Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00905

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00900 and DZA65_RS00905 overlap by 20 nucleotidesDZA65_RS00905 and DZA65_RS00910 overlap by 8 nucleotides DZA65_RS00900: DZA65_RS00900 - ATP-binding cassette domain-containing protein, at 203,066 to 205,195 _RS00900 DZA65_RS00905: DZA65_RS00905 - ThiF family adenylyltransferase, at 205,176 to 206,270 _RS00905 DZA65_RS00910: DZA65_RS00910 - ThiF family adenylyltransferase, at 206,263 to 207,396 _RS00910 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2at 204.309 kb on - strand, within DZA65_RS00900at 204.461 kb on - strand, within DZA65_RS00900at 204.504 kb on - strand, within DZA65_RS00900at 204.504 kb on - strand, within DZA65_RS00900at 204.504 kb on - strand, within DZA65_RS00900at 204.510 kb on - strand, within DZA65_RS00900at 204.510 kb on - strand, within DZA65_RS00900at 204.556 kb on + strand, within DZA65_RS00900at 204.738 kb on - strand, within DZA65_RS00900at 204.759 kb on - strand, within DZA65_RS00900at 204.865 kb on + strand, within DZA65_RS00900at 204.910 kb on - strand, within DZA65_RS00900at 205.064 kb on - strandat 205.185 kb on - strandat 205.315 kb on - strand, within DZA65_RS00905at 205.388 kb on + strand, within DZA65_RS00905at 205.433 kb on + strand, within DZA65_RS00905at 205.549 kb on - strand, within DZA65_RS00905at 205.731 kb on - strand, within DZA65_RS00905at 205.855 kb on + strand, within DZA65_RS00905at 205.856 kb on - strand, within DZA65_RS00905at 205.856 kb on - strand, within DZA65_RS00905at 205.856 kb on - strand, within DZA65_RS00905at 205.919 kb on + strand, within DZA65_RS00905at 205.926 kb on - strand, within DZA65_RS00905at 205.950 kb on - strand, within DZA65_RS00905at 205.971 kb on - strand, within DZA65_RS00905at 206.012 kb on - strand, within DZA65_RS00905at 206.028 kb on + strandat 206.070 kb on + strand, within DZA65_RS00905at 206.146 kb on - strand, within DZA65_RS00905at 206.332 kb on + strandat 206.336 kb on + strandat 206.362 kb on - strandat 206.400 kb on + strand, within DZA65_RS00910at 206.401 kb on - strand, within DZA65_RS00910at 206.523 kb on + strand, within DZA65_RS00910at 206.523 kb on + strand, within DZA65_RS00910at 206.524 kb on - strand, within DZA65_RS00910at 206.524 kb on - strand, within DZA65_RS00910at 206.525 kb on + strand, within DZA65_RS00910at 206.525 kb on + strand, within DZA65_RS00910at 206.528 kb on - strand, within DZA65_RS00910at 206.546 kb on - strand, within DZA65_RS00910at 206.563 kb on - strand, within DZA65_RS00910at 206.687 kb on - strand, within DZA65_RS00910at 206.733 kb on + strand, within DZA65_RS00910at 206.734 kb on - strand, within DZA65_RS00910at 206.849 kb on - strand, within DZA65_RS00910at 206.849 kb on - strand, within DZA65_RS00910at 206.860 kb on - strand, within DZA65_RS00910at 206.879 kb on + strand, within DZA65_RS00910at 206.879 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.883 kb on + strand, within DZA65_RS00910at 206.886 kb on - strand, within DZA65_RS00910at 206.889 kb on - strand, within DZA65_RS00910at 206.952 kb on + strand, within DZA65_RS00910at 206.989 kb on + strand, within DZA65_RS00910at 206.990 kb on - strand, within DZA65_RS00910at 207.085 kb on + strand, within DZA65_RS00910at 207.086 kb on - strand, within DZA65_RS00910at 207.118 kb on - strand, within DZA65_RS00910

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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204,309 - DZA65_RS00900 0.58 -0.9
204,461 - DZA65_RS00900 0.65 -2.0
204,504 - DZA65_RS00900 0.68 +0.1
204,504 - DZA65_RS00900 0.68 -0.4
204,504 - DZA65_RS00900 0.68 +2.2
204,510 - DZA65_RS00900 0.68 -0.0
204,510 - DZA65_RS00900 0.68 -0.9
204,556 + DZA65_RS00900 0.70 -1.6
204,738 - DZA65_RS00900 0.78 -1.9
204,759 - DZA65_RS00900 0.79 +1.3
204,865 + DZA65_RS00900 0.84 -1.7
204,910 - DZA65_RS00900 0.87 -0.8
205,064 - +1.3
205,185 - -0.4
205,315 - DZA65_RS00905 0.13 +1.3
205,388 + DZA65_RS00905 0.19 +0.7
205,433 + DZA65_RS00905 0.23 -1.7
205,549 - DZA65_RS00905 0.34 +0.1
205,731 - DZA65_RS00905 0.51 +0.3
205,855 + DZA65_RS00905 0.62 -0.8
205,856 - DZA65_RS00905 0.62 +0.2
205,856 - DZA65_RS00905 0.62 -0.1
205,856 - DZA65_RS00905 0.62 +0.7
205,919 + DZA65_RS00905 0.68 -0.3
205,926 - DZA65_RS00905 0.68 +0.9
205,950 - DZA65_RS00905 0.71 +1.2
205,971 - DZA65_RS00905 0.73 -1.1
206,012 - DZA65_RS00905 0.76 -0.7
206,028 + +0.7
206,070 + DZA65_RS00905 0.82 -0.7
206,146 - DZA65_RS00905 0.89 -2.3
206,332 + +0.2
206,336 + +0.1
206,362 - -1.2
206,400 + DZA65_RS00910 0.12 -0.9
206,401 - DZA65_RS00910 0.12 -1.2
206,523 + DZA65_RS00910 0.23 -0.7
206,523 + DZA65_RS00910 0.23 +0.3
206,524 - DZA65_RS00910 0.23 -0.1
206,524 - DZA65_RS00910 0.23 -0.1
206,525 + DZA65_RS00910 0.23 -0.4
206,525 + DZA65_RS00910 0.23 -1.1
206,528 - DZA65_RS00910 0.23 +0.9
206,546 - DZA65_RS00910 0.25 -2.3
206,563 - DZA65_RS00910 0.26 -0.2
206,687 - DZA65_RS00910 0.37 -0.6
206,733 + DZA65_RS00910 0.41 -1.4
206,734 - DZA65_RS00910 0.42 -0.6
206,849 - DZA65_RS00910 0.52 -0.8
206,849 - DZA65_RS00910 0.52 -0.9
206,860 - DZA65_RS00910 0.53 -0.7
206,879 + DZA65_RS00910 0.54 +0.9
206,879 + DZA65_RS00910 0.54 -0.8
206,883 + DZA65_RS00910 0.55 -0.4
206,883 + DZA65_RS00910 0.55 -0.3
206,883 + DZA65_RS00910 0.55 -0.1
206,886 - DZA65_RS00910 0.55 -1.4
206,889 - DZA65_RS00910 0.55 -0.3
206,952 + DZA65_RS00910 0.61 -1.4
206,989 + DZA65_RS00910 0.64 +0.2
206,990 - DZA65_RS00910 0.64 +0.9
207,085 + DZA65_RS00910 0.72 -0.7
207,086 - DZA65_RS00910 0.73 +0.2
207,118 - DZA65_RS00910 0.75 -0.4

Or see this region's nucleotide sequence