Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01645 and DZA65_RS01650 are separated by 235 nucleotides DZA65_RS01650 and DZA65_RS01655 overlap by 4 nucleotides DZA65_RS01655 and DZA65_RS01660 are separated by 93 nucleotides
DZA65_RS01645: DZA65_RS01645 - aerobic respiration two-component sensor histidine kinase ArcB, at 357,707 to 360,046
_RS01645
DZA65_RS01650: DZA65_RS01650 - isoprenoid biosynthesis glyoxalase ElbB, at 360,282 to 360,935
_RS01650
DZA65_RS01655: DZA65_RS01655 - monofunctional biosynthetic peptidoglycan transglycosylase, at 360,932 to 361,681
_RS01655
DZA65_RS01660: DZA65_RS01660 - alginate lyase family protein, at 361,775 to 363,076
_RS01660
Position (kb) 360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 359.292 kb on + strand, within DZA65_RS01645 at 359.357 kb on - strand, within DZA65_RS01645 at 359.395 kb on + strand, within DZA65_RS01645 at 359.395 kb on + strand, within DZA65_RS01645 at 359.490 kb on - strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.536 kb on - strand, within DZA65_RS01645 at 359.588 kb on - strand, within DZA65_RS01645 at 359.588 kb on - strand, within DZA65_RS01645 at 359.630 kb on + strand, within DZA65_RS01645 at 359.631 kb on - strand, within DZA65_RS01645 at 359.644 kb on + strand, within DZA65_RS01645 at 359.726 kb on + strand, within DZA65_RS01645 at 359.726 kb on + strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.937 kb on + strand at 359.938 kb on - strand at 359.958 kb on + strand at 359.958 kb on + strand at 359.958 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.124 kb on + strand at 360.124 kb on + strand at 360.130 kb on + strand at 360.144 kb on + strand at 360.145 kb on - strand at 360.145 kb on - strand at 360.173 kb on + strand at 360.173 kb on + strand at 360.173 kb on + strand at 360.174 kb on - strand at 360.174 kb on - strand at 360.174 kb on - strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.196 kb on - strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.252 kb on + strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.261 kb on + strand at 360.261 kb on + strand at 360.262 kb on - strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.277 kb on - strand at 360.277 kb on - strand at 360.277 kb on - strand at 360.301 kb on + strand at 360.302 kb on - strand at 360.321 kb on + strand at 360.489 kb on - strand, within DZA65_RS01650 at 360.638 kb on - strand, within DZA65_RS01650 at 360.641 kb on + strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.657 kb on - strand, within DZA65_RS01650 at 360.674 kb on - strand, within DZA65_RS01650 at 360.681 kb on - strand, within DZA65_RS01650 at 360.681 kb on - strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.734 kb on + strand, within DZA65_RS01650 at 360.735 kb on - strand, within DZA65_RS01650 at 360.735 kb on - strand, within DZA65_RS01650 at 360.755 kb on + strand, within DZA65_RS01650 at 360.756 kb on - strand, within DZA65_RS01650 at 360.770 kb on - strand, within DZA65_RS01650 at 360.805 kb on + strand, within DZA65_RS01650 at 360.805 kb on + strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.948 kb on + strand at 360.976 kb on - strand at 361.113 kb on + strand, within DZA65_RS01655 at 361.113 kb on + strand, within DZA65_RS01655 at 361.113 kb on + strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.261 kb on + strand, within DZA65_RS01655 at 361.262 kb on - strand, within DZA65_RS01655 at 361.262 kb on - strand at 361.262 kb on - strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.364 kb on - strand, within DZA65_RS01655 at 361.404 kb on + strand at 361.420 kb on + strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.433 kb on + strand, within DZA65_RS01655 at 361.441 kb on + strand, within DZA65_RS01655 at 361.441 kb on + strand at 361.442 kb on - strand, within DZA65_RS01655 at 361.473 kb on + strand, within DZA65_RS01655 at 361.473 kb on + strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.595 kb on + strand, within DZA65_RS01655 at 361.595 kb on + strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.676 kb on + strand at 361.676 kb on + strand at 361.699 kb on + strand at 361.699 kb on + strand at 361.700 kb on - strand at 361.700 kb on - strand at 361.740 kb on - strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.781 kb on + strand at 361.786 kb on + strand at 361.787 kb on - strand at 361.787 kb on - strand at 361.868 kb on + strand at 361.868 kb on + strand at 361.868 kb on + strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.873 kb on - strand at 361.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 359,292 + DZA65_RS01645 0.68 -1.3 359,357 - DZA65_RS01645 0.71 +0.7 359,395 + DZA65_RS01645 0.72 +0.7 359,395 + DZA65_RS01645 0.72 -2.2 359,490 - DZA65_RS01645 0.76 -0.5 359,535 + DZA65_RS01645 0.78 -1.4 359,535 + DZA65_RS01645 0.78 -0.5 359,535 + DZA65_RS01645 0.78 -1.0 359,535 + DZA65_RS01645 0.78 -3.3 359,535 + DZA65_RS01645 0.78 -1.3 359,536 - DZA65_RS01645 0.78 +1.8 359,588 - DZA65_RS01645 0.80 +0.1 359,588 - DZA65_RS01645 0.80 +1.0 359,630 + DZA65_RS01645 0.82 +0.8 359,631 - DZA65_RS01645 0.82 +1.7 359,644 + DZA65_RS01645 0.83 +0.5 359,726 + DZA65_RS01645 0.86 +0.3 359,726 + DZA65_RS01645 0.86 +0.5 359,727 - DZA65_RS01645 0.86 -0.8 359,727 - DZA65_RS01645 0.86 -0.7 359,727 - DZA65_RS01645 0.86 -0.2 359,727 - DZA65_RS01645 0.86 -1.5 359,727 - DZA65_RS01645 0.86 +0.0 359,727 - DZA65_RS01645 0.86 -0.2 359,937 + -1.3 359,938 - -0.8 359,958 + -1.0 359,958 + -0.6 359,958 + +0.3 360,074 + -1.9 360,074 + -1.6 360,074 + +0.8 360,074 + -0.6 360,074 + -1.1 360,075 - -1.7 360,075 - -1.0 360,075 - -1.6 360,075 - -1.1 360,075 - -1.3 360,075 - -1.5 360,099 + -2.0 360,099 + -1.5 360,099 + -1.0 360,099 + -1.2 360,099 + -1.6 360,099 + -0.2 360,099 + -1.0 360,100 - -0.3 360,100 - -1.9 360,100 - -1.0 360,100 - -0.0 360,100 - +0.1 360,100 - -1.6 360,100 - -1.0 360,100 - -1.2 360,100 - +0.1 360,100 - -0.7 360,124 + -1.7 360,124 + -1.3 360,130 + +0.6 360,144 + -0.7 360,145 - +0.8 360,145 - -1.9 360,173 + -0.3 360,173 + -0.0 360,173 + -0.2 360,174 - -0.2 360,174 - -0.3 360,174 - -0.5 360,180 + -0.1 360,180 + -0.2 360,180 + -1.5 360,180 + -0.7 360,181 - +0.8 360,181 - -0.4 360,181 - -0.8 360,181 - -1.3 360,196 - -0.7 360,221 + -1.8 360,221 + +0.5 360,221 + -0.3 360,221 + -0.7 360,221 + +0.2 360,221 + -1.0 360,221 + -0.6 360,222 - -2.1 360,222 - +0.4 360,222 - -1.2 360,222 - -0.8 360,222 - +0.3 360,222 - +1.8 360,222 - +0.1 360,252 + -0.3 360,253 - +0.7 360,253 - -0.2 360,253 - +3.7 360,261 + +1.5 360,261 + +0.3 360,262 - +2.0 360,276 + -1.0 360,276 + -1.2 360,276 + +0.3 360,276 + -1.5 360,277 - -0.8 360,277 - +0.7 360,277 - +1.4 360,301 + -0.2 360,302 - -2.7 360,321 + +0.3 360,489 - DZA65_RS01650 0.32 +0.4 360,638 - DZA65_RS01650 0.54 +0.3 360,641 + DZA65_RS01650 0.55 +1.0 360,642 - DZA65_RS01650 0.55 -0.5 360,642 - DZA65_RS01650 0.55 -1.4 360,642 - DZA65_RS01650 0.55 -0.7 360,657 - DZA65_RS01650 0.57 -0.5 360,674 - DZA65_RS01650 0.60 +0.1 360,681 - DZA65_RS01650 0.61 +1.3 360,681 - DZA65_RS01650 0.61 +0.5 360,698 + DZA65_RS01650 0.64 +0.8 360,698 + DZA65_RS01650 0.64 +0.8 360,698 + DZA65_RS01650 0.64 -0.5 360,699 - DZA65_RS01650 0.64 +2.4 360,699 - DZA65_RS01650 0.64 +0.3 360,699 - DZA65_RS01650 0.64 -0.0 360,699 - DZA65_RS01650 0.64 +1.8 360,699 - DZA65_RS01650 0.64 -1.0 360,734 + DZA65_RS01650 0.69 -1.5 360,735 - DZA65_RS01650 0.69 -1.2 360,735 - DZA65_RS01650 0.69 -1.0 360,755 + DZA65_RS01650 0.72 -0.5 360,756 - DZA65_RS01650 0.72 +1.8 360,770 - DZA65_RS01650 0.75 +1.8 360,805 + DZA65_RS01650 0.80 +1.4 360,805 + DZA65_RS01650 0.80 -0.2 360,806 - DZA65_RS01650 0.80 -0.5 360,806 - DZA65_RS01650 0.80 -0.2 360,806 - DZA65_RS01650 0.80 -2.5 360,806 - DZA65_RS01650 0.80 -0.2 360,855 + DZA65_RS01650 0.88 -1.3 360,855 + DZA65_RS01650 0.88 -0.7 360,855 + DZA65_RS01650 0.88 +0.3 360,855 + DZA65_RS01650 0.88 +0.3 360,856 - DZA65_RS01650 0.88 -0.7 360,856 - DZA65_RS01650 0.88 +0.7 360,856 - DZA65_RS01650 0.88 +0.3 360,856 - DZA65_RS01650 0.88 -1.6 360,856 - DZA65_RS01650 0.88 -0.2 360,856 - DZA65_RS01650 0.88 -0.3 360,856 - DZA65_RS01650 0.88 -2.4 360,948 + +0.3 360,976 - -0.3 361,113 + DZA65_RS01655 0.24 -0.2 361,113 + DZA65_RS01655 0.24 +0.0 361,113 + DZA65_RS01655 0.24 -0.7 361,114 - DZA65_RS01655 0.24 -0.4 361,114 - DZA65_RS01655 0.24 +0.6 361,114 - DZA65_RS01655 0.24 -0.5 361,130 + DZA65_RS01655 0.26 +0.8 361,130 + DZA65_RS01655 0.26 +0.0 361,130 + DZA65_RS01655 0.26 +0.2 361,130 + DZA65_RS01655 0.26 +0.4 361,130 + DZA65_RS01655 0.26 +4.1 361,130 + DZA65_RS01655 0.26 -0.7 361,130 + DZA65_RS01655 0.26 +0.3 361,131 - DZA65_RS01655 0.27 -0.5 361,131 - DZA65_RS01655 0.27 +1.1 361,131 - DZA65_RS01655 0.27 -0.6 361,261 + DZA65_RS01655 0.44 -0.3 361,262 - DZA65_RS01655 0.44 +3.2 361,262 - -1.0 361,262 - DZA65_RS01655 0.44 -0.5 361,267 + DZA65_RS01655 0.45 -0.5 361,267 + DZA65_RS01655 0.45 +0.8 361,267 + DZA65_RS01655 0.45 -0.5 361,268 - DZA65_RS01655 0.45 +0.6 361,268 - DZA65_RS01655 0.45 -1.0 361,268 - DZA65_RS01655 0.45 -0.2 361,268 - DZA65_RS01655 0.45 +0.6 361,268 - DZA65_RS01655 0.45 +0.0 361,364 - DZA65_RS01655 0.58 -0.5 361,404 + -0.5 361,420 + DZA65_RS01655 0.65 -0.2 361,421 - DZA65_RS01655 0.65 +0.4 361,421 - DZA65_RS01655 0.65 -2.3 361,421 - DZA65_RS01655 0.65 -0.4 361,433 + DZA65_RS01655 0.67 +0.6 361,441 + DZA65_RS01655 0.68 +0.3 361,441 + -1.0 361,442 - DZA65_RS01655 0.68 +0.3 361,473 + DZA65_RS01655 0.72 -0.2 361,473 + DZA65_RS01655 0.72 -2.2 361,474 - DZA65_RS01655 0.72 -0.3 361,474 - DZA65_RS01655 0.72 +0.4 361,474 - DZA65_RS01655 0.72 -0.5 361,474 - DZA65_RS01655 0.72 -0.5 361,474 - DZA65_RS01655 0.72 -1.0 361,501 + DZA65_RS01655 0.76 +1.8 361,501 + DZA65_RS01655 0.76 -0.6 361,501 + DZA65_RS01655 0.76 -0.2 361,502 - DZA65_RS01655 0.76 +0.7 361,502 - DZA65_RS01655 0.76 -0.5 361,502 - DZA65_RS01655 0.76 -1.0 361,502 - DZA65_RS01655 0.76 +0.3 361,595 + DZA65_RS01655 0.88 -1.2 361,595 + DZA65_RS01655 0.88 -0.3 361,596 - DZA65_RS01655 0.89 -1.0 361,596 - DZA65_RS01655 0.89 -1.6 361,596 - DZA65_RS01655 0.89 -1.5 361,676 + -0.5 361,676 + +0.8 361,699 + -1.5 361,699 + -0.5 361,700 - -1.0 361,700 - -0.3 361,740 - +1.8 361,773 + +1.8 361,773 + +2.3 361,773 + +0.3 361,773 + +0.7 361,773 + +0.1 361,773 + -0.4 361,773 + +0.7 361,773 + -1.9 361,773 + -0.6 361,773 + +0.3 361,773 + +0.3 361,773 + -0.3 361,773 + +0.8 361,773 + -0.7 361,773 + -1.2 361,774 - -0.3 361,774 - -1.2 361,774 - -0.4 361,774 - +1.8 361,774 - +0.3 361,774 - +0.3 361,774 - -0.2 361,774 - -0.6 361,774 - -2.2 361,774 - +0.0 361,774 - +0.0 361,774 - -2.0 361,774 - -1.9 361,781 + -0.2 361,786 + -1.2 361,787 - -0.5 361,787 - -1.7 361,868 + +0.9 361,868 + -1.3 361,868 + +0.1 361,869 - +3.4 361,869 - -0.5 361,869 - +0.6 361,869 - +0.9 361,872 + -1.4 361,872 + +0.7 361,872 + +0.0 361,872 + -0.1 361,873 - +0.6 361,902 + +1.9
Or see this region's nucleotide sequence