Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22515

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,866,676	+		DZA65_RS22505	0.54	+0.7
4,866,676	+		DZA65_RS22505	0.54	-0.9
4,866,676	+		DZA65_RS22505	0.54	+0.0
4,866,677	-		DZA65_RS22505	0.54	+1.4
4,866,715	+		DZA65_RS22505	0.62	-2.0
4,866,716	-		DZA65_RS22505	0.62	+2.0
4,866,816	+		DZA65_RS22505	0.83	+1.7
4,866,816	+		DZA65_RS22505	0.83	-0.3
4,866,816	+		DZA65_RS22505	0.83	-0.1
4,866,817	-		DZA65_RS22505	0.83	-1.1
4,866,817	-		DZA65_RS22505	0.83	+0.2
4,866,817	-		DZA65_RS22505	0.83	+0.3
4,866,817	-		DZA65_RS22505	0.83	-0.6
4,866,817	-		DZA65_RS22505	0.83	-1.9
4,866,842	+		DZA65_RS22505	0.89	+1.4
4,866,842	+		DZA65_RS22505	0.89	+0.8
4,866,842	+		DZA65_RS22505	0.89	-0.8
4,866,842	+		DZA65_RS22505	0.89	-0.3
4,866,842	+		DZA65_RS22505	0.89	-0.8
4,866,842	+		DZA65_RS22505	0.89	-0.8
4,866,843	-		DZA65_RS22505	0.89	-0.4
4,866,843	-		DZA65_RS22505	0.89	-1.1
4,866,864	+				+0.4
4,866,864	+				-0.3
4,866,864	+				+0.7
4,866,864	+				-1.6
4,866,865	-				-0.1
4,866,865	-				+0.9
4,866,865	-				+1.5
4,866,865	-				+0.7
4,866,873	+				-1.8
4,866,873	+				+0.6
4,866,873	+				-1.1
4,866,873	+				-0.3
4,866,873	+				-0.9
4,866,874	-				-1.1
4,866,874	-				+0.8
4,866,874	-				+0.7
4,866,874	-				-0.1
4,866,876	+				-0.3
4,866,876	+				-0.6
4,866,876	+				+1.2
4,866,876	+				+0.7
4,866,876	+				-0.4
4,866,876	+				-1.1
4,866,877	-				-0.6
4,866,877	-				-0.5
4,866,893	+				+0.1
4,866,894	-				-1.1
4,866,909	-				-1.3
4,866,911	+				-2.6
4,866,911	+				-2.8
4,866,911	+				-0.5
4,866,911	+				-1.6
4,866,911	+				-0.6
4,866,912	-				+3.3
4,866,912	-				+2.5
4,866,912	-				+0.1
4,866,914	+				-1.5
4,866,915	-				-0.6
4,866,991	+		DZA65_RS22510	0.13	+0.7
4,866,992	-		DZA65_RS22510	0.13	+1.9
4,866,992	-				-1.0
4,867,075	-		DZA65_RS22510	0.25	+1.1
4,867,124	+		DZA65_RS22510	0.31	-0.8
4,867,124	+		DZA65_RS22510	0.31	+1.3
4,867,135	+		DZA65_RS22510	0.33	-0.0
4,867,135	+		DZA65_RS22510	0.33	-0.5
4,867,135	+		DZA65_RS22510	0.33	-0.3
4,867,135	+		DZA65_RS22510	0.33	-0.6
4,867,136	-		DZA65_RS22510	0.33	-1.3
4,867,138	+		DZA65_RS22510	0.33	-1.3
4,867,138	+		DZA65_RS22510	0.33	-0.5
4,867,138	+		DZA65_RS22510	0.33	-0.8
4,867,138	+		DZA65_RS22510	0.33	-0.9
4,867,138	+		DZA65_RS22510	0.33	+1.0
4,867,138	+		DZA65_RS22510	0.33	+0.1
4,867,152	+		DZA65_RS22510	0.35	+0.7
4,867,152	+		DZA65_RS22510	0.35	+1.7
4,867,240	+		DZA65_RS22510	0.47	-0.0
4,867,240	+		DZA65_RS22510	0.47	-1.7
4,867,240	+		DZA65_RS22510	0.47	+1.3
4,867,240	+		DZA65_RS22510	0.47	-0.3
4,867,241	-		DZA65_RS22510	0.47	-0.3
4,867,241	-		DZA65_RS22510	0.47	-1.8
4,867,241	-		DZA65_RS22510	0.47	+1.7
4,867,241	-		DZA65_RS22510	0.47	-0.4
4,867,241	-		DZA65_RS22510	0.47	+0.5
4,867,241	-		DZA65_RS22510	0.47	-1.0
4,867,296	+		DZA65_RS22510	0.55	-1.9
4,867,296	+		DZA65_RS22510	0.55	-1.8
4,867,296	+		DZA65_RS22510	0.55	+1.3
4,867,296	+		DZA65_RS22510	0.55	+1.4
4,867,296	+		DZA65_RS22510	0.55	+0.1
4,867,297	-		DZA65_RS22510	0.55	-0.6
4,867,299	+		DZA65_RS22510	0.55	+0.7
4,867,326	+		DZA65_RS22510	0.59	-0.3
4,867,326	+		DZA65_RS22510	0.59	+0.1
4,867,326	+		DZA65_RS22510	0.59	-0.5
4,867,326	+		DZA65_RS22510	0.59	+2.5
4,867,327	-		DZA65_RS22510	0.59	+1.7
4,867,327	-		DZA65_RS22510	0.59	+0.4
4,867,327	-		DZA65_RS22510	0.59	+1.1
4,867,327	-		DZA65_RS22510	0.59	+1.1
4,867,351	+		DZA65_RS22510	0.62	-2.3
4,867,351	+		DZA65_RS22510	0.62	-0.9
4,867,351	+		DZA65_RS22510	0.62	-0.7
4,867,351	+		DZA65_RS22510	0.62	-1.9
4,867,351	+		DZA65_RS22510	0.62	-0.0
4,867,351	+		DZA65_RS22510	0.62	+0.1
4,867,351	+		DZA65_RS22510	0.62	-0.3
4,867,351	+		DZA65_RS22510	0.62	+1.1
4,867,351	+		DZA65_RS22510	0.62	+1.7
4,867,351	+		DZA65_RS22510	0.62	-0.8
4,867,351	+		DZA65_RS22510	0.62	-1.7
4,867,351	+		DZA65_RS22510	0.62	-0.6
4,867,351	+		DZA65_RS22510	0.62	-0.1
4,867,351	+		DZA65_RS22510	0.62	-0.6
4,867,352	-		DZA65_RS22510	0.62	-0.7
4,867,352	-		DZA65_RS22510	0.62	+2.5
4,867,352	-		DZA65_RS22510	0.62	+1.4
4,867,352	-		DZA65_RS22510	0.62	+0.1
4,867,352	-		DZA65_RS22510	0.62	-0.1
4,867,352	-		DZA65_RS22510	0.62	-0.9
4,867,352	-		DZA65_RS22510	0.62	+1.0
4,867,352	-		DZA65_RS22510	0.62	+0.7
4,867,352	-		DZA65_RS22510	0.62	-1.1
4,867,352	-		DZA65_RS22510	0.62	-0.2
4,867,352	-		DZA65_RS22510	0.62	+1.2
4,867,352	-		DZA65_RS22510	0.62	-0.0
4,867,375	-		DZA65_RS22510	0.66	+1.2
4,867,558	+				+0.9
4,867,559	-				-1.3
4,867,582	+				-0.6
4,867,582	+				+1.1
4,867,582	+				-0.9
4,867,582	+				-0.6
4,867,583	-				-0.2
4,867,583	-				-2.8
4,867,583	-				+2.6
4,867,583	-				-0.6
4,867,583	-				+1.9
4,867,624	+				-1.5
4,867,624	+				-0.3
4,867,624	+				-1.6
4,867,624	+				+1.0
4,867,624	+				-0.3
4,867,625	-				-0.3
4,867,625	-				+0.5
4,867,625	-				+0.1
4,867,625	-				-3.2
4,867,625	-				+1.7
4,867,749	+		DZA65_RS22515	0.10	-0.6
4,867,749	+		DZA65_RS22515	0.10	+0.5
4,867,750	-		DZA65_RS22515	0.10	-0.3
4,867,750	-		DZA65_RS22515	0.10	+2.4
4,867,809	+		DZA65_RS22515	0.15	+0.7
4,867,809	+		DZA65_RS22515	0.15	-0.9
4,867,809	+		DZA65_RS22515	0.15	+0.9
4,867,809	+		DZA65_RS22515	0.15	-1.2
4,867,809	+		DZA65_RS22515	0.15	-1.1
4,867,809	+		DZA65_RS22515	0.15	+1.5
4,867,809	+		DZA65_RS22515	0.15	-0.5
4,867,809	+		DZA65_RS22515	0.15	-1.5
4,867,809	+		DZA65_RS22515	0.15	-1.2
4,867,810	-		DZA65_RS22515	0.15	+0.6
4,867,810	-		DZA65_RS22515	0.15	+2.4
4,867,810	-		DZA65_RS22515	0.15	-1.2
4,867,810	-		DZA65_RS22515	0.15	+1.0
4,867,811	+		DZA65_RS22515	0.15	-0.3
4,867,811	+		DZA65_RS22515	0.15	-0.9
4,867,812	-		DZA65_RS22515	0.15	-0.3
4,867,938	+		DZA65_RS22515	0.25	-0.0
4,867,938	+		DZA65_RS22515	0.25	-0.5
4,867,985	+		DZA65_RS22515	0.29	-1.7
4,867,985	+		DZA65_RS22515	0.29	+0.9
4,867,985	+		DZA65_RS22515	0.29	-0.1
4,867,985	+		DZA65_RS22515	0.29	+0.3
4,867,985	+		DZA65_RS22515	0.29	-2.4
4,867,985	+		DZA65_RS22515	0.29	-0.5
4,867,985	+		DZA65_RS22515	0.29	-0.3
4,867,986	-		DZA65_RS22515	0.29	+1.4
4,867,986	-		DZA65_RS22515	0.29	-0.5
4,867,986	-		DZA65_RS22515	0.29	+0.7
4,868,012	+		DZA65_RS22515	0.31	-1.3
4,868,012	+		DZA65_RS22515	0.31	+0.8
4,868,012	+		DZA65_RS22515	0.31	+0.7
4,868,012	+		DZA65_RS22515	0.31	+0.3
4,868,012	+		DZA65_RS22515	0.31	-0.3
4,868,012	+		DZA65_RS22515	0.31	-2.7
4,868,012	+		DZA65_RS22515	0.31	+0.1
4,868,012	+		DZA65_RS22515	0.31	+0.4
4,868,012	+		DZA65_RS22515	0.31	+0.5
4,868,013	-		DZA65_RS22515	0.31	-0.8
4,868,013	-		DZA65_RS22515	0.31	-1.6
4,868,013	-		DZA65_RS22515	0.31	+0.8
4,868,013	-		DZA65_RS22515	0.31	-2.1
4,868,013	-		DZA65_RS22515	0.31	-0.0
4,868,013	-		DZA65_RS22515	0.31	-1.8
4,868,013	-		DZA65_RS22515	0.31	-0.3
4,868,013	-		DZA65_RS22515	0.31	+0.0
4,868,013	-		DZA65_RS22515	0.31	-0.3
4,868,013	-		DZA65_RS22515	0.31	+0.2
4,868,028	+		DZA65_RS22515	0.33	-0.2
4,868,028	+		DZA65_RS22515	0.33	-1.2
4,868,028	+		DZA65_RS22515	0.33	-0.9
4,868,028	+		DZA65_RS22515	0.33	-0.6
4,868,028	+		DZA65_RS22515	0.33	-0.4
4,868,028	+		DZA65_RS22515	0.33	-1.8
4,868,028	+		DZA65_RS22515	0.33	-0.6
4,868,028	+		DZA65_RS22515	0.33	+0.4
4,868,028	+		DZA65_RS22515	0.33	+0.5
4,868,028	+		DZA65_RS22515	0.33	-0.4
4,868,028	+		DZA65_RS22515	0.33	-1.6
4,868,028	+		DZA65_RS22515	0.33	-2.4
4,868,028	+		DZA65_RS22515	0.33	-0.6
4,868,028	+		DZA65_RS22515	0.33	+1.2
4,868,028	+		DZA65_RS22515	0.33	-0.9
4,868,028	+		DZA65_RS22515	0.33	-0.5
4,868,028	+		DZA65_RS22515	0.33	+1.1
4,868,028	+		DZA65_RS22515	0.33	-0.9
4,868,028	+		DZA65_RS22515	0.33	-0.3
4,868,028	+		DZA65_RS22515	0.33	-0.8
4,868,028	+		DZA65_RS22515	0.33	-1.0
4,868,028	+		DZA65_RS22515	0.33	-0.6
4,868,028	+		DZA65_RS22515	0.33	+0.2
4,868,028	+		DZA65_RS22515	0.33	-2.3
4,868,028	+		DZA65_RS22515	0.33	+0.3
4,868,028	+		DZA65_RS22515	0.33	-0.4
4,868,028	+		DZA65_RS22515	0.33	-1.2
4,868,028	+		DZA65_RS22515	0.33	+1.2
4,868,028	+		DZA65_RS22515	0.33	+1.1
4,868,028	+		DZA65_RS22515	0.33	-0.3
4,868,028	+		DZA65_RS22515	0.33	+0.7
4,868,028	+		DZA65_RS22515	0.33	+0.2
4,868,028	+		DZA65_RS22515	0.33	+0.4
4,868,029	-		DZA65_RS22515	0.33	-1.0
4,868,029	-		DZA65_RS22515	0.33	+1.8
4,868,029	-		DZA65_RS22515	0.33	+2.4
4,868,029	-		DZA65_RS22515	0.33	-0.9
4,868,029	-		DZA65_RS22515	0.33	+1.1
4,868,029	-		DZA65_RS22515	0.33	-2.6
4,868,029	-		DZA65_RS22515	0.33	-0.8
4,868,029	-		DZA65_RS22515	0.33	-0.3
4,868,029	-		DZA65_RS22515	0.33	-1.6
4,868,029	-		DZA65_RS22515	0.33	+1.3
4,868,029	-		DZA65_RS22515	0.33	+1.7
4,868,029	-		DZA65_RS22515	0.33	+0.2
4,868,029	-		DZA65_RS22515	0.33	-0.9
4,868,029	-		DZA65_RS22515	0.33	-2.3
4,868,029	-		DZA65_RS22515	0.33	+1.1
4,868,029	-		DZA65_RS22515	0.33	+0.6
4,868,029	-		DZA65_RS22515	0.33	-2.2
4,868,029	-		DZA65_RS22515	0.33	-0.4
4,868,029	-		DZA65_RS22515	0.33	-1.3
4,868,029	-		DZA65_RS22515	0.33	-0.1
4,868,029	-		DZA65_RS22515	0.33	-1.3
4,868,029	-		DZA65_RS22515	0.33	-0.0
4,868,029	-		DZA65_RS22515	0.33	-0.5
4,868,029	-		DZA65_RS22515	0.33	+2.7
4,868,117	+		DZA65_RS22515	0.40	-2.3
4,868,117	+		DZA65_RS22515	0.40	-0.0
4,868,117	+		DZA65_RS22515	0.40	+0.1
4,868,118	-		DZA65_RS22515	0.40	-0.1
4,868,118	-		DZA65_RS22515	0.40	-0.3
4,868,118	-		DZA65_RS22515	0.40	-2.7
4,868,118	-		DZA65_RS22515	0.40	+0.5
4,868,118	-		DZA65_RS22515	0.40	+0.1
4,868,118	-		DZA65_RS22515	0.40	-1.1
4,868,137	+		DZA65_RS22515	0.42	+0.8
4,868,138	-		DZA65_RS22515	0.42	+0.4
4,868,138	-		DZA65_RS22515	0.42	-0.9
4,868,142	+		DZA65_RS22515	0.42	+1.5
4,868,142	+		DZA65_RS22515	0.42	-0.6
4,868,143	-		DZA65_RS22515	0.42	-1.6
4,868,143	-		DZA65_RS22515	0.42	-0.3
4,868,143	-		DZA65_RS22515	0.42	+1.7
4,868,143	-				+1.1
4,868,143	-		DZA65_RS22515	0.42	-0.3
4,868,143	-		DZA65_RS22515	0.42	+0.8
4,868,386	-		DZA65_RS22515	0.62	-1.6
4,868,429	+		DZA65_RS22515	0.65	-0.1
4,868,429	+		DZA65_RS22515	0.65	-1.1
4,868,429	+		DZA65_RS22515	0.65	-1.9
4,868,429	+		DZA65_RS22515	0.65	-1.8
4,868,429	+		DZA65_RS22515	0.65	-0.9
4,868,430	-		DZA65_RS22515	0.65	+1.2
4,868,430	-		DZA65_RS22515	0.65	+0.1
4,868,430	-		DZA65_RS22515	0.65	+0.6
4,868,430	-		DZA65_RS22515	0.65	-1.8
4,868,430	-		DZA65_RS22515	0.65	+0.1
4,868,433	-		DZA65_RS22515	0.66	-0.3
4,868,465	+		DZA65_RS22515	0.68	-1.0
4,868,465	+				-1.5
4,868,466	-		DZA65_RS22515	0.68	-0.6
4,868,514	+		DZA65_RS22515	0.72	-0.6
4,868,514	+		DZA65_RS22515	0.72	-1.7
4,868,514	+		DZA65_RS22515	0.72	-1.3
4,868,514	+		DZA65_RS22515	0.72	-0.1
4,868,515	-		DZA65_RS22515	0.72	+1.5
4,868,515	-		DZA65_RS22515	0.72	-1.5
4,868,515	-		DZA65_RS22515	0.72	+1.0
4,868,515	-		DZA65_RS22515	0.72	+0.4
4,868,515	-		DZA65_RS22515	0.72	-0.6
4,868,515	-		DZA65_RS22515	0.72	-1.1
4,868,516	+		DZA65_RS22515	0.72	+0.7
4,868,516	+		DZA65_RS22515	0.72	-0.1
4,868,516	+		DZA65_RS22515	0.72	+0.1
4,868,516	+		DZA65_RS22515	0.72	+0.1
4,868,516	+		DZA65_RS22515	0.72	-1.0
4,868,516	+		DZA65_RS22515	0.72	+0.3
4,868,517	-		DZA65_RS22515	0.72	+0.1
4,868,517	-		DZA65_RS22515	0.72	-0.4
4,868,517	-		DZA65_RS22515	0.72	-0.2
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