Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02325 and DZA65_RS02330 are separated by 105 nucleotides DZA65_RS02330 and DZA65_RS02335 overlap by 4 nucleotides DZA65_RS02335 and DZA65_RS02340 are separated by 35 nucleotides
DZA65_RS02325: DZA65_RS02325 - ABC transporter permease, at 502,372 to 503,298
_RS02325
DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381
_RS02330
DZA65_RS02335: DZA65_RS02335 - ABC transporter ATP-binding protein, at 504,378 to 505,241
_RS02335
DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695
_RS02340
Position (kb) 503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 502.488 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.568 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.956 kb on - strand, within DZA65_RS02325 at 503.006 kb on + strand, within DZA65_RS02325 at 503.126 kb on + strand, within DZA65_RS02325 at 503.127 kb on - strand at 503.159 kb on + strand, within DZA65_RS02325 at 503.169 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.275 kb on - strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.325 kb on - strand at 503.325 kb on - strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.599 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.887 kb on - strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.148 kb on - strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.420 kb on - strand at 504.420 kb on - strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.438 kb on - strand at 504.524 kb on + strand, within DZA65_RS02335 at 504.525 kb on - strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.539 kb on + strand, within DZA65_RS02335 at 504.724 kb on - strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.810 kb on - strand, within DZA65_RS02335 at 504.986 kb on - strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.058 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.167 kb on + strand at 505.167 kb on + strand at 505.167 kb on + strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.239 kb on + strand at 505.240 kb on - strand at 505.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 502,488 + DZA65_RS02325 0.13 -0.9 502,535 + DZA65_RS02325 0.18 +0.0 502,535 + DZA65_RS02325 0.18 +0.4 502,536 - DZA65_RS02325 0.18 -2.4 502,536 - DZA65_RS02325 0.18 -0.5 502,568 - DZA65_RS02325 0.21 -1.4 502,769 - DZA65_RS02325 0.43 +0.4 502,769 - DZA65_RS02325 0.43 +0.9 502,801 + DZA65_RS02325 0.46 -0.6 502,801 + DZA65_RS02325 0.46 -0.6 502,801 + DZA65_RS02325 0.46 +0.1 502,802 - DZA65_RS02325 0.46 +1.4 502,802 - DZA65_RS02325 0.46 -0.9 502,802 - DZA65_RS02325 0.46 -0.9 502,802 - DZA65_RS02325 0.46 -1.0 502,802 - DZA65_RS02325 0.46 +0.7 502,802 - DZA65_RS02325 0.46 +1.4 502,802 - DZA65_RS02325 0.46 -0.3 502,814 + DZA65_RS02325 0.48 -0.6 502,814 + DZA65_RS02325 0.48 -2.3 502,815 - DZA65_RS02325 0.48 -1.1 502,815 - DZA65_RS02325 0.48 -0.4 502,815 - DZA65_RS02325 0.48 +0.3 502,815 - DZA65_RS02325 0.48 -1.6 502,815 - DZA65_RS02325 0.48 +1.7 502,890 + DZA65_RS02325 0.56 +0.7 502,890 + DZA65_RS02325 0.56 +1.1 502,890 + DZA65_RS02325 0.56 +0.0 502,890 + DZA65_RS02325 0.56 +1.4 502,890 + -0.6 502,890 + DZA65_RS02325 0.56 -0.3 502,890 + DZA65_RS02325 0.56 -0.6 502,890 + DZA65_RS02325 0.56 -0.1 502,890 + DZA65_RS02325 0.56 -1.0 502,890 + DZA65_RS02325 0.56 -1.3 502,890 + DZA65_RS02325 0.56 +0.1 502,891 - DZA65_RS02325 0.56 -0.3 502,891 - DZA65_RS02325 0.56 +1.7 502,891 - DZA65_RS02325 0.56 +0.7 502,891 - DZA65_RS02325 0.56 +1.7 502,891 - DZA65_RS02325 0.56 -0.4 502,956 - DZA65_RS02325 0.63 -0.1 503,006 + DZA65_RS02325 0.68 -0.0 503,126 + DZA65_RS02325 0.81 -0.9 503,127 - -0.9 503,159 + DZA65_RS02325 0.85 +1.3 503,169 + DZA65_RS02325 0.86 -0.1 503,176 + DZA65_RS02325 0.87 -1.0 503,176 + DZA65_RS02325 0.87 +0.1 503,176 + DZA65_RS02325 0.87 -0.3 503,176 + DZA65_RS02325 0.87 -1.2 503,176 + DZA65_RS02325 0.87 -3.1 503,176 + DZA65_RS02325 0.87 -0.3 503,176 + DZA65_RS02325 0.87 -1.3 503,176 + DZA65_RS02325 0.87 +1.1 503,177 - DZA65_RS02325 0.87 -1.6 503,177 - DZA65_RS02325 0.87 +3.1 503,177 - DZA65_RS02325 0.87 -1.0 503,177 - DZA65_RS02325 0.87 -1.4 503,177 - DZA65_RS02325 0.87 -0.3 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 -0.8 503,177 - DZA65_RS02325 0.87 -0.6 503,177 - DZA65_RS02325 0.87 -4.0 503,177 - DZA65_RS02325 0.87 -0.3 503,177 - DZA65_RS02325 0.87 -0.9 503,177 - DZA65_RS02325 0.87 -0.8 503,177 - DZA65_RS02325 0.87 -1.5 503,177 - DZA65_RS02325 0.87 +0.1 503,177 - DZA65_RS02325 0.87 -1.7 503,275 - -0.9 503,324 + +0.9 503,324 + +0.1 503,324 + +1.1 503,325 - +0.1 503,325 - -0.3 503,331 + -1.1 503,331 + -0.7 503,331 + -2.9 503,331 + +1.3 503,331 + +1.7 503,332 - +2.3 503,332 - +1.0 503,332 - -1.1 503,332 - -0.6 503,332 - -0.3 503,332 - -0.1 503,332 - -1.3 503,337 + -1.3 503,337 + +0.1 503,337 + -1.0 503,337 + +1.7 503,337 + -1.6 503,337 + +1.7 503,337 + -0.9 503,337 + -1.6 503,337 + -2.4 503,337 + -0.3 503,337 + +0.7 503,337 + -1.6 503,337 + -2.2 503,337 + -2.2 503,337 + -1.1 503,337 + -0.3 503,337 + -2.7 503,337 + -1.1 503,337 + +1.1 503,337 + -1.0 503,337 + -1.1 503,338 - +2.7 503,338 - -1.1 503,338 - -0.6 503,338 - +0.4 503,338 - -0.1 503,338 - -1.1 503,338 - +0.9 503,338 - +0.0 503,338 - -1.7 503,338 - +0.7 503,338 - -0.8 503,338 - -0.7 503,338 - +0.1 503,338 - -1.1 503,338 - +0.1 503,338 - +1.7 503,343 + +1.3 503,343 + +0.7 503,343 + +0.9 503,599 - DZA65_RS02330 0.20 -1.9 503,798 - DZA65_RS02330 0.40 +1.4 503,798 - DZA65_RS02330 0.40 +1.0 503,886 + DZA65_RS02330 0.49 -0.9 503,886 + DZA65_RS02330 0.49 -0.3 503,886 + DZA65_RS02330 0.49 -0.0 503,886 + DZA65_RS02330 0.49 +1.1 503,886 + DZA65_RS02330 0.49 -0.5 503,886 + DZA65_RS02330 0.49 -0.9 503,887 - DZA65_RS02330 0.49 -1.3 504,082 + DZA65_RS02330 0.69 -1.7 504,082 + DZA65_RS02330 0.69 -0.9 504,083 - DZA65_RS02330 0.69 -1.6 504,083 - DZA65_RS02330 0.69 +1.0 504,083 - DZA65_RS02330 0.69 -1.2 504,083 - DZA65_RS02330 0.69 -0.3 504,083 - DZA65_RS02330 0.69 -1.6 504,083 - DZA65_RS02330 0.69 +0.4 504,083 - DZA65_RS02330 0.69 +0.1 504,083 - DZA65_RS02330 0.69 -1.1 504,083 - DZA65_RS02330 0.69 +0.7 504,083 - DZA65_RS02330 0.69 -1.1 504,083 - DZA65_RS02330 0.69 +0.9 504,083 - DZA65_RS02330 0.69 +0.7 504,145 + DZA65_RS02330 0.76 +0.5 504,145 + DZA65_RS02330 0.76 +1.7 504,148 - DZA65_RS02330 0.76 +1.7 504,168 + DZA65_RS02330 0.78 +0.1 504,168 + DZA65_RS02330 0.78 -1.9 504,169 - DZA65_RS02330 0.78 -1.3 504,169 - DZA65_RS02330 0.78 -1.2 504,169 - DZA65_RS02330 0.78 +0.1 504,264 + DZA65_RS02330 0.88 -0.4 504,264 + DZA65_RS02330 0.88 -0.6 504,314 - +0.7 504,314 - -1.3 504,314 - +0.4 504,314 - -1.1 504,314 - +1.0 504,420 - +0.1 504,420 - -0.3 504,437 + +0.3 504,437 + +0.1 504,437 + -1.6 504,438 - -0.9 504,524 + DZA65_RS02335 0.17 -1.6 504,525 - DZA65_RS02335 0.17 +0.4 504,529 + DZA65_RS02335 0.17 +1.1 504,529 + DZA65_RS02335 0.17 +0.3 504,529 + DZA65_RS02335 0.17 -0.9 504,530 - DZA65_RS02335 0.18 +3.6 504,530 - DZA65_RS02335 0.18 -0.4 504,530 - DZA65_RS02335 0.18 -1.3 504,530 - DZA65_RS02335 0.18 -0.6 504,530 - DZA65_RS02335 0.18 -1.0 504,539 + DZA65_RS02335 0.19 +0.9 504,724 - DZA65_RS02335 0.40 -0.1 504,809 + DZA65_RS02335 0.50 +0.1 504,809 + DZA65_RS02335 0.50 -3.2 504,809 + DZA65_RS02335 0.50 -0.2 504,809 + DZA65_RS02335 0.50 +0.5 504,809 + DZA65_RS02335 0.50 -0.0 504,809 + DZA65_RS02335 0.50 -0.5 504,810 - DZA65_RS02335 0.50 -0.9 504,986 - DZA65_RS02335 0.70 +2.1 505,041 + DZA65_RS02335 0.77 -2.1 505,041 + DZA65_RS02335 0.77 -0.6 505,042 - DZA65_RS02335 0.77 -0.1 505,042 - DZA65_RS02335 0.77 -1.8 505,042 - DZA65_RS02335 0.77 -0.3 505,058 + DZA65_RS02335 0.79 +0.7 505,077 + DZA65_RS02335 0.81 +0.7 505,077 + DZA65_RS02335 0.81 +0.7 505,078 - DZA65_RS02335 0.81 -1.4 505,078 - DZA65_RS02335 0.81 +0.7 505,145 - DZA65_RS02335 0.89 -1.1 505,145 - DZA65_RS02335 0.89 -1.3 505,167 + -1.0 505,167 + -0.4 505,167 + +0.7 505,168 - -0.9 505,168 - -1.2 505,168 - -0.8 505,168 - -2.2 505,239 + -1.3 505,240 - +1.7 505,313 + +1.0
Or see this region's nucleotide sequence