Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00355

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Upstate
				remove
83,328	+	DZA65_RS00345	0.26	-0.4
83,328	+	DZA65_RS00345	0.26	-0.9
83,328	+	DZA65_RS00345	0.26	+0.3
83,328	+	DZA65_RS00345	0.26	-0.1
83,328	+	DZA65_RS00345	0.26	+1.3
83,328	+	DZA65_RS00345	0.26	-0.1
83,328	+	DZA65_RS00345	0.26	-0.4
83,329	-	DZA65_RS00345	0.26	+1.9
83,329	-	DZA65_RS00345	0.26	+1.3
83,329	-	DZA65_RS00345	0.26	-0.8
83,329	-	DZA65_RS00345	0.26	-0.7
83,329	-	DZA65_RS00345	0.26	+0.9
83,329	-	DZA65_RS00345	0.26	+1.0
83,426	+	DZA65_RS00345	0.37	-0.1
83,427	-	DZA65_RS00345	0.37	+0.0
83,465	+	DZA65_RS00345	0.41	-1.4
83,465	+	DZA65_RS00345	0.41	+0.3
83,465	+	DZA65_RS00345	0.41	-0.7
83,466	-	DZA65_RS00345	0.41	-0.9
83,552	+	DZA65_RS00345	0.51	-1.4
83,552	+	DZA65_RS00345	0.51	-1.7
83,610	+	DZA65_RS00345	0.57	-0.6
83,610	+	DZA65_RS00345	0.57	-0.1
83,774	+	DZA65_RS00345	0.76	-0.6
83,774	+	DZA65_RS00345	0.76	-0.9
83,775	-	DZA65_RS00345	0.76	-1.5
83,775	-	DZA65_RS00345	0.76	-1.7
83,916	+			-0.7
83,916	+			-2.3
83,916	+			+0.7
83,916	+			-0.9
83,917	-			-1.1
83,942	-			-1.1
83,952	+			+1.9
83,952	+			+0.6
83,952	+			-1.2
83,952	+			+1.9
83,952	+			-0.9
83,952	+			-0.4
83,952	+			+0.0
83,952	+			+1.3
83,952	+			-0.4
83,952	+			-0.1
83,952	+			-0.2
83,952	+			-0.9
83,952	+			+0.4
83,952	+			-1.1
83,952	+			-0.1
83,952	+			-0.9
83,952	+			-1.1
83,952	+			-0.7
83,952	+			-0.1
83,952	+			+3.2
83,952	+			-0.4
83,952	+			+0.9
83,952	+			-0.9
83,952	+			+1.9
83,952	+			-0.1
83,952	+			-0.1
83,952	+			+0.1
83,952	+			+0.9
83,952	+			+0.8
83,952	+			+1.2
83,952	+			+0.0
83,953	-			-1.1
83,953	-			-1.2
83,953	-			+0.5
83,953	-			-1.2
83,953	-			+1.9
83,953	-			+1.5
83,953	-			-0.1
83,953	-			+0.3
83,953	-			-2.0
83,953	-			-0.1
83,953	-			-1.4
83,953	-			-0.2
83,953	-			+0.9
83,953	-			+1.3
83,953	-			+0.6
83,953	-			-0.4
83,953	-			-1.1
83,953	-			+0.3
83,953	-			+0.5
83,953	-			+0.2
83,953	-			+0.9
83,953	-			-1.0
83,953	-			+0.9
83,953	-			-0.1
83,953	-			-0.2
83,953	-			-0.4
83,953	-			+1.4
83,953	-			+0.1
83,953	-			+0.6
83,953	-			-0.1
83,953	-			-0.4
83,954	+			-1.2
83,954	+			-0.9
83,954	+			+0.3
83,954	+			+0.2
83,954	+			+0.3
83,954	+			-0.2
83,954	+			+0.1
83,954	+			-0.4
83,954	+			-1.4
83,954	+			+0.1
83,954	+			-0.4
83,954	+			+0.4
83,954	+			-1.2
83,954	+			-0.4
83,954	+			-0.4
83,954	+			+1.9
83,955	-			+0.3
83,955	-			+0.3
83,955	-			+1.9
83,955	-			+1.8
83,955	-			-0.1
83,955	-			+0.1
83,955	-			+0.9
83,955	-			-0.7
83,955	-			+0.9
83,955	-			-0.8
83,955	-			-1.0
83,955	-			-1.4
83,955	-			-0.4
83,955	-			-0.7
83,988	+			-0.1
83,988	+			+0.9
84,003	-			+1.6
84,003	-			-1.2
84,004	+			+1.4
84,005	-			-1.7
84,009	+			-1.1
84,010	-			-1.1
84,010	-			-1.9
84,015	+			-1.2
84,016	-			-0.5
84,017	+			-0.3
84,017	+			-0.1
84,017	+			+0.3
84,017	+			+0.4
84,017	+			+1.3
84,018	-			-0.7
84,018	-			-1.5
84,018	-			-0.3
84,018	-			-1.5
84,018	-			-0.5
84,171	-	DZA65_RS00350	0.86	-1.5
84,175	-	DZA65_RS00350	0.88	-1.5
84,175	-	DZA65_RS00350	0.88	-1.0
84,175	-	DZA65_RS00350	0.88	-0.4
84,258	+			+0.3
84,278	+			-0.1
84,278	+			-0.4
84,278	+			-0.4
84,279	-			+0.3
84,279	-			+0.1
84,310	+			+0.1
84,313	+			-0.4
84,313	+			-1.5
84,313	+			-1.5
84,313	+			-1.8
84,313	+			-0.7
84,313	+			-0.1
84,313	+			+0.6
84,313	+			-0.1
84,314	-			-1.8
84,314	-			+0.5
84,314	-			+0.1
84,314	-			-0.9
84,314	-			-0.9
84,314	-			-0.7
84,314	-			+0.9
84,314	-			-1.0
84,314	-			-0.4
84,317	+			-1.4
84,317	+			+1.9
84,317	+			+0.3
84,317	+			+0.3
84,317	+			-2.0
84,317	+			-1.7
84,317	+			+0.3
84,317	+			-1.2
84,318	-			-1.9
84,318	-			-1.5
84,318	-			-0.7
84,318	-			-1.4
84,432	+			-0.8
84,432	+			-2.5
84,432	+			-0.7
84,433	-			-0.6
84,433	-			-0.4
84,433	-			-2.2
84,433	-			-0.9
84,438	+			-2.1
84,438	+			-1.8
84,438	+			-1.2
84,438	+			+0.3
84,438	+			-0.7
84,438	+			-0.7
84,439	-			+0.3
84,439	-			-1.7
84,439	-			-2.1
84,439	-			-3.0
84,439	-			-1.4
84,439	-			-2.0
84,439	-			-1.1
84,439	-			-0.1
84,439	-			-2.7
84,440	+			-1.1
84,474	+	DZA65_RS00355	0.12	-0.2
84,474	+	DZA65_RS00355	0.12	-1.1
84,475	-	DZA65_RS00355	0.12	-1.9
84,475	-	DZA65_RS00355	0.12	-1.5
84,475	-	DZA65_RS00355	0.12	-2.2
84,590	+	DZA65_RS00355	0.20	+0.3
84,612	+	DZA65_RS00355	0.22	+0.6
84,612	+	DZA65_RS00355	0.22	+0.3
84,612	+	DZA65_RS00355	0.22	-0.7
84,612	+	DZA65_RS00355	0.22	-0.7
84,612	+	DZA65_RS00355	0.22	-0.1
84,613	-	DZA65_RS00355	0.22	-1.0
84,613	-	DZA65_RS00355	0.22	-0.7
84,613	-	DZA65_RS00355	0.22	-2.6
84,613	-	DZA65_RS00355	0.22	+0.2
84,613	-	DZA65_RS00355	0.22	-1.5
84,613	-	DZA65_RS00355	0.22	-0.2
84,613	-	DZA65_RS00355	0.22	-0.7
84,613	-	DZA65_RS00355	0.22	-0.8
84,613	-	DZA65_RS00355	0.22	-1.6
84,613	-	DZA65_RS00355	0.22	-0.4
84,687	-	DZA65_RS00355	0.27	+1.5
84,689	+	DZA65_RS00355	0.27	-1.5
84,689	+	DZA65_RS00355	0.27	-1.8
84,689	+	DZA65_RS00355	0.27	-1.1
84,689	+	DZA65_RS00355	0.27	-0.4
84,689	+	DZA65_RS00355	0.27	-0.5
84,689	+	DZA65_RS00355	0.27	-1.8
84,689	+			+0.5
84,690	-	DZA65_RS00355	0.28	+1.9
84,690	-	DZA65_RS00355	0.28	-0.9
84,690	-	DZA65_RS00355	0.28	+0.5
84,690	-	DZA65_RS00355	0.28	-1.0
84,690	-	DZA65_RS00355	0.28	+0.9
84,690	-	DZA65_RS00355	0.28	-1.6
84,690	-	DZA65_RS00355	0.28	-0.6
84,711	+	DZA65_RS00355	0.29	-1.1
84,711	+	DZA65_RS00355	0.29	-2.9
84,711	+	DZA65_RS00355	0.29	+0.9
84,711	+	DZA65_RS00355	0.29	-1.4
84,711	+	DZA65_RS00355	0.29	+1.9
84,711	+	DZA65_RS00355	0.29	-0.3
84,711	+	DZA65_RS00355	0.29	+1.9
84,711	+	DZA65_RS00355	0.29	-1.1
84,712	-	DZA65_RS00355	0.29	-0.5
84,712	-	DZA65_RS00355	0.29	-1.5
84,712	-	DZA65_RS00355	0.29	+0.7
84,712	-	DZA65_RS00355	0.29	+0.9
84,712	-	DZA65_RS00355	0.29	-2.4
84,712	-	DZA65_RS00355	0.29	-0.9
84,712	-	DZA65_RS00355	0.29	-1.9
84,712	-	DZA65_RS00355	0.29	+1.4
84,712	-	DZA65_RS00355	0.29	-0.1
84,712	-	DZA65_RS00355	0.29	-2.6
84,739	-	DZA65_RS00355	0.31	+0.5
84,777	+	DZA65_RS00355	0.34	-0.2
84,777	+	DZA65_RS00355	0.34	+0.3
84,777	+	DZA65_RS00355	0.34	-1.2
84,777	+	DZA65_RS00355	0.34	-0.1
84,777	+	DZA65_RS00355	0.34	+1.9
84,888	+	DZA65_RS00355	0.42	+0.9
84,888	+	DZA65_RS00355	0.42	-0.4
84,888	+	DZA65_RS00355	0.42	-0.7
84,888	+	DZA65_RS00355	0.42	-0.9
84,888	+	DZA65_RS00355	0.42	-1.9
84,888	+	DZA65_RS00355	0.42	-0.4
84,889	-	DZA65_RS00355	0.42	-0.1
84,889	-	DZA65_RS00355	0.42	-2.9
84,889	-	DZA65_RS00355	0.42	-0.2
84,889	-	DZA65_RS00355	0.42	-0.7
84,889	-	DZA65_RS00355	0.42	-1.1
84,894	-	DZA65_RS00355	0.43	-1.4
84,987	-	DZA65_RS00355	0.50	+0.9
84,987	-	DZA65_RS00355	0.50	-1.5
85,109	+	DZA65_RS00355	0.59	-0.1
85,109	+	DZA65_RS00355	0.59	-1.0
85,110	-	DZA65_RS00355	0.59	-2.1
85,110	-	DZA65_RS00355	0.59	-0.9
85,163	+	DZA65_RS00355	0.63	-1.5
85,164	-	DZA65_RS00355	0.63	-0.5
85,164	-	DZA65_RS00355	0.63	-1.1
85,191	+	DZA65_RS00355	0.65	-0.9
85,191	+	DZA65_RS00355	0.65	+1.3
85,191	+	DZA65_RS00355	0.65	+0.3
85,191	+	DZA65_RS00355	0.65	-0.1
85,191	+	DZA65_RS00355	0.65	-0.4
85,191	+	DZA65_RS00355	0.65	+0.6
85,191	+	DZA65_RS00355	0.65	-0.7
85,192	-	DZA65_RS00355	0.65	-0.6
85,192	-	DZA65_RS00355	0.65	-0.9
85,192	-	DZA65_RS00355	0.65	-0.1
85,192	-	DZA65_RS00355	0.65	-0.4
85,192	-	DZA65_RS00355	0.65	-0.7
85,192	-	DZA65_RS00355	0.65	-0.7
85,192	-	DZA65_RS00355	0.65	-1.7
85,192	-	DZA65_RS00355	0.65	-0.7
85,192	-	DZA65_RS00355	0.65	-1.7
85,192	-	DZA65_RS00355	0.65	-0.6
85,192	-	DZA65_RS00355	0.65	-0.1
85,276	-	DZA65_RS00355	0.71	-0.5
85,276	-	DZA65_RS00355	0.71	+0.0
85,425	+	DZA65_RS00355	0.82	-0.8
85,461	+	DZA65_RS00355	0.85	-1.5
85,461	+	DZA65_RS00355	0.85	-1.1
85,461	+	DZA65_RS00355	0.85	-1.1
85,461	+	DZA65_RS00355	0.85	-1.0
85,461	+	DZA65_RS00355	0.85	+0.1
85,461	+	DZA65_RS00355	0.85	-1.8
85,462	-	DZA65_RS00355	0.85	-2.1
85,462	-	DZA65_RS00355	0.85	-2.7
85,462	-	DZA65_RS00355	0.85	-0.5
85,462	-	DZA65_RS00355	0.85	-0.1
85,542	-			-0.9
85,581	+			-1.9
85,581	+			-2.2
85,581	+			-3.1
85,581	+			-2.2
85,581	+			-0.4
85,581	+			-1.1
85,581	+			+1.9
85,582	-			-1.7
85,582	-			-1.4
85,582	-			-0.4
85,582	-			-0.7
85,666	-			-0.7
85,682	+			+1.2
85,682	+			-1.2
85,682	+			-1.2
85,682	+			-0.8
85,683	-			+0.0
85,719	-			+0.8
85,766	-			-1.0
86,034	+	DZA65_RS00360	0.54	-0.1
86,034	+			-1.2
86,034	+	DZA65_RS00360	0.54	-0.7
86,056	+	DZA65_RS00360	0.58	+0.5
86,056	+	DZA65_RS00360	0.58	-0.9
86,056	+	DZA65_RS00360	0.58	+0.3
86,057	-	DZA65_RS00360	0.58	+0.3
86,116	+	DZA65_RS00360	0.70	-0.1
86,116	+	DZA65_RS00360	0.70	-1.9
86,116	+	DZA65_RS00360	0.70	+0.3
86,117	-	DZA65_RS00360	0.70	-1.5
86,117	-	DZA65_RS00360	0.70	-0.1
86,117	-	DZA65_RS00360	0.70	-0.9
86,127	+	DZA65_RS00360	0.72	-0.4
86,127	+	DZA65_RS00360	0.72	+0.3
86,127	+	DZA65_RS00360	0.72	-0.7
86,127	+	DZA65_RS00360	0.72	+2.9
86,127	+	DZA65_RS00360	0.72	+0.1
86,127	+	DZA65_RS00360	0.72	+1.2
86,127	+			-0.1
86,128	-	DZA65_RS00360	0.73	-1.2
86,128	-	DZA65_RS00360	0.73	-0.2
86,128	-	DZA65_RS00360	0.73	-1.0
86,128	-	DZA65_RS00360	0.73	-0.1
86,237	+			-0.7
86,238	-			-1.0
86,245	-			-0.7
86,283	+			-0.7
86,289	-			+1.3
86,307	-			-1.2
86,324	+			-1.9
86,344	+			-1.2
86,345	-			-0.9
86,349	+			-1.1
86,349	+			-1.7
86,350	-			-1.4
86,352	+			+1.5
86,353	-			-0.1
86,427	+			+1.3
86,462	+			-1.2
86,462	+			+0.0
86,462	+			-0.1
86,462	+			-1.7
86,462	+			-2.1
86,463	-			+0.3
86,463	-			+1.0
86,463	-			-0.8
86,463	-			-0.7
86,472	+			+0.1
86,472	+			-1.4
86,472	+			+0.4
86,472	+			+0.3
86,472	+			+0.2
86,473	-			-0.5
86,473	-			+0.9
86,473	-			+0.1
86,493	+			+1.3
86,493	+			+3.7
86,494	-			-0.4
86,494	-			+0.5
86,494	-			+0.3
86,494	-			-0.1
86,494	-			-0.5
86,494	-			+0.3
86,648	-			-0.4

Or see this region's nucleotide sequence