Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03305 and DZA65_RS03310 are separated by 62 nucleotides DZA65_RS03310 and DZA65_RS03315 are separated by 89 nucleotides
DZA65_RS03305: DZA65_RS03305 - deoxyribose-phosphate aldolase, at 699,957 to 700,736
_RS03305
DZA65_RS03310: DZA65_RS03310 - thymidine phosphorylase, at 700,799 to 702,130
_RS03310
DZA65_RS03315: DZA65_RS03315 - phosphopentomutase, at 702,220 to 703,443
_RS03315
Position (kb) 700
701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 699.820 kb on + strand at 699.821 kb on - strand at 699.830 kb on + strand at 699.830 kb on + strand at 699.831 kb on - strand at 699.831 kb on - strand at 699.840 kb on + strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.848 kb on + strand at 699.848 kb on + strand at 699.862 kb on + strand at 699.871 kb on - strand at 699.871 kb on - strand at 699.890 kb on + strand at 699.890 kb on + strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.907 kb on - strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.913 kb on - strand at 699.913 kb on - strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.957 kb on - strand at 699.957 kb on - strand at 699.957 kb on - strand at 699.967 kb on + strand at 699.967 kb on + strand at 699.968 kb on - strand at 699.968 kb on - strand at 700.006 kb on + strand at 700.006 kb on + strand at 700.065 kb on - strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.101 kb on + strand, within DZA65_RS03305 at 700.242 kb on + strand, within DZA65_RS03305 at 700.242 kb on + strand, within DZA65_RS03305 at 700.243 kb on - strand, within DZA65_RS03305 at 700.556 kb on + strand, within DZA65_RS03305 at 700.599 kb on + strand, within DZA65_RS03305 at 700.619 kb on + strand, within DZA65_RS03305 at 700.620 kb on - strand, within DZA65_RS03305 at 700.774 kb on + strand at 700.774 kb on + strand at 700.774 kb on + strand at 700.781 kb on + strand at 700.781 kb on + strand at 700.781 kb on + strand at 700.782 kb on - strand at 700.820 kb on - strand at 700.948 kb on + strand, within DZA65_RS03310 at 700.948 kb on + strand, within DZA65_RS03310 at 701.121 kb on - strand, within DZA65_RS03310 at 701.300 kb on + strand, within DZA65_RS03310 at 701.300 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.408 kb on - strand, within DZA65_RS03310 at 701.428 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.486 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.786 kb on + strand, within DZA65_RS03310 at 701.786 kb on + strand, within DZA65_RS03310 at 701.787 kb on - strand, within DZA65_RS03310 at 701.791 kb on + strand, within DZA65_RS03310 at 701.791 kb on + strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.923 kb on + strand, within DZA65_RS03310 at 701.924 kb on - strand, within DZA65_RS03310 at 702.128 kb on + strand at 702.129 kb on - strand at 702.135 kb on - strand at 702.153 kb on + strand at 702.153 kb on + strand at 702.154 kb on - strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.158 kb on - strand at 702.158 kb on - strand at 702.170 kb on + strand at 702.177 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.196 kb on - strand at 702.213 kb on + strand at 702.213 kb on + strand at 702.213 kb on + strand at 702.214 kb on - strand at 702.214 kb on - strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.218 kb on - strand at 702.218 kb on - strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.238 kb on - strand at 702.238 kb on - strand at 702.307 kb on - strand at 702.307 kb on - strand at 702.462 kb on + strand, within DZA65_RS03315 at 702.462 kb on + strand, within DZA65_RS03315 at 702.475 kb on + strand, within DZA65_RS03315 at 702.724 kb on + strand, within DZA65_RS03315 at 702.725 kb on - strand, within DZA65_RS03315 at 702.790 kb on + strand, within DZA65_RS03315 at 702.791 kb on - strand, within DZA65_RS03315 at 702.835 kb on + strand, within DZA65_RS03315 at 703.006 kb on - strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.104 kb on + strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 699,820 + -1.5 699,821 - +0.3 699,830 + -1.5 699,830 + -1.1 699,831 - -0.5 699,831 - +0.7 699,840 + -1.9 699,841 - -0.4 699,841 - -0.2 699,841 - -0.9 699,841 - -0.5 699,841 - -0.9 699,848 + -0.6 699,848 + +1.6 699,862 + -0.9 699,871 - +0.1 699,871 - +0.4 699,890 + +0.4 699,890 + +0.1 699,891 - -0.2 699,891 - +1.7 699,891 - -0.1 699,891 - +0.3 699,906 + -0.9 699,906 + +0.1 699,906 + +1.3 699,906 + -1.0 699,907 - -0.8 699,912 + +0.1 699,912 + -0.3 699,912 + +0.1 699,912 + +0.1 699,913 - -1.8 699,913 - +5.1 699,956 + -2.4 699,956 + -1.1 699,956 + +2.3 699,956 + -0.7 699,956 + +1.7 699,957 - +0.1 699,957 - -1.5 699,957 - +1.1 699,967 + +0.1 699,967 + -0.8 699,968 - -0.9 699,968 - -0.7 700,006 + +0.7 700,006 + -0.7 700,065 - DZA65_RS03305 0.14 +0.7 700,097 + DZA65_RS03305 0.18 -1.1 700,097 + DZA65_RS03305 0.18 -0.3 700,097 + DZA65_RS03305 0.18 -0.9 700,098 - DZA65_RS03305 0.18 -0.4 700,098 - DZA65_RS03305 0.18 +1.7 700,098 - DZA65_RS03305 0.18 +0.7 700,098 - DZA65_RS03305 0.18 -0.7 700,098 - DZA65_RS03305 0.18 -0.7 700,098 - DZA65_RS03305 0.18 -1.0 700,098 - DZA65_RS03305 0.18 -0.9 700,098 - DZA65_RS03305 0.18 -2.3 700,101 + DZA65_RS03305 0.18 +0.1 700,242 + DZA65_RS03305 0.37 -0.1 700,242 + DZA65_RS03305 0.37 +0.1 700,243 - DZA65_RS03305 0.37 +0.9 700,556 + DZA65_RS03305 0.77 -0.3 700,599 + DZA65_RS03305 0.82 -1.5 700,619 + DZA65_RS03305 0.85 -0.9 700,620 - DZA65_RS03305 0.85 -1.1 700,774 + -2.3 700,774 + -0.1 700,774 + -0.7 700,781 + +0.4 700,781 + +0.2 700,781 + -0.9 700,782 - +0.2 700,820 - -2.3 700,948 + DZA65_RS03310 0.11 -1.7 700,948 + DZA65_RS03310 0.11 +0.1 701,121 - DZA65_RS03310 0.24 +2.3 701,300 + DZA65_RS03310 0.38 -1.1 701,300 + DZA65_RS03310 0.38 -2.4 701,407 + DZA65_RS03310 0.46 +2.7 701,407 + DZA65_RS03310 0.46 -1.2 701,408 - DZA65_RS03310 0.46 +0.1 701,428 + DZA65_RS03310 0.47 -0.6 701,438 + DZA65_RS03310 0.48 +0.6 701,438 + DZA65_RS03310 0.48 +0.1 701,438 + DZA65_RS03310 0.48 +1.7 701,438 + DZA65_RS03310 0.48 +0.7 701,438 + DZA65_RS03310 0.48 +0.6 701,438 + DZA65_RS03310 0.48 -0.5 701,438 + DZA65_RS03310 0.48 -1.3 701,438 + DZA65_RS03310 0.48 -0.7 701,438 + DZA65_RS03310 0.48 +0.0 701,439 - DZA65_RS03310 0.48 +0.1 701,439 - DZA65_RS03310 0.48 -3.2 701,439 - DZA65_RS03310 0.48 -0.7 701,439 - DZA65_RS03310 0.48 +1.1 701,485 + DZA65_RS03310 0.52 -0.9 701,485 + DZA65_RS03310 0.52 +1.8 701,486 - DZA65_RS03310 0.52 +1.2 701,734 - DZA65_RS03310 0.70 -0.9 701,734 - DZA65_RS03310 0.70 -0.9 701,734 - DZA65_RS03310 0.70 -0.3 701,734 - DZA65_RS03310 0.70 +0.8 701,786 + DZA65_RS03310 0.74 -1.0 701,786 + DZA65_RS03310 0.74 -0.7 701,787 - DZA65_RS03310 0.74 -1.7 701,791 + DZA65_RS03310 0.74 +0.5 701,791 + DZA65_RS03310 0.74 -1.5 701,792 - DZA65_RS03310 0.75 +1.7 701,792 - DZA65_RS03310 0.75 +0.1 701,792 - DZA65_RS03310 0.75 -0.9 701,792 - DZA65_RS03310 0.75 +0.1 701,792 - DZA65_RS03310 0.75 +0.4 701,792 - DZA65_RS03310 0.75 -0.9 701,795 + DZA65_RS03310 0.75 +0.5 701,795 + DZA65_RS03310 0.75 +1.3 701,795 + DZA65_RS03310 0.75 -2.2 701,795 + DZA65_RS03310 0.75 +0.3 701,795 + DZA65_RS03310 0.75 +1.1 701,795 + DZA65_RS03310 0.75 -0.5 701,795 + DZA65_RS03310 0.75 -0.6 701,795 + DZA65_RS03310 0.75 -0.6 701,795 + DZA65_RS03310 0.75 -1.3 701,796 - DZA65_RS03310 0.75 +0.9 701,796 - DZA65_RS03310 0.75 +0.1 701,796 - DZA65_RS03310 0.75 +0.4 701,796 - DZA65_RS03310 0.75 -1.7 701,796 - DZA65_RS03310 0.75 -1.0 701,796 - DZA65_RS03310 0.75 -0.0 701,796 - DZA65_RS03310 0.75 +0.3 701,796 - DZA65_RS03310 0.75 -1.1 701,796 - DZA65_RS03310 0.75 -1.1 701,796 - DZA65_RS03310 0.75 -2.7 701,796 - DZA65_RS03310 0.75 -0.7 701,796 - DZA65_RS03310 0.75 +0.3 701,923 + DZA65_RS03310 0.84 -1.0 701,924 - DZA65_RS03310 0.84 +0.7 702,128 + -0.4 702,129 - -0.9 702,135 - +1.3 702,153 + +0.9 702,153 + -1.1 702,154 - -2.0 702,157 + -0.4 702,157 + -0.4 702,157 + -1.2 702,157 + -0.6 702,157 + -1.7 702,157 + -0.2 702,157 + +0.1 702,157 + -1.6 702,157 + -2.0 702,157 + +0.1 702,157 + -1.1 702,158 - -1.3 702,158 - -0.6 702,170 + +0.1 702,177 + -1.3 702,181 + +0.7 702,181 + -1.5 702,181 + +0.9 702,181 + -0.1 702,182 - -0.6 702,182 - -0.3 702,182 - -1.1 702,182 - +0.7 702,182 - -1.6 702,183 + -1.5 702,183 + -0.1 702,183 + -2.2 702,183 + -0.1 702,183 + -0.9 702,184 - -1.3 702,184 - -0.8 702,184 - -1.5 702,184 - -0.0 702,184 - -1.1 702,184 - -1.0 702,184 - -0.5 702,184 - +1.7 702,184 - -0.3 702,184 - +1.7 702,196 - +0.4 702,213 + -2.8 702,213 + -1.9 702,213 + -1.1 702,214 - -1.1 702,214 - +0.1 702,217 + -0.5 702,217 + -1.1 702,217 + +0.1 702,217 + +2.0 702,218 - -0.5 702,218 - -0.3 702,234 + -0.8 702,234 + -0.2 702,234 + +0.1 702,234 + -1.1 702,235 - +0.1 702,235 - -0.9 702,235 - +0.4 702,235 - -2.4 702,235 - -0.5 702,235 - +0.7 702,235 - +0.3 702,238 - +0.9 702,238 - -1.6 702,307 - -0.0 702,307 - -1.1 702,462 + DZA65_RS03315 0.20 -1.1 702,462 + DZA65_RS03315 0.20 +0.9 702,475 + DZA65_RS03315 0.21 +2.0 702,724 + DZA65_RS03315 0.41 -2.2 702,725 - DZA65_RS03315 0.41 -1.1 702,790 + DZA65_RS03315 0.47 -1.9 702,791 - DZA65_RS03315 0.47 -1.6 702,835 + DZA65_RS03315 0.50 -2.7 703,006 - DZA65_RS03315 0.64 +0.3 703,009 + DZA65_RS03315 0.64 -0.5 703,009 + DZA65_RS03315 0.64 -1.1 703,009 + DZA65_RS03315 0.64 +0.5 703,009 + DZA65_RS03315 0.64 -0.8 703,010 - DZA65_RS03315 0.65 -2.1 703,010 - DZA65_RS03315 0.65 -0.5 703,010 - DZA65_RS03315 0.65 +0.1 703,010 - DZA65_RS03315 0.65 +2.2 703,010 - DZA65_RS03315 0.65 +0.7 703,010 - DZA65_RS03315 0.65 +0.9 703,010 - DZA65_RS03315 0.65 -1.0 703,104 + DZA65_RS03315 0.72 -2.2 703,105 - DZA65_RS03315 0.72 +1.7 703,105 - DZA65_RS03315 0.72 -1.4 703,105 - DZA65_RS03315 0.72 +0.1 703,107 + DZA65_RS03315 0.72 +1.7 703,107 + DZA65_RS03315 0.72 -0.1
Or see this region's nucleotide sequence