + -0.6 893,756 + -3.0 893,756 + +1.8 893,756 + +1.2 893,757 - -1.4 893,757 - -1.0 893,757 - +0.0 893,757 - +0.3 893,757 - -0.1 893,757 - +0.0 893,849 + +1.0 893,850 - -0.7 893,870 + -0.4 893,870 + +0.3 893,870 + -1.5 893,870 + -1.4 893,870 + -0.2 893,870 + -1.2 893,871 - +0.6 893,871 - +1.4 893,871 - -0.4 893,871 - +1.5 893,871 - -2.2 893,871 - -0.5 893,871 - +0.0 893,958 + +0.6 893,958 + -0.4
Or see this region's nucleotide sequence