Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19985

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,322,561	+		DZA65_RS19980	0.33	-0.6
4,322,561	+		DZA65_RS19980	0.33	-1.3
4,322,561	+		DZA65_RS19980	0.33	-1.8
4,322,561	+		DZA65_RS19980	0.33	+0.5
4,322,561	+		DZA65_RS19980	0.33	-1.3
4,322,561	+		DZA65_RS19980	0.33	-1.6
4,322,561	+		DZA65_RS19980	0.33	-1.1
4,322,561	+		DZA65_RS19980	0.33	+0.4
4,322,561	+		DZA65_RS19980	0.33	+0.2
4,322,561	+		DZA65_RS19980	0.33	+0.4
4,322,561	+		DZA65_RS19980	0.33	-1.1
4,322,561	+		DZA65_RS19980	0.33	-0.9
4,322,561	+		DZA65_RS19980	0.33	-0.3
4,322,561	+		DZA65_RS19980	0.33	+0.1
4,322,562	-		DZA65_RS19980	0.34	-0.6
4,322,562	-		DZA65_RS19980	0.34	-0.3
4,322,562	-		DZA65_RS19980	0.34	-1.4
4,322,562	-		DZA65_RS19980	0.34	+0.9
4,322,562	-		DZA65_RS19980	0.34	+0.0
4,322,562	-		DZA65_RS19980	0.34	+1.0
4,322,562	-		DZA65_RS19980	0.34	+0.8
4,322,562	-		DZA65_RS19980	0.34	-0.6
4,322,562	-		DZA65_RS19980	0.34	-0.1
4,322,562	-		DZA65_RS19980	0.34	+0.7
4,322,562	-		DZA65_RS19980	0.34	-0.9
4,322,562	-		DZA65_RS19980	0.34	-1.3
4,322,562	-		DZA65_RS19980	0.34	+0.1
4,322,562	-		DZA65_RS19980	0.34	+0.5
4,322,562	-				+1.5
4,322,562	-		DZA65_RS19980	0.34	-1.3
4,322,562	-				-1.6
4,322,562	-		DZA65_RS19980	0.34	+1.7
4,322,562	-		DZA65_RS19980	0.34	-0.8
4,322,562	-		DZA65_RS19980	0.34	-0.7
4,322,562	-		DZA65_RS19980	0.34	+0.7
4,322,562	-		DZA65_RS19980	0.34	-0.5
4,322,562	-		DZA65_RS19980	0.34	+0.1
4,322,562	-		DZA65_RS19980	0.34	-0.1
4,322,562	-		DZA65_RS19980	0.34	-1.3
4,322,562	-		DZA65_RS19980	0.34	-1.3
4,322,562	-		DZA65_RS19980	0.34	+0.3
4,322,562	-		DZA65_RS19980	0.34	-0.1
4,322,727	+		DZA65_RS19980	0.45	-0.9
4,322,728	-		DZA65_RS19980	0.46	+1.1
4,322,728	-		DZA65_RS19980	0.46	+1.7
4,322,728	-		DZA65_RS19980	0.46	+0.7
4,322,728	-		DZA65_RS19980	0.46	+0.8
4,322,914	+		DZA65_RS19980	0.59	+1.3
4,322,914	+		DZA65_RS19980	0.59	+1.7
4,322,915	-		DZA65_RS19980	0.59	+0.9
4,322,915	-		DZA65_RS19980	0.59	-1.3
4,322,924	+		DZA65_RS19980	0.60	-1.3
4,322,925	-		DZA65_RS19980	0.60	-2.1
4,322,925	-		DZA65_RS19980	0.60	+2.1
4,323,067	+		DZA65_RS19980	0.70	-0.5
4,323,108	-		DZA65_RS19980	0.73	-0.5
4,323,108	-		DZA65_RS19980	0.73	-0.1
4,323,333	+		DZA65_RS19980	0.89	-1.5
4,323,333	+		DZA65_RS19980	0.89	-0.1
4,323,334	-		DZA65_RS19980	0.89	-0.5
4,323,434	+				+0.5
4,323,434	+				-1.1
4,323,434	+				+0.8
4,323,644	+		DZA65_RS19985	0.11	-0.2
4,323,644	+		DZA65_RS19985	0.11	-0.3
4,323,644	+		DZA65_RS19985	0.11	+0.3
4,323,644	+		DZA65_RS19985	0.11	-0.6
4,323,645	-		DZA65_RS19985	0.11	-0.3
4,323,645	-		DZA65_RS19985	0.11	-0.3
4,323,653	+		DZA65_RS19985	0.12	+0.9
4,323,653	+		DZA65_RS19985	0.12	-0.5
4,323,653	+		DZA65_RS19985	0.12	+1.3
4,323,653	+		DZA65_RS19985	0.12	-0.9
4,323,653	+		DZA65_RS19985	0.12	+1.3
4,323,653	+		DZA65_RS19985	0.12	-0.6
4,323,653	+		DZA65_RS19985	0.12	+0.3
4,323,653	+		DZA65_RS19985	0.12	-0.7
4,323,654	-		DZA65_RS19985	0.12	-0.8
4,323,654	-		DZA65_RS19985	0.12	+0.5
4,323,654	-		DZA65_RS19985	0.12	+0.5
4,323,654	-		DZA65_RS19985	0.12	-0.1
4,323,654	-		DZA65_RS19985	0.12	+1.0
4,323,654	-		DZA65_RS19985	0.12	+1.5
4,323,654	-		DZA65_RS19985	0.12	-1.6
4,323,654	-		DZA65_RS19985	0.12	-1.2
4,323,693	-		DZA65_RS19985	0.15	-1.0
4,323,699	-		DZA65_RS19985	0.15	-0.3
4,323,699	-		DZA65_RS19985	0.15	-0.3
4,323,699	-		DZA65_RS19985	0.15	-0.9
4,323,878	+		DZA65_RS19985	0.28	+1.4
4,323,878	+		DZA65_RS19985	0.28	-1.1
4,323,878	+		DZA65_RS19985	0.28	-1.6
4,323,878	+		DZA65_RS19985	0.28	-1.9
4,323,878	+		DZA65_RS19985	0.28	-2.2
4,323,879	-		DZA65_RS19985	0.28	-0.1
4,323,879	-		DZA65_RS19985	0.28	-0.1
4,323,879	-		DZA65_RS19985	0.28	-2.5
4,323,901	+		DZA65_RS19985	0.30	-1.6
4,324,043	+		DZA65_RS19985	0.40	-1.9
4,324,305	+		DZA65_RS19985	0.59	-0.3
4,324,306	-		DZA65_RS19985	0.59	+1.9
4,324,306	-		DZA65_RS19985	0.59	-1.3
4,324,357	+		DZA65_RS19985	0.63	+0.1
4,324,357	+		DZA65_RS19985	0.63	+0.5
4,324,358	-		DZA65_RS19985	0.63	+0.7
4,324,358	-		DZA65_RS19985	0.63	-0.9
4,324,358	-		DZA65_RS19985	0.63	-0.1
4,324,358	-		DZA65_RS19985	0.63	-0.9
4,324,358	-		DZA65_RS19985	0.63	-1.1
4,324,397	+		DZA65_RS19985	0.66	-0.8
4,324,397	+		DZA65_RS19985	0.66	+0.0
4,324,505	+		DZA65_RS19985	0.74	-1.1
4,324,505	+		DZA65_RS19985	0.74	+1.4
4,324,505	+		DZA65_RS19985	0.74	-0.9
4,324,505	+		DZA65_RS19985	0.74	-0.6
4,324,505	+		DZA65_RS19985	0.74	+0.2
4,324,505	+		DZA65_RS19985	0.74	-1.9
4,324,506	-		DZA65_RS19985	0.74	+0.4
4,324,506	-		DZA65_RS19985	0.74	-1.6
4,324,506	-		DZA65_RS19985	0.74	-0.6
4,324,506	-		DZA65_RS19985	0.74	-2.4
4,324,509	+		DZA65_RS19985	0.74	+1.7
4,324,509	+		DZA65_RS19985	0.74	+0.1
4,324,509	+		DZA65_RS19985	0.74	-0.5
4,324,510	-		DZA65_RS19985	0.74	-0.6
4,324,510	-		DZA65_RS19985	0.74	-1.3
4,324,510	-		DZA65_RS19985	0.74	+1.7
4,324,542	+		DZA65_RS19985	0.76	-1.8
4,324,543	-		DZA65_RS19985	0.76	-0.3
4,324,735	+				+0.4
4,324,938	-				+1.4
4,325,035	+				-1.8
4,325,035	+				+2.5
4,325,035	+				+2.5
4,325,036	-				+0.7
4,325,036	-				-0.2
4,325,036	-				+0.2
4,325,036	-				+0.2
4,325,036	-				-1.7
4,325,036	-				+0.1
4,325,047	+				-0.5
4,325,047	+				+2.2
4,325,047	+				+2.0
4,325,047	+				+1.8
4,325,047	+				+1.2
4,325,047	+				-0.9
4,325,048	-				-0.6
4,325,048	-				-0.2
4,325,048	-				-1.3
4,325,048	-				+0.5
4,325,048	-				-0.9
4,325,048	-				+0.1
4,325,048	-				-0.8
4,325,048	-				-0.4
4,325,056	+				+1.0
4,325,056	+				+0.4
4,325,056	+				+1.1
4,325,056	+				-0.0
4,325,057	-				+0.1
4,325,057	-				-0.7
4,325,057	-				-1.3
4,325,057	-				+3.3
4,325,057	-				-1.1
4,325,062	+				-0.6
4,325,062	+				-0.9
4,325,062	+				-1.3
4,325,063	-				-1.3
4,325,063	-				+1.7
4,325,063	-				+0.5
4,325,065	+				-0.4
4,325,066	-				-1.6
4,325,088	+				-0.6
4,325,088	+				+0.1
4,325,088	+				+1.7
4,325,089	-				-1.3
4,325,089	-				-2.5
4,325,090	+				-0.1
4,325,090	+				+1.3
4,325,090	+				+1.9
4,325,090	+				+0.6
4,325,090	+				+1.4
4,325,091	-				+0.0
4,325,091	-				+0.5
4,325,091	-				+0.8
4,325,099	+				+0.8
4,325,099	+				-0.6
4,325,099	+				-1.9
4,325,099	+				-1.0
4,325,100	-				-1.3
4,325,100	-				+2.0
4,325,104	-				-0.3
4,325,104	-				-0.6
4,325,112	+				-2.6
4,325,112	+				+1.7
4,325,112	+				-0.0
4,325,112	+				-1.4
4,325,112	+				+1.0
4,325,112	+				+1.1
4,325,112	+				+1.5
4,325,112	+				+0.8
4,325,112	+				-1.8
4,325,112	+				+2.6
4,325,112	+				+2.7
4,325,112	+				-0.3
4,325,112	+				-1.3
4,325,112	+				-0.6
4,325,112	+				+0.1
4,325,112	+				+0.1
4,325,112	+				+0.4
4,325,112	+				+0.4
4,325,112	+				-1.2
4,325,112	+				-0.3
4,325,112	+				-0.3
4,325,113	-				-0.2
4,325,113	-				-0.3
4,325,113	-				-0.9
4,325,113	-				-1.1
4,325,113	-				-2.6
4,325,113	-				+0.7
4,325,113	-				-0.3
4,325,113	-				-0.3
4,325,113	-				+1.8
4,325,113	-				-2.6
4,325,113	-				+2.3
4,325,113	-				+0.3
4,325,113	-				+0.9
4,325,113	-				+0.4
4,325,113	-				+2.0
4,325,113	-				+1.3
4,325,113	-				-0.7
4,325,113	-				-1.3
4,325,113	-				-0.6
4,325,113	-				-1.1
4,325,113	-				+0.2
4,325,113	-				+0.7
4,325,113	-				-1.2
4,325,113	-				-0.1
4,325,113	-				-0.1
4,325,113	-				-0.9
4,325,117	+				+0.7
4,325,117	+				-1.0
4,325,117	+				-2.1
4,325,117	+				-1.8
4,325,118	-				-0.6
4,325,118	-				+0.3
4,325,118	-				-0.1
4,325,130	-				+0.1
4,325,169	+				-2.1
4,325,198	-				-0.1
4,325,216	+				-0.9
4,325,231	+				-1.9
4,325,254	-				-1.6
4,325,261	+				+0.7
4,325,262	-				-0.3
4,325,262	-				-1.3
4,325,276	+				-0.6
4,325,276	+				+1.3
4,325,283	+				-2.5
4,325,284	-				-0.6
4,325,284	-				-0.6
4,325,302	+				+0.1
4,325,302	+				-0.1
4,325,303	-				-0.6
4,325,303	-				+0.4
4,325,303	-				-1.6
4,325,364	+				+0.1
4,325,365	-				+0.7
4,325,375	-		DZA65_RS19990	0.10	-1.8
4,325,383	+		DZA65_RS19990	0.11	-0.7
4,325,491	+		DZA65_RS19990	0.18	-1.3
4,325,491	+		DZA65_RS19990	0.18	-0.3
4,325,492	-		DZA65_RS19990	0.18	+0.7
4,325,492	-		DZA65_RS19990	0.18	+0.4
4,325,492	-		DZA65_RS19990	0.18	+3.3
4,325,492	-		DZA65_RS19990	0.18	+1.4
4,325,492	-		DZA65_RS19990	0.18	+0.7
4,325,492	-		DZA65_RS19990	0.18	-1.5
4,325,493	+		DZA65_RS19990	0.18	+0.1
4,325,493	+		DZA65_RS19990	0.18	+0.1
4,325,493	+		DZA65_RS19990	0.18	-2.1
4,325,493	+		DZA65_RS19990	0.18	-0.9
4,325,493	+		DZA65_RS19990	0.18	-2.0
4,325,494	-		DZA65_RS19990	0.18	+0.1
4,325,494	-		DZA65_RS19990	0.18	-1.0
4,325,514	+		DZA65_RS19990	0.19	-0.3
4,325,532	+		DZA65_RS19990	0.20	+0.1
4,325,533	-		DZA65_RS19990	0.20	-0.6
4,325,533	-		DZA65_RS19990	0.20	+1.5
4,325,545	-		DZA65_RS19990	0.21	-1.5
4,325,545	-		DZA65_RS19990	0.21	-1.8
4,325,545	-				-0.3
4,325,596	+		DZA65_RS19990	0.24	-1.1
4,325,596	+		DZA65_RS19990	0.24	-1.7
4,325,596	+		DZA65_RS19990	0.24	-1.5
4,325,596	+		DZA65_RS19990	0.24	+0.1
4,325,596	+		DZA65_RS19990	0.24	-1.1
4,325,596	+		DZA65_RS19990	0.24	+0.1
4,325,596	+		DZA65_RS19990	0.24	+0.7
4,325,597	-		DZA65_RS19990	0.24	-0.6
4,325,597	-		DZA65_RS19990	0.24	+0.7
4,325,646	+		DZA65_RS19990	0.27	-1.8
4,325,647	-		DZA65_RS19990	0.27	-2.8
4,325,647	-		DZA65_RS19990	0.27	-1.0
4,325,647	-		DZA65_RS19990	0.27	+0.5
4,325,647	-		DZA65_RS19990	0.27	+0.8
4,325,659	+		DZA65_RS19990	0.28	-0.3
4,325,659	+		DZA65_RS19990	0.28	-0.1
4,325,659	+		DZA65_RS19990	0.28	-0.1
4,325,660	-		DZA65_RS19990	0.28	+0.5
4,325,660	-		DZA65_RS19990	0.28	-1.4
4,325,779	+		DZA65_RS19990	0.36	-0.9
4,325,779	+		DZA65_RS19990	0.36	-1.5
4,325,779	+		DZA65_RS19990	0.36	-1.5
4,325,779	+		DZA65_RS19990	0.36	+0.3
4,325,779	+				+0.7
4,325,780	-		DZA65_RS19990	0.36	+0.7
4,325,780	-		DZA65_RS19990	0.36	+2.9
4,325,793	-		DZA65_RS19990	0.36	+1.5
4,325,793	-		DZA65_RS19990	0.36	+1.2
4,325,860	-		DZA65_RS19990	0.41	+0.9