Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19720

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,269,675	+				-0.9
4,269,689	-				-0.5
4,269,737	+				-0.1
4,269,796	+				+1.1
4,269,822	+				-1.0
4,269,822	+				-0.3
4,269,822	+				+3.2
4,269,823	-				-0.7
4,269,958	+				-0.3
4,269,958	+				+1.5
4,269,959	-				-0.8
4,269,959	-				-2.0
4,269,962	+				-0.3
4,269,963	-				+0.3
4,269,963	-				-0.5
4,270,006	+				+0.7
4,270,011	+				+0.1
4,270,011	+				+0.2
4,270,012	-				+0.9
4,270,037	-				+1.7
4,270,064	+				+0.8
4,270,084	+				-0.9
4,270,085	-				-0.1
4,270,085	-				+1.1
4,270,085	-				-1.5
4,270,151	+				+0.6
4,270,245	-				+0.2
4,270,245	-				-0.3
4,270,245	-				+0.4
4,270,245	-				+0.1
4,270,245	-				+2.1
4,270,245	-				+0.7
4,270,249	+				-0.4
4,270,249	+				+0.0
4,270,249	+				+0.7
4,270,249	+				+0.5
4,270,249	+				-2.0
4,270,249	+				+0.3
4,270,250	-				-1.3
4,270,250	-				+0.8
4,270,250	-				+0.1
4,270,250	-				-1.3
4,270,250	-				+0.5
4,270,250	-				+0.2
4,270,250	-				+0.4
4,270,254	+				-0.3
4,270,254	+				-0.5
4,270,254	+				-1.3
4,270,255	-				+0.5
4,270,255	-				+0.1
4,270,359	-				-0.6
4,270,366	+				-1.3
4,270,366	+				+0.4
4,270,366	+				+0.8
4,270,367	-				+1.3
4,270,367	-				+1.7
4,270,367	-				+0.7
4,270,367	-				-0.2
4,270,387	+				+1.3
4,270,387	+				-0.3
4,270,387	+				+0.7
4,270,388	-				-0.3
4,270,394	+				+0.7
4,270,394	+				-1.1
4,270,394	+				+0.4
4,270,394	+				-0.9
4,270,395	-				+0.1
4,270,395	-				-0.2
4,270,398	+				-1.1
4,270,398	+				+0.9
4,270,399	-				-2.1
4,270,407	+				-0.3
4,270,408	-				-2.2
4,270,408	-				+2.4
4,270,408	-				+1.1
4,270,435	+				-1.2
4,270,436	-				-0.6
4,270,440	-				-1.6
4,270,501	-				-1.0
4,270,501	-				-1.6
4,270,503	+				+0.8
4,270,547	-				-1.7
4,270,556	+				+0.1
4,270,559	+				-0.8
4,270,559	+				-0.9
4,270,559	+				-0.3
4,270,560	-				-1.1
4,270,569	+				-1.3
4,270,595	-				-1.3
4,270,601	-				-1.2
4,270,777	+		DZA65_RS19720	0.15	-0.5
4,270,795	+		DZA65_RS19720	0.16	-1.9
4,270,795	+		DZA65_RS19720	0.16	-1.0
4,270,795	+		DZA65_RS19720	0.16	+0.1
4,270,795	+		DZA65_RS19720	0.16	-0.4
4,270,796	-		DZA65_RS19720	0.17	-0.9
4,270,796	-		DZA65_RS19720	0.17	-2.2
4,270,796	-		DZA65_RS19720	0.17	+0.2
4,270,862	-		DZA65_RS19720	0.21	-0.2
4,270,918	+		DZA65_RS19720	0.25	-1.4
4,270,959	-		DZA65_RS19720	0.28	-1.2
4,271,026	+		DZA65_RS19720	0.33	-0.6
4,271,026	+		DZA65_RS19720	0.33	-2.6
4,271,026	+		DZA65_RS19720	0.33	+0.4
4,271,027	-		DZA65_RS19720	0.33	-0.1
4,271,027	-		DZA65_RS19720	0.33	+0.1
4,271,120	+		DZA65_RS19720	0.40	-1.1
4,271,120	+		DZA65_RS19720	0.40	+0.8
4,271,155	+		DZA65_RS19720	0.42	-1.6
4,271,155	+		DZA65_RS19720	0.42	+1.7
4,271,156	-		DZA65_RS19720	0.42	-1.6
4,271,156	-		DZA65_RS19720	0.42	+0.7
4,271,156	-		DZA65_RS19720	0.42	-1.5
4,271,156	-		DZA65_RS19720	0.42	-0.6
4,271,184	+		DZA65_RS19720	0.44	-1.3
4,271,184	+		DZA65_RS19720	0.44	-0.6
4,271,232	+		DZA65_RS19720	0.48	-0.9
4,271,233	-		DZA65_RS19720	0.48	-1.9
4,271,233	-		DZA65_RS19720	0.48	-1.6
4,271,233	-		DZA65_RS19720	0.48	-1.1
4,271,233	-		DZA65_RS19720	0.48	+0.1
4,271,233	-		DZA65_RS19720	0.48	-1.5
4,271,236	+		DZA65_RS19720	0.48	-1.5
4,271,236	+		DZA65_RS19720	0.48	-0.5
4,271,236	+		DZA65_RS19720	0.48	-3.1
4,271,236	+		DZA65_RS19720	0.48	-1.8
4,271,236	+		DZA65_RS19720	0.48	+0.9
4,271,236	+		DZA65_RS19720	0.48	-0.6
4,271,236	+		DZA65_RS19720	0.48	-1.4
4,271,237	-		DZA65_RS19720	0.48	-3.0
4,271,267	-		DZA65_RS19720	0.50	-0.9
4,271,267	-		DZA65_RS19720	0.50	-0.6
4,271,293	+		DZA65_RS19720	0.52	-0.6
4,271,294	-		DZA65_RS19720	0.52	-3.1
4,271,318	+		DZA65_RS19720	0.54	-0.9
4,271,318	+		DZA65_RS19720	0.54	-1.3
4,271,416	+		DZA65_RS19720	0.61	-3.4
4,271,470	+		DZA65_RS19720	0.65	-1.2
4,271,470	+		DZA65_RS19720	0.65	+1.3
4,271,471	-		DZA65_RS19720	0.65	-3.2
4,271,471	-		DZA65_RS19720	0.65	-0.3
4,271,471	-		DZA65_RS19720	0.65	+0.1
4,271,471	-		DZA65_RS19720	0.65	-2.5
4,271,477	+		DZA65_RS19720	0.65	-0.5
4,271,477	+		DZA65_RS19720	0.65	-0.6
4,271,477	+		DZA65_RS19720	0.65	+0.5
4,271,477	+		DZA65_RS19720	0.65	-1.2
4,271,477	+		DZA65_RS19720	0.65	-0.9
4,271,477	+		DZA65_RS19720	0.65	-1.1
4,271,477	+		DZA65_RS19720	0.65	-1.8
4,271,477	+		DZA65_RS19720	0.65	-1.6
4,271,477	+		DZA65_RS19720	0.65	-1.1
4,271,478	-		DZA65_RS19720	0.65	+0.1
4,271,478	-		DZA65_RS19720	0.65	-2.6
4,271,478	-		DZA65_RS19720	0.65	-0.6
4,271,478	-		DZA65_RS19720	0.65	-1.1
4,271,478	-		DZA65_RS19720	0.65	-1.1
4,271,478	-		DZA65_RS19720	0.65	-2.2
4,271,479	+		DZA65_RS19720	0.65	-1.6
4,271,479	+		DZA65_RS19720	0.65	-0.3
4,271,479	+		DZA65_RS19720	0.65	-1.1
4,271,479	+		DZA65_RS19720	0.65	-2.4
4,271,480	-		DZA65_RS19720	0.65	-2.1
4,271,480	-		DZA65_RS19720	0.65	-1.8
4,271,480	-		DZA65_RS19720	0.65	-0.6
4,271,480	-		DZA65_RS19720	0.65	+0.3
4,271,521	+		DZA65_RS19720	0.68	-2.3
4,271,522	-		DZA65_RS19720	0.68	+0.1
4,271,529	+		DZA65_RS19720	0.69	-0.3
4,271,530	-		DZA65_RS19720	0.69	-1.0
4,271,535	+		DZA65_RS19720	0.69	+1.3
4,271,535	+		DZA65_RS19720	0.69	-0.5
4,271,536	-		DZA65_RS19720	0.69	+0.1
4,271,586	+		DZA65_RS19720	0.73	-0.3
4,271,587	-		DZA65_RS19720	0.73	+0.9
4,271,651	+		DZA65_RS19720	0.78	+1.7
4,271,652	-		DZA65_RS19720	0.78	-1.7
4,271,682	+		DZA65_RS19720	0.80	-0.3
4,271,682	+		DZA65_RS19720	0.80	-0.9
4,271,682	+		DZA65_RS19720	0.80	-2.8
4,271,682	+		DZA65_RS19720	0.80	-2.4
4,271,683	-		DZA65_RS19720	0.80	-0.7
4,271,683	-		DZA65_RS19720	0.80	-2.4
4,271,698	+		DZA65_RS19720	0.81	-2.4
4,271,698	+		DZA65_RS19720	0.81	-0.2
4,271,698	+		DZA65_RS19720	0.81	-1.3
4,271,698	+		DZA65_RS19720	0.81	+0.2
4,271,698	+		DZA65_RS19720	0.81	-1.9
4,271,698	+		DZA65_RS19720	0.81	-2.0
4,271,699	-		DZA65_RS19720	0.81	+0.2
4,271,699	-		DZA65_RS19720	0.81	-2.0
4,271,699	-		DZA65_RS19720	0.81	-1.3
4,271,699	-		DZA65_RS19720	0.81	-1.0
4,271,699	-		DZA65_RS19720	0.81	-0.4
4,271,713	+		DZA65_RS19720	0.82	-0.7
4,271,714	-		DZA65_RS19720	0.82	-0.4
4,271,718	+		DZA65_RS19720	0.82	-0.9
4,271,753	+		DZA65_RS19720	0.85	+1.7
4,271,753	+		DZA65_RS19720	0.85	-1.3
4,271,753	+		DZA65_RS19720	0.85	-0.3
4,271,753	+		DZA65_RS19720	0.85	+1.1
4,271,754	-		DZA65_RS19720	0.85	-2.6
4,271,754	-		DZA65_RS19720	0.85	-0.9
4,271,803	+		DZA65_RS19720	0.89	-0.9
4,271,803	+		DZA65_RS19720	0.89	-2.7
4,271,804	-		DZA65_RS19720	0.89	-0.9
4,271,804	-		DZA65_RS19720	0.89	-1.6
4,271,824	-				-1.5
4,271,824	-				-0.9
4,271,864	-				-2.8
4,271,869	+				+0.4
4,271,869	+				-1.3
4,271,869	+				-0.5
4,271,869	+				-1.6
4,271,869	+				-0.6
4,271,869	+				-2.0
4,271,869	+				+1.7
4,271,870	-				-1.1
4,271,870	-				-0.1
4,271,870	-				-2.9
4,271,870	-				-0.5
4,271,870	-				-0.9
4,271,927	+				+0.1
4,271,927	+				-0.0
4,271,948	-				-1.3
4,271,964	-				-2.0
4,271,984	+				+0.7
4,271,984	+				-2.9
4,271,984	+				+0.5
4,271,985	-				-2.2
4,271,985	-				-1.7
4,271,986	+				-1.7
4,271,986	+				-2.6
4,271,986	+				+0.4
4,271,986	+				-1.6
4,271,986	+				-1.9
4,271,986	+				-1.0
4,271,986	+				-0.3
4,271,986	+				-1.8
4,271,986	+				-0.9
4,271,986	+				-0.7
4,271,986	+				-1.1
4,271,986	+				-1.8
4,271,986	+				-3.2
4,271,986	+				-0.9
4,271,986	+				-0.4
4,271,986	+				-0.5
4,271,986	+				+0.4
4,271,987	-				-0.9
4,271,987	-				-2.1
4,271,987	-				-0.2
4,271,987	-				+0.3
4,271,987	-				+1.7
4,271,987	-				+0.9
4,271,987	-				-1.5
4,271,987	-				+1.3
4,271,987	-				+0.7
4,271,987	-				-1.5
4,271,987	-				-1.1
4,272,109	-				-3.3
4,272,109	-				-1.5
4,272,114	+				-3.8
4,272,114	+				-2.3
4,272,114	+				-0.1
4,272,114	+				-0.3
4,272,201	+		DZA65_RS19725	0.16	-0.3
4,272,201	+		DZA65_RS19725	0.16	+0.7
4,272,201	+		DZA65_RS19725	0.16	-2.9
4,272,201	+		DZA65_RS19725	0.16	+0.1
4,272,201	+		DZA65_RS19725	0.16	+0.0
4,272,201	+		DZA65_RS19725	0.16	+0.4
4,272,202	-		DZA65_RS19725	0.16	-0.3
4,272,202	-		DZA65_RS19725	0.16	-1.5
4,272,202	-		DZA65_RS19725	0.16	-0.8
4,272,207	+		DZA65_RS19725	0.16	-0.7
4,272,207	+		DZA65_RS19725	0.16	-3.9
4,272,207	+		DZA65_RS19725	0.16	-1.7
4,272,207	+		DZA65_RS19725	0.16	-0.7
4,272,208	-		DZA65_RS19725	0.16	-0.9
4,272,208	-		DZA65_RS19725	0.16	-0.3
4,272,208	-		DZA65_RS19725	0.16	+1.7
4,272,208	-		DZA65_RS19725	0.16	-1.5
4,272,227	+		DZA65_RS19725	0.17	-1.1
4,272,227	+		DZA65_RS19725	0.17	-1.2
4,272,227	+		DZA65_RS19725	0.17	+0.7
4,272,228	-		DZA65_RS19725	0.18	-1.3
4,272,228	-		DZA65_RS19725	0.18	-1.3
4,272,228	-		DZA65_RS19725	0.18	-1.5
4,272,228	-		DZA65_RS19725	0.18	-0.4
4,272,296	+		DZA65_RS19725	0.22	-0.3
4,272,354	+		DZA65_RS19725	0.27	+0.1
4,272,361	+		DZA65_RS19725	0.27	-0.7
4,272,362	-		DZA65_RS19725	0.27	+1.2
4,272,362	-		DZA65_RS19725	0.27	-0.1
4,272,385	+		DZA65_RS19725	0.29	-1.0
4,272,385	+		DZA65_RS19725	0.29	-2.0
4,272,386	-		DZA65_RS19725	0.29	-0.7
4,272,422	+		DZA65_RS19725	0.32	+0.3
4,272,422	+		DZA65_RS19725	0.32	+0.7
4,272,422	+		DZA65_RS19725	0.32	-0.7
4,272,422	+		DZA65_RS19725	0.32	-1.8
4,272,422	+		DZA65_RS19725	0.32	-0.3
4,272,422	+		DZA65_RS19725	0.32	-0.5
4,272,423	-		DZA65_RS19725	0.32	-0.4
4,272,424	+		DZA65_RS19725	0.32	-2.3
4,272,425	-		DZA65_RS19725	0.32	-1.1
4,272,425	-		DZA65_RS19725	0.32	-2.6
4,272,438	+		DZA65_RS19725	0.33	-1.8
4,272,438	+		DZA65_RS19725	0.33	-2.1
4,272,438	+		DZA65_RS19725	0.33	+0.7
4,272,438	+		DZA65_RS19725	0.33	+0.3
4,272,439	-		DZA65_RS19725	0.33	-1.7
4,272,439	-		DZA65_RS19725	0.33	-0.1
4,272,439	-		DZA65_RS19725	0.33	-1.3
4,272,439	-		DZA65_RS19725	0.33	-0.8
4,272,439	-		DZA65_RS19725	0.33	-2.0
4,272,439	-		DZA65_RS19725	0.33	-0.8
4,272,439	-		DZA65_RS19725	0.33	-0.7
4,272,449	+		DZA65_RS19725	0.34	-1.7
4,272,449	+		DZA65_RS19725	0.34	-0.3
4,272,450	-		DZA65_RS19725	0.34	+0.7
4,272,450	-		DZA65_RS19725	0.34	-2.4
4,272,450	-		DZA65_RS19725	0.34	-0.2
4,272,462	+		DZA65_RS19725	0.35	-0.5
4,272,462	+		DZA65_RS19725	0.35	-1.3
4,272,462	+		DZA65_RS19725	0.35	-0.9
4,272,462	+		DZA65_RS19725	0.35	-1.8
4,272,462	+		DZA65_RS19725	0.35	-0.8
4,272,462	+		DZA65_RS19725	0.35	-1.9
4,272,462	+		DZA65_RS19725	0.35	-0.3
4,272,462	+		DZA65_RS19725	0.35	-2.0
4,272,462	+		DZA65_RS19725	0.35	-0.7
4,272,462	+		DZA65_RS19725	0.35	+1.1
4,272,462	+		DZA65_RS19725	0.35	+1.2
4,272,462	+		DZA65_RS19725	0.35	-0.3
4,272,462	+		DZA65_RS19725	0.35	-1.4
4,272,463	-		DZA65_RS19725	0.35	-2.3
4,272,463	-		DZA65_RS19725	0.35	-1.3
4,272,463	-		DZA65_RS19725	0.35	-2.0
4,272,463	-		DZA65_RS19725	0.35	-1.5
4,272,463	-		DZA65_RS19725	0.35	-1.3
4,272,463	-		DZA65_RS19725	0.35	-0.3
4,272,463	-		DZA65_RS19725	0.35	-0.7
4,272,463	-		DZA65_RS19725	0.35	-1.5
4,272,463	-		DZA65_RS19725	0.35	-1.3
4,272,463	-		DZA65_RS19725	0.35	-1.1
4,272,463	-		DZA65_RS19725	0.35	-0.2
4,272,463	-		DZA65_RS19725	0.35	-0.7
4,272,470	+		DZA65_RS19725	0.35	-1.3
4,272,470	+		DZA65_RS19725	0.35	-2.1
4,272,470	+		DZA65_RS19725	0.35	-2.0
4,272,470	+		DZA65_RS19725	0.35	-1.1
4,272,470	+		DZA65_RS19725	0.35	+1.9
4,272,470	+		DZA65_RS19725	0.35	-1.4
4,272,470	+		DZA65_RS19725	0.35	-1.6
4,272,470	+				+0.1
4,272,470	+		DZA65_RS19725	0.35	+0.9
4,272,470	+		DZA65_RS19725	0.35	+0.7
4,272,470	+		DZA65_RS19725	0.35	-2.0
4,272,470	+		DZA65_RS19725	0.35	-0.7
4,272,470	+		DZA65_RS19725	0.35	-1.3
4,272,471	-		DZA65_RS19725	0.35	-1.8
4,272,471	-		DZA65_RS19725	0.35	-0.7
4,272,471	-		DZA65_RS19725	0.35	-1.3
4,272,471	-		DZA65_RS19725	0.35	-1.1
4,272,596	-		DZA65_RS19725	0.44	-1.7
4,272,603	+		DZA65_RS19725	0.45	+0.1
4,272,603	+		DZA65_RS19725	0.45	-1.2
4,272,603	+		DZA65_RS19725	0.45	-0.3
4,272,603	+		DZA65_RS19725	0.45	-1.3
4,272,603	+		DZA65_RS19725	0.45	-1.7
4,272,604	-		DZA65_RS19725	0.45	-0.9
4,272,604	-		DZA65_RS19725	0.45	-1.9
4,272,604	-		DZA65_RS19725	0.45	-0.9
4,272,604	-		DZA65_RS19725	0.45	+1.1
4,272,604	-		DZA65_RS19725	0.45	-1.1
4,272,604	-		DZA65_RS19725	0.45	-2.0
4,272,673	+		DZA65_RS19725	0.50	-0.7
4,272,673	+		DZA65_RS19725	0.50	-0.9
4,272,673	+		DZA65_RS19725	0.50	+2.4
4,272,674	-		DZA65_RS19725	0.50	-1.7
4,272,674	-		DZA65_RS19725	0.50	-0.8
4,272,674	-		DZA65_RS19725	0.50	+1.3
4,272,674	-		DZA65_RS19725	0.50	-0.6
4,272,674	-		DZA65_RS19725	0.50	-2.0
4,272,674	-		DZA65_RS19725	0.50	-0.9
4,272,674	-		DZA65_RS19725	0.50	-1.5
4,272,692	-		DZA65_RS19725	0.51	-0.5
4,272,692	-		DZA65_RS19725	0.51	-1.6
4,272,692	-		DZA65_RS19725	0.51	-1.8
4,272,692	-		DZA65_RS19725	0.51	-1.3
4,272,692	-		DZA65_RS19725	0.51	-0.8
4,272,697	+		DZA65_RS19725	0.52	-0.9
4,272,697	+		DZA65_RS19725	0.52	-1.3
4,272,698	-		DZA65_RS19725	0.52	-1.2
4,272,750	-		DZA65_RS19725	0.56	-1.5
4,272,755	-		DZA65_RS19725	0.56	+1.1
4,272,755	-		DZA65_RS19725	0.56	-1.5
4,272,779	+		DZA65_RS19725	0.58	-2.6
4,272,779	+		DZA65_RS19725	0.58	+0.7
4,272,780	-		DZA65_RS19725	0.58	-1.8
4,272,782	+		DZA65_RS19725	0.58	-0.9
4,272,782	+		DZA65_RS19725	0.58	-1.7
4,272,782	+		DZA65_RS19725	0.58	-0.1
4,272,782	+		DZA65_RS19725	0.58	-0.8
4,272,782	+		DZA65_RS19725	0.58	+0.1
4,272,782	+		DZA65_RS19725	0.58	-1.5
4,272,782	+		DZA65_RS19725	0.58	+1.1
4,272,782	+		DZA65_RS19725	0.58	-2.1
4,272,782	+		DZA65_RS19725	0.58	-3.3
4,272,782	+		DZA65_RS19725	0.58	-0.4
4,272,783	-		DZA65_RS19725	0.58	-2.1
4,272,783	-		DZA65_RS19725	0.58	-0.6
4,272,783	-		DZA65_RS19725	0.58	-0.6
4,272,783	-		DZA65_RS19725	0.58	-4.2
4,272,783	-		DZA65_RS19725	0.58	-1.5
4,272,783	-		DZA65_RS19725	0.58	-1.3
4,272,783	-		DZA65_RS19725	0.58	+1.3
4,272,783	-		DZA65_RS19725	0.58	-0.7
4,272,783	-		DZA65_RS19725	0.58	+1.2
4,272,783	-		DZA65_RS19725	0.58	-0.6
4,272,783	-		DZA65_RS19725	0.58	-2.2
4,272,865	+		DZA65_RS19725	0.64	-1.7
4,272,865	+		DZA65_RS19725	0.64	-1.7
4,272,866	-		DZA65_RS19725	0.64	-1.4
4,272,866	-		DZA65_RS19725	0.64	-0.9
4,272,874	+		DZA65_RS19725	0.65	-1.7
4,272,880	+		DZA65_RS19725	0.65	-1.8
4,272,962	+		DZA65_RS19725	0.71	+0.7