Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01725 and DZA65_RS01730 overlap by 1 nucleotides DZA65_RS01730 and DZA65_RS01735 are separated by 186 nucleotides
DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392
_RS01725
DZA65_RS01730: DZA65_RS01730 - esterase YqiA, at 375,392 to 375,973
_RS01730
DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055
_RS01735
Position (kb) 375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 374.449 kb on + strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.450 kb on - strand at 374.450 kb on - strand at 374.509 kb on + strand at 374.510 kb on - strand at 374.513 kb on + strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.563 kb on - strand at 374.563 kb on - strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.624 kb on - strand at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.772 kb on - strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.804 kb on + strand, within DZA65_RS01725 at 374.805 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.047 kb on - strand, within DZA65_RS01725 at 375.080 kb on + strand, within DZA65_RS01725 at 375.081 kb on - strand, within DZA65_RS01725 at 375.174 kb on - strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.339 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.387 kb on + strand at 375.388 kb on - strand at 375.407 kb on + strand at 375.408 kb on - strand at 375.408 kb on - strand at 375.519 kb on - strand, within DZA65_RS01730 at 375.609 kb on - strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.719 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.759 kb on - strand, within DZA65_RS01730 at 375.845 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.864 kb on - strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.901 kb on + strand, within DZA65_RS01730 at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 376.055 kb on + strand at 376.056 kb on - strand at 376.056 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.093 kb on + strand at 376.093 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 374,449 + -0.4 374,449 + -1.1 374,449 + -1.5 374,450 - +2.8 374,450 - +2.6 374,509 + +0.8 374,510 - +0.3 374,513 + -1.2 374,514 - +0.8 374,514 - +3.4 374,514 - +0.2 374,521 + -0.3 374,521 + -0.8 374,521 + -1.5 374,521 + -0.6 374,521 + -0.2 374,521 + -1.1 374,521 + -0.2 374,521 + -1.6 374,521 + -0.9 374,521 + -1.9 374,521 + +0.2 374,521 + -0.6 374,521 + -2.0 374,521 + +0.2 374,521 + -0.1 374,522 - +0.8 374,522 - -0.8 374,522 - -0.3 374,522 - -1.0 374,522 - -1.4 374,522 - -0.6 374,522 - +0.5 374,522 - +0.5 374,522 - +0.6 374,522 - +0.1 374,522 - +0.2 374,522 - +0.5 374,522 - -0.8 374,522 - -0.2 374,562 + -1.3 374,562 + -0.2 374,562 + -0.1 374,563 - -1.3 374,563 - -2.6 374,623 + +0.3 374,623 + -0.9 374,623 + -1.0 374,623 + -0.2 374,624 - -0.6 374,675 + DZA65_RS01725 0.13 -0.2 374,675 + DZA65_RS01725 0.13 -1.9 374,675 + DZA65_RS01725 0.13 -0.5 374,675 + DZA65_RS01725 0.13 -0.5 374,675 + DZA65_RS01725 0.13 -2.1 374,676 - DZA65_RS01725 0.13 +0.5 374,676 - DZA65_RS01725 0.13 +0.8 374,676 - DZA65_RS01725 0.13 +0.5 374,676 - DZA65_RS01725 0.13 -0.9 374,676 - DZA65_RS01725 0.13 -1.0 374,679 + DZA65_RS01725 0.14 -1.3 374,679 + DZA65_RS01725 0.14 -0.6 374,679 + DZA65_RS01725 0.14 -0.4 374,680 - DZA65_RS01725 0.14 -1.0 374,680 - DZA65_RS01725 0.14 +1.8 374,680 - DZA65_RS01725 0.14 -0.3 374,680 - DZA65_RS01725 0.14 -0.2 374,771 + DZA65_RS01725 0.25 +0.7 374,771 + DZA65_RS01725 0.25 -1.8 374,772 - DZA65_RS01725 0.25 -1.2 374,784 + DZA65_RS01725 0.26 +0.2 374,784 + DZA65_RS01725 0.26 -0.8 374,784 + DZA65_RS01725 0.26 +0.6 374,784 + DZA65_RS01725 0.26 -1.6 374,784 + DZA65_RS01725 0.26 +1.1 374,785 - DZA65_RS01725 0.27 -2.3 374,785 - DZA65_RS01725 0.27 -0.8 374,785 - DZA65_RS01725 0.27 +0.5 374,785 - DZA65_RS01725 0.27 -0.2 374,785 - DZA65_RS01725 0.27 +0.8 374,785 - DZA65_RS01725 0.27 -1.4 374,785 - DZA65_RS01725 0.27 +1.3 374,785 - DZA65_RS01725 0.27 +0.2 374,804 + DZA65_RS01725 0.29 +0.5 374,805 - DZA65_RS01725 0.29 -0.2 375,039 - DZA65_RS01725 0.57 -0.5 375,039 - DZA65_RS01725 0.57 -0.5 375,039 - DZA65_RS01725 0.57 +0.7 375,047 - DZA65_RS01725 0.58 -0.5 375,080 + DZA65_RS01725 0.62 -0.4 375,081 - DZA65_RS01725 0.62 +0.2 375,174 - DZA65_RS01725 0.74 -0.5 375,275 + DZA65_RS01725 0.86 -1.3 375,275 + DZA65_RS01725 0.86 -0.8 375,275 + DZA65_RS01725 0.86 +1.5 375,275 + DZA65_RS01725 0.86 -0.6 375,276 - DZA65_RS01725 0.86 -0.5 375,276 - DZA65_RS01725 0.86 -1.5 375,276 - DZA65_RS01725 0.86 +0.2 375,276 - DZA65_RS01725 0.86 -0.3 375,339 + +1.8 375,371 + +0.0 375,371 + -1.2 375,371 + -0.5 375,387 + -0.2 375,388 - -1.8 375,407 + +1.7 375,408 - -1.6 375,408 - -0.7 375,519 - DZA65_RS01730 0.22 -0.5 375,609 - DZA65_RS01730 0.37 -1.2 375,611 + DZA65_RS01730 0.38 -1.4 375,611 + DZA65_RS01730 0.38 +0.0 375,611 + DZA65_RS01730 0.38 +0.8 375,612 - DZA65_RS01730 0.38 -0.8 375,612 - DZA65_RS01730 0.38 +0.2 375,612 - DZA65_RS01730 0.38 +0.6 375,677 + DZA65_RS01730 0.49 +0.6 375,677 + DZA65_RS01730 0.49 +0.7 375,677 + DZA65_RS01730 0.49 -1.2 375,677 + DZA65_RS01730 0.49 -0.8 375,678 - DZA65_RS01730 0.49 -1.9 375,678 - DZA65_RS01730 0.49 -0.8 375,678 - DZA65_RS01730 0.49 -0.1 375,719 + DZA65_RS01730 0.56 -0.4 375,734 + DZA65_RS01730 0.59 -0.2 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +0.5 375,734 + -0.2 375,734 + DZA65_RS01730 0.59 -0.8 375,734 + DZA65_RS01730 0.59 +0.1 375,734 + DZA65_RS01730 0.59 -1.1 375,734 + DZA65_RS01730 0.59 +0.4 375,734 + DZA65_RS01730 0.59 +0.8 375,734 + DZA65_RS01730 0.59 -0.5 375,734 + DZA65_RS01730 0.59 -1.2 375,734 + DZA65_RS01730 0.59 +0.2 375,734 + DZA65_RS01730 0.59 -0.5 375,734 + DZA65_RS01730 0.59 -2.0 375,734 + DZA65_RS01730 0.59 +0.3 375,734 + DZA65_RS01730 0.59 -1.6 375,734 + DZA65_RS01730 0.59 -1.5 375,734 + DZA65_RS01730 0.59 +0.8 375,734 + DZA65_RS01730 0.59 +1.2 375,734 + +0.8 375,734 + DZA65_RS01730 0.59 -0.5 375,735 - DZA65_RS01730 0.59 -1.1 375,735 - DZA65_RS01730 0.59 +1.0 375,735 - DZA65_RS01730 0.59 +0.2 375,735 - DZA65_RS01730 0.59 -0.2 375,735 - DZA65_RS01730 0.59 +0.4 375,735 - DZA65_RS01730 0.59 +0.0 375,735 - DZA65_RS01730 0.59 -0.8 375,735 - DZA65_RS01730 0.59 +0.8 375,735 - DZA65_RS01730 0.59 -0.4 375,735 - DZA65_RS01730 0.59 -0.3 375,735 - DZA65_RS01730 0.59 +0.5 375,735 - DZA65_RS01730 0.59 -0.8 375,735 - DZA65_RS01730 0.59 -2.4 375,735 - DZA65_RS01730 0.59 +0.8 375,735 - DZA65_RS01730 0.59 -0.5 375,741 + DZA65_RS01730 0.60 +2.6 375,741 + DZA65_RS01730 0.60 -0.8 375,741 + DZA65_RS01730 0.60 +2.1 375,741 + DZA65_RS01730 0.60 -1.1 375,742 - DZA65_RS01730 0.60 +0.0 375,742 - DZA65_RS01730 0.60 -0.8 375,742 - DZA65_RS01730 0.60 -0.5 375,758 + DZA65_RS01730 0.63 -0.1 375,758 + DZA65_RS01730 0.63 +1.8 375,758 + DZA65_RS01730 0.63 -1.0 375,759 - DZA65_RS01730 0.63 +0.2 375,845 + DZA65_RS01730 0.78 -0.1 375,863 + DZA65_RS01730 0.81 +0.0 375,863 + DZA65_RS01730 0.81 +0.8 375,863 + DZA65_RS01730 0.81 +0.6 375,863 + DZA65_RS01730 0.81 +1.1 375,863 + DZA65_RS01730 0.81 -2.2 375,863 + DZA65_RS01730 0.81 +1.2 375,864 - DZA65_RS01730 0.81 +0.1 375,866 + DZA65_RS01730 0.81 -1.4 375,866 + DZA65_RS01730 0.81 -0.5 375,866 + DZA65_RS01730 0.81 -0.2 375,866 + DZA65_RS01730 0.81 +0.0 375,866 + DZA65_RS01730 0.81 -0.5 375,866 + DZA65_RS01730 0.81 -1.6 375,867 - DZA65_RS01730 0.82 +0.3 375,867 - DZA65_RS01730 0.82 -0.3 375,867 - DZA65_RS01730 0.82 -0.2 375,867 - DZA65_RS01730 0.82 -0.5 375,901 + DZA65_RS01730 0.87 +0.4 375,929 + +1.8 375,929 + -1.5 375,929 + +0.8 375,929 + -0.2 375,929 + +0.2 375,929 + +1.2 375,929 + -2.1 375,929 + -2.8 375,930 - -0.2 375,930 - -1.1 375,930 - -0.2 375,930 - -2.3 375,930 - +0.8 376,055 + +0.2 376,056 - +0.2 376,056 - +0.2 376,075 - -1.5 376,075 - -1.4 376,093 + +1.8 376,093 + -1.0 376,106 + -1.0 376,106 + +0.5 376,106 + -1.0 376,106 + +0.2 376,106 + -0.4 376,106 + +0.2 376,106 + -0.8 376,107 - -1.1 376,107 - +0.2 376,107 - -0.5 376,108 + -0.1
Or see this region's nucleotide sequence