Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21210

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,580,551	+		DZA65_RS21205	0.54	-1.1
4,580,552	-		DZA65_RS21205	0.54	+0.7
4,580,552	-		DZA65_RS21205	0.54	-0.3
4,580,552	-		DZA65_RS21205	0.54	-0.9
4,580,552	-		DZA65_RS21205	0.54	+0.8
4,580,552	-		DZA65_RS21205	0.54	+0.7
4,580,715	+		DZA65_RS21205	0.66	-1.1
4,580,715	+		DZA65_RS21205	0.66	-1.3
4,580,752	+		DZA65_RS21205	0.68	-0.0
4,580,752	+		DZA65_RS21205	0.68	+1.4
4,580,752	+		DZA65_RS21205	0.68	-0.5
4,580,752	+		DZA65_RS21205	0.68	-1.6
4,580,752	+		DZA65_RS21205	0.68	-0.2
4,580,752	+		DZA65_RS21205	0.68	-0.3
4,580,753	-		DZA65_RS21205	0.68	+2.1
4,580,839	+		DZA65_RS21205	0.74	+0.4
4,580,848	+		DZA65_RS21205	0.75	-0.5
4,580,848	+		DZA65_RS21205	0.75	+0.7
4,580,848	+		DZA65_RS21205	0.75	-1.1
4,580,848	+		DZA65_RS21205	0.75	-1.3
4,580,848	+		DZA65_RS21205	0.75	-1.5
4,580,848	+		DZA65_RS21205	0.75	-1.6
4,580,848	+		DZA65_RS21205	0.75	+0.2
4,580,848	+		DZA65_RS21205	0.75	+0.1
4,580,849	-		DZA65_RS21205	0.75	+0.1
4,580,849	-		DZA65_RS21205	0.75	-0.3
4,580,849	-		DZA65_RS21205	0.75	-0.1
4,580,849	-		DZA65_RS21205	0.75	+0.1
4,580,849	-		DZA65_RS21205	0.75	+1.3
4,580,849	-		DZA65_RS21205	0.75	-1.1
4,580,849	-		DZA65_RS21205	0.75	+0.7
4,580,849	-		DZA65_RS21205	0.75	-0.3
4,580,849	-		DZA65_RS21205	0.75	+0.4
4,580,849	-		DZA65_RS21205	0.75	+0.2
4,580,849	-		DZA65_RS21205	0.75	-1.3
4,580,849	-		DZA65_RS21205	0.75	-1.7
4,580,849	-		DZA65_RS21205	0.75	-0.6
4,580,864	+		DZA65_RS21205	0.76	+1.2
4,580,894	+		DZA65_RS21205	0.78	+0.7
4,580,894	+		DZA65_RS21205	0.78	-2.8
4,580,894	+		DZA65_RS21205	0.78	-1.5
4,580,894	+		DZA65_RS21205	0.78	+0.4
4,580,894	+		DZA65_RS21205	0.78	+0.7
4,580,894	+		DZA65_RS21205	0.78	+1.7
4,580,894	+		DZA65_RS21205	0.78	-0.6
4,580,895	-		DZA65_RS21205	0.78	+0.1
4,580,895	-		DZA65_RS21205	0.78	-1.7
4,580,895	-		DZA65_RS21205	0.78	+1.7
4,580,895	-		DZA65_RS21205	0.78	-0.9
4,580,895	-		DZA65_RS21205	0.78	+1.1
4,580,895	-		DZA65_RS21205	0.78	-0.0
4,580,895	-				+0.7
4,580,902	+		DZA65_RS21205	0.79	-0.3
4,580,941	+		DZA65_RS21205	0.82	+1.7
4,580,941	+		DZA65_RS21205	0.82	+1.4
4,580,942	-		DZA65_RS21205	0.82	-0.1
4,580,942	-		DZA65_RS21205	0.82	+1.1
4,580,953	+		DZA65_RS21205	0.83	-1.5
4,581,041	+		DZA65_RS21205	0.89	-1.5
4,581,041	+		DZA65_RS21205	0.89	-0.9
4,581,041	+		DZA65_RS21205	0.89	-0.9
4,581,041	+		DZA65_RS21205	0.89	+1.7
4,581,041	+		DZA65_RS21205	0.89	+1.2
4,581,041	+		DZA65_RS21205	0.89	-0.6
4,581,041	+		DZA65_RS21205	0.89	-0.3
4,581,042	-		DZA65_RS21205	0.89	-0.3
4,581,042	-		DZA65_RS21205	0.89	+0.7
4,581,042	-		DZA65_RS21205	0.89	-1.0
4,581,043	+		DZA65_RS21205	0.89	+0.9
4,581,043	+		DZA65_RS21205	0.89	+0.3
4,581,043	+		DZA65_RS21205	0.89	-0.9
4,581,043	+		DZA65_RS21205	0.89	+0.7
4,581,043	+		DZA65_RS21205	0.89	-1.4
4,581,043	+		DZA65_RS21205	0.89	+0.7
4,581,044	-		DZA65_RS21205	0.89	-1.1
4,581,044	-		DZA65_RS21205	0.89	-0.9
4,581,044	-		DZA65_RS21205	0.89	-0.9
4,581,044	-		DZA65_RS21205	0.89	-0.3
4,581,044	-		DZA65_RS21205	0.89	+0.1
4,581,044	-		DZA65_RS21205	0.89	+1.7
4,581,044	-		DZA65_RS21205	0.89	+2.0
4,581,133	-				+0.5
4,581,185	+				-0.9
4,581,185	+				-0.6
4,581,186	-				-0.9
4,581,186	-				+0.7
4,581,186	-				-1.1
4,581,186	-				+0.3
4,581,186	-				+1.4
4,581,186	-				+0.6
4,581,186	-				-0.4
4,581,194	+				+1.0
4,581,194	+				+0.8
4,581,195	-				-0.3
4,581,195	-				-0.9
4,581,195	-				+0.1
4,581,195	-				-0.3
4,581,195	-				+1.1
4,581,196	+				+0.6
4,581,196	+				-1.1
4,581,196	+				+0.5
4,581,196	+				+0.3
4,581,196	+				-0.7
4,581,196	+				-0.9
4,581,196	+				+0.5
4,581,196	+				-0.9
4,581,196	+				-1.5
4,581,197	-				-1.1
4,581,197	-				-1.3
4,581,197	-				-0.8
4,581,197	-				+0.7
4,581,197	-				+0.7
4,581,197	-				-1.0
4,581,197	-				-1.9
4,581,243	+				-0.0
4,581,251	+				-0.2
4,581,251	+				+0.7
4,581,251	+				-1.3
4,581,252	-				+0.7
4,581,252	-				+1.7
4,581,252	-				-1.6
4,581,253	+				-0.3
4,581,254	-				+0.7
4,581,275	+				-0.9
4,581,275	+				-0.5
4,581,276	-				-0.7
4,581,276	-				+0.8
4,581,278	-				+1.3
4,581,360	-				-1.3
4,581,360	-				-0.3
4,581,360	-				-0.9
4,581,360	-				+0.5
4,581,371	-				-0.7
4,581,371	-				+1.1
4,581,388	+				+1.4
4,581,389	-				+0.7
4,581,389	-				+0.1
4,581,421	-				-0.1
4,581,485	+				-0.2
4,581,486	-				+1.9
4,581,486	-				-0.3
4,581,569	+				-1.1
4,581,569	+		DZA65_RS21210	0.11	-0.1
4,581,569	+		DZA65_RS21210	0.11	-0.6
4,581,638	+		DZA65_RS21210	0.20	-0.6
4,581,638	+		DZA65_RS21210	0.20	+0.1
4,581,638	+		DZA65_RS21210	0.20	-2.1
4,581,639	-		DZA65_RS21210	0.21	-1.3
4,581,639	-		DZA65_RS21210	0.21	-1.1
4,581,639	-		DZA65_RS21210	0.21	-1.5
4,581,639	-		DZA65_RS21210	0.21	-0.3
4,581,639	-		DZA65_RS21210	0.21	-0.1
4,581,659	+		DZA65_RS21210	0.23	-1.1
4,581,659	+		DZA65_RS21210	0.23	-0.1
4,581,659	+		DZA65_RS21210	0.23	+2.1
4,581,659	+		DZA65_RS21210	0.23	-0.9
4,581,659	+		DZA65_RS21210	0.23	+0.2
4,581,659	+		DZA65_RS21210	0.23	-0.1
4,581,659	+		DZA65_RS21210	0.23	+0.9
4,581,659	+		DZA65_RS21210	0.23	+1.7
4,581,660	-		DZA65_RS21210	0.23	-3.2
4,581,660	-		DZA65_RS21210	0.23	+2.7
4,581,660	-		DZA65_RS21210	0.23	+0.7
4,581,660	-		DZA65_RS21210	0.23	-0.6
4,581,660	-		DZA65_RS21210	0.23	-2.3
4,581,660	-		DZA65_RS21210	0.23	-0.3
4,581,660	-		DZA65_RS21210	0.23	-0.6
4,581,797	+		DZA65_RS21210	0.42	+0.4
4,581,797	+		DZA65_RS21210	0.42	+0.7
4,581,797	+		DZA65_RS21210	0.42	+1.1
4,581,798	-		DZA65_RS21210	0.42	-1.1
4,581,798	-		DZA65_RS21210	0.42	+0.7
4,581,955	-		DZA65_RS21210	0.63	-0.9
4,581,977	+		DZA65_RS21210	0.65	+0.7
4,581,990	+		DZA65_RS21210	0.67	-1.1
4,581,990	+		DZA65_RS21210	0.67	+1.8
4,581,990	+		DZA65_RS21210	0.67	-0.3
4,581,990	+		DZA65_RS21210	0.67	+1.4
4,581,990	+		DZA65_RS21210	0.67	-0.9
4,581,991	-		DZA65_RS21210	0.67	-1.7
4,581,991	-		DZA65_RS21210	0.67	-1.1
4,581,991	-		DZA65_RS21210	0.67	-1.5
4,582,009	-		DZA65_RS21210	0.70	-1.1
4,582,019	+		DZA65_RS21210	0.71	+0.1
4,582,019	+		DZA65_RS21210	0.71	-1.7
4,582,019	+		DZA65_RS21210	0.71	-0.5
4,582,019	+		DZA65_RS21210	0.71	-0.9
4,582,019	+		DZA65_RS21210	0.71	-0.1
4,582,019	+		DZA65_RS21210	0.71	-1.3
4,582,019	+				-1.7
4,582,019	+		DZA65_RS21210	0.71	-1.6
4,582,020	-		DZA65_RS21210	0.71	-0.9
4,582,020	-		DZA65_RS21210	0.71	-0.8
4,582,020	-		DZA65_RS21210	0.71	+0.1
4,582,020	-		DZA65_RS21210	0.71	-1.1
4,582,020	-		DZA65_RS21210	0.71	-0.1
4,582,020	-		DZA65_RS21210	0.71	-2.5
4,582,020	-		DZA65_RS21210	0.71	+2.2
4,582,020	-		DZA65_RS21210	0.71	-0.9
4,582,195	-				+0.1
4,582,199	+				-1.1
4,582,200	-				+0.8
4,582,209	+				-1.9
4,582,210	-				-0.2
4,582,297	+				-0.2
4,582,298	-				-0.1
4,582,298	-				+0.1
4,582,475	-		DZA65_RS21215	0.18	-0.3
4,582,597	+		DZA65_RS21215	0.27	+0.7
4,582,597	+		DZA65_RS21215	0.27	-2.0
4,582,597	+		DZA65_RS21215	0.27	-0.6
4,582,597	+		DZA65_RS21215	0.27	-2.6
4,582,597	+		DZA65_RS21215	0.27	+1.7
4,582,597	+		DZA65_RS21215	0.27	+0.7
4,582,597	+		DZA65_RS21215	0.27	+0.7
4,582,598	-		DZA65_RS21215	0.27	+0.3
4,582,598	-		DZA65_RS21215	0.27	+0.4
4,582,598	-		DZA65_RS21215	0.27	-2.1
4,582,598	-		DZA65_RS21215	0.27	+0.9
4,582,598	-		DZA65_RS21215	0.27	-0.3
4,582,598	-		DZA65_RS21215	0.27	-0.5
4,582,621	+		DZA65_RS21215	0.29	+0.9
4,582,621	+		DZA65_RS21215	0.29	-0.3
4,582,621	+		DZA65_RS21215	0.29	+1.7
4,582,621	+		DZA65_RS21215	0.29	+1.7
4,582,621	+		DZA65_RS21215	0.29	+0.0
4,582,621	+		DZA65_RS21215	0.29	-2.1
4,582,621	+		DZA65_RS21215	0.29	-1.6
4,582,622	-		DZA65_RS21215	0.29	+2.5
4,582,622	-		DZA65_RS21215	0.29	-2.9
4,582,622	-		DZA65_RS21215	0.29	-1.5
4,582,622	-		DZA65_RS21215	0.29	-0.4
4,582,622	-		DZA65_RS21215	0.29	-0.9
4,582,622	-		DZA65_RS21215	0.29	-1.6
4,582,622	-		DZA65_RS21215	0.29	+0.7
4,582,622	-		DZA65_RS21215	0.29	-1.6
4,582,622	-		DZA65_RS21215	0.29	+2.3
4,582,622	-		DZA65_RS21215	0.29	+0.6
4,582,634	+		DZA65_RS21215	0.30	-1.9
4,582,635	-		DZA65_RS21215	0.30	-2.4
4,582,676	+		DZA65_RS21215	0.33	-0.9
4,582,677	-		DZA65_RS21215	0.33	-1.0
4,582,677	-		DZA65_RS21215	0.33	+1.8
4,582,684	+		DZA65_RS21215	0.34	+0.3
4,582,685	-		DZA65_RS21215	0.34	+0.7
4,582,716	+		DZA65_RS21215	0.36	-1.3
4,582,716	+		DZA65_RS21215	0.36	-0.9
4,582,717	-		DZA65_RS21215	0.36	+0.7
4,582,717	-		DZA65_RS21215	0.36	-0.1
4,582,717	-		DZA65_RS21215	0.36	+0.5
4,582,722	+		DZA65_RS21215	0.36	-1.6
4,582,722	+		DZA65_RS21215	0.36	-2.0
4,582,722	+		DZA65_RS21215	0.36	-0.8
4,582,722	+		DZA65_RS21215	0.36	-1.6
4,582,723	-		DZA65_RS21215	0.37	+0.1
4,582,723	-		DZA65_RS21215	0.37	+0.9
4,582,723	-		DZA65_RS21215	0.37	+0.5
4,582,743	+		DZA65_RS21215	0.38	-1.5
4,582,743	+		DZA65_RS21215	0.38	+1.4
4,582,743	+		DZA65_RS21215	0.38	-1.3
4,582,743	+		DZA65_RS21215	0.38	-0.6
4,582,744	-		DZA65_RS21215	0.38	-2.2
4,582,776	-		DZA65_RS21215	0.40	-0.6
4,582,789	+		DZA65_RS21215	0.41	-1.1
4,582,789	+		DZA65_RS21215	0.41	-0.6
4,582,789	+		DZA65_RS21215	0.41	-1.0
4,582,789	+		DZA65_RS21215	0.41	+0.1
4,582,789	+		DZA65_RS21215	0.41	-0.9
4,582,789	+		DZA65_RS21215	0.41	-0.2
4,582,791	+		DZA65_RS21215	0.42	+0.2
4,582,791	+		DZA65_RS21215	0.42	-0.3
4,582,791	+		DZA65_RS21215	0.42	+0.1
4,582,791	+		DZA65_RS21215	0.42	-1.6
4,582,792	-		DZA65_RS21215	0.42	-1.1
4,582,801	+		DZA65_RS21215	0.42	+1.7
4,582,801	+		DZA65_RS21215	0.42	+0.3
4,582,801	+		DZA65_RS21215	0.42	-0.6
4,582,801	+		DZA65_RS21215	0.42	-1.6
4,582,802	-		DZA65_RS21215	0.42	-0.6
4,582,802	-		DZA65_RS21215	0.42	+1.5
4,582,802	-		DZA65_RS21215	0.42	-1.3
4,582,802	-		DZA65_RS21215	0.42	+0.4
4,582,802	-		DZA65_RS21215	0.42	-1.9
4,582,802	-		DZA65_RS21215	0.42	+0.6
4,582,802	-		DZA65_RS21215	0.42	-1.3
4,582,802	-		DZA65_RS21215	0.42	+0.9
4,582,802	-		DZA65_RS21215	0.42	-1.3
4,582,802	-		DZA65_RS21215	0.42	-1.6
4,582,802	-		DZA65_RS21215	0.42	+1.7
4,582,802	-		DZA65_RS21215	0.42	-1.5
4,582,802	-		DZA65_RS21215	0.42	-2.0
4,582,821	+		DZA65_RS21215	0.44	+0.1
4,582,821	+		DZA65_RS21215	0.44	+0.7
4,582,821	+		DZA65_RS21215	0.44	-0.2
4,582,821	+		DZA65_RS21215	0.44	+1.7
4,582,822	-		DZA65_RS21215	0.44	-0.4
4,582,822	-		DZA65_RS21215	0.44	+2.3
4,582,822	-		DZA65_RS21215	0.44	-1.2
4,582,822	-		DZA65_RS21215	0.44	-1.0
4,582,822	-		DZA65_RS21215	0.44	-0.1
4,582,822	-		DZA65_RS21215	0.44	-1.4
4,582,822	-		DZA65_RS21215	0.44	-0.3
4,582,822	-		DZA65_RS21215	0.44	-0.2
4,582,834	+		DZA65_RS21215	0.45	-0.9
4,582,835	-		DZA65_RS21215	0.45	-1.5
4,582,928	+		DZA65_RS21215	0.52	-1.0
4,582,929	-		DZA65_RS21215	0.52	-0.8
4,582,958	+		DZA65_RS21215	0.54	-1.1
4,582,958	+		DZA65_RS21215	0.54	-3.0
4,582,958	+		DZA65_RS21215	0.54	+2.0
4,582,958	+				+0.1
4,582,958	+		DZA65_RS21215	0.54	-1.5
4,582,959	-		DZA65_RS21215	0.54	-1.6
4,582,959	-		DZA65_RS21215	0.54	-1.1
4,582,959	-		DZA65_RS21215	0.54	-1.5
4,582,987	+		DZA65_RS21215	0.56	-0.3
4,582,987	+		DZA65_RS21215	0.56	+1.6
4,582,987	+		DZA65_RS21215	0.56	+0.4
4,582,988	-		DZA65_RS21215	0.56	-0.7
4,582,988	-		DZA65_RS21215	0.56	-0.3
4,582,988	-		DZA65_RS21215	0.56	-1.5
4,582,988	-		DZA65_RS21215	0.56	+0.2
4,583,059	+		DZA65_RS21215	0.62	+0.7
4,583,059	+		DZA65_RS21215	0.62	-1.1
4,583,059	+		DZA65_RS21215	0.62	-0.3
4,583,059	+		DZA65_RS21215	0.62	-0.6
4,583,059	+		DZA65_RS21215	0.62	+1.0
4,583,059	+		DZA65_RS21215	0.62	+2.7
4,583,059	+		DZA65_RS21215	0.62	-0.7
4,583,059	+		DZA65_RS21215	0.62	+2.0
4,583,060	-		DZA65_RS21215	0.62	-2.5
4,583,060	-		DZA65_RS21215	0.62	-0.3
4,583,060	-		DZA65_RS21215	0.62	+0.2
4,583,060	-		DZA65_RS21215	0.62	+0.9
4,583,089	+		DZA65_RS21215	0.64	+0.7
4,583,089	+		DZA65_RS21215	0.64	+1.0
4,583,089	+		DZA65_RS21215	0.64	-1.1
4,583,090	-				+0.1
4,583,144	-		DZA65_RS21215	0.68	-0.1
4,583,144	-		DZA65_RS21215	0.68	-1.3