Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00915

Experiment: Stem-Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS00910 and DZA65_RS00915 are separated by 54 nucleotidesDZA65_RS00915 and DZA65_RS00920 are separated by 401 nucleotides DZA65_RS00910: DZA65_RS00910 - ThiF family adenylyltransferase, at 206,263 to 207,396 _RS00910 DZA65_RS00915: DZA65_RS00915 - hypothetical protein, at 207,451 to 207,645 _RS00915 DZA65_RS00920: DZA65_RS00920 - hypothetical protein, at 208,047 to 210,521 _RS00920 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 206.523 kb on + strand, within DZA65_RS00910at 206.523 kb on + strand, within DZA65_RS00910at 206.524 kb on - strand, within DZA65_RS00910at 206.524 kb on - strand, within DZA65_RS00910at 206.525 kb on + strand, within DZA65_RS00910at 206.525 kb on + strand, within DZA65_RS00910at 206.528 kb on - strand, within DZA65_RS00910at 206.546 kb on - strand, within DZA65_RS00910at 206.563 kb on - strand, within DZA65_RS00910at 206.687 kb on - strand, within DZA65_RS00910at 206.733 kb on + strand, within DZA65_RS00910at 206.734 kb on - strand, within DZA65_RS00910at 206.849 kb on - strand, within DZA65_RS00910at 206.849 kb on - strand, within DZA65_RS00910at 206.860 kb on - strand, within DZA65_RS00910at 206.879 kb on + strand, within DZA65_RS00910at 206.879 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.886 kb on - strand, within DZA65_RS00910at 206.889 kb on - strand, within DZA65_RS00910at 206.952 kb on + strand, within DZA65_RS00910at 206.989 kb on + strand, within DZA65_RS00910at 206.990 kb on - strand, within DZA65_RS00910at 207.085 kb on + strand, within DZA65_RS00910at 207.086 kb on - strand, within DZA65_RS00910at 207.118 kb on - strand, within DZA65_RS00910at 207.322 kb on - strandat 207.351 kb on + strandat 207.392 kb on + strandat 207.392 kb on + strandat 207.585 kb on + strand, within DZA65_RS00915at 207.587 kb on + strand, within DZA65_RS00915at 207.732 kb on - strandat 207.733 kb on + strandat 207.733 kb on + strandat 207.734 kb on - strandat 207.734 kb on - strandat 207.740 kb on - strandat 207.763 kb on - strandat 207.763 kb on - strandat 207.767 kb on + strandat 207.770 kb on + strandat 207.771 kb on - strandat 207.771 kb on - strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.942 kb on + strandat 207.942 kb on + strandat 207.942 kb on + strandat 207.948 kb on + strandat 207.949 kb on - strandat 207.953 kb on + strandat 207.953 kb on + strandat 207.954 kb on - strandat 207.961 kb on + strandat 207.961 kb on + strandat 207.962 kb on - strandat 207.962 kb on - strandat 207.988 kb on - strandat 208.057 kb on + strandat 208.083 kb on + strandat 208.084 kb on - strandat 208.120 kb on + strandat 208.121 kb on - strandat 208.169 kb on - strandat 208.197 kb on + strandat 208.200 kb on - strandat 208.236 kb on - strandat 208.363 kb on + strand, within DZA65_RS00920at 208.376 kb on + strand, within DZA65_RS00920at 208.393 kb on + strand, within DZA65_RS00920at 208.397 kb on - strand, within DZA65_RS00920at 208.451 kb on - strand, within DZA65_RS00920at 208.599 kb on + strand, within DZA65_RS00920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
remove
206,523 + DZA65_RS00910 0.23 -0.7
206,523 + DZA65_RS00910 0.23 +0.3
206,524 - DZA65_RS00910 0.23 -0.1
206,524 - DZA65_RS00910 0.23 -0.1
206,525 + DZA65_RS00910 0.23 -0.4
206,525 + DZA65_RS00910 0.23 -1.1
206,528 - DZA65_RS00910 0.23 +0.9
206,546 - DZA65_RS00910 0.25 -2.3
206,563 - DZA65_RS00910 0.26 -0.2
206,687 - DZA65_RS00910 0.37 -0.6
206,733 + DZA65_RS00910 0.41 -1.4
206,734 - DZA65_RS00910 0.42 -0.6
206,849 - DZA65_RS00910 0.52 -0.8
206,849 - DZA65_RS00910 0.52 -0.9
206,860 - DZA65_RS00910 0.53 -0.7
206,879 + DZA65_RS00910 0.54 +0.9
206,879 + DZA65_RS00910 0.54 -0.8
206,883 + DZA65_RS00910 0.55 -0.4
206,883 + DZA65_RS00910 0.55 -0.3
206,883 + DZA65_RS00910 0.55 -0.1
206,886 - DZA65_RS00910 0.55 -1.4
206,889 - DZA65_RS00910 0.55 -0.3
206,952 + DZA65_RS00910 0.61 -1.4
206,989 + DZA65_RS00910 0.64 +0.2
206,990 - DZA65_RS00910 0.64 +0.9
207,085 + DZA65_RS00910 0.72 -0.7
207,086 - DZA65_RS00910 0.73 +0.2
207,118 - DZA65_RS00910 0.75 -0.4
207,322 - -0.8
207,351 + -0.1
207,392 + +0.7
207,392 + -0.8
207,585 + DZA65_RS00915 0.69 -0.4
207,587 + DZA65_RS00915 0.70 -0.4
207,732 - +0.9
207,733 + -0.9
207,733 + +0.2
207,734 - -1.5
207,734 - +1.5
207,740 - -0.7
207,763 - -1.4
207,763 - +0.9
207,767 + -1.1
207,770 + -0.3
207,771 - +0.3
207,771 - +0.6
207,926 + -0.4
207,926 + -0.2
207,942 + -0.9
207,942 + -0.7
207,942 + -0.6
207,948 + +0.7
207,949 - -2.1
207,953 + +0.9
207,953 + -1.0
207,954 - +0.9
207,961 + -0.8
207,961 + -1.4
207,962 - +0.9
207,962 - -0.8
207,988 - +0.1
208,057 + +4.1
208,083 + +0.9
208,084 - -0.4
208,120 + +0.7
208,121 - +0.9
208,169 - +0.3
208,197 + -0.6
208,200 - -0.7
208,236 - -0.3
208,363 + DZA65_RS00920 0.13 -1.9
208,376 + DZA65_RS00920 0.13 +0.9
208,393 + DZA65_RS00920 0.14 -0.5
208,397 - DZA65_RS00920 0.14 -0.4
208,451 - DZA65_RS00920 0.16 -0.0
208,599 + DZA65_RS00920 0.22 +0.8

Or see this region's nucleotide sequence