Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19550

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,232,461	+				-0.9
4,232,461	+				+0.6
4,232,464	+				-1.7
4,232,464	+				+1.1
4,232,464	+				-1.1
4,232,465	-				-0.7
4,232,465	-				-0.5
4,232,465	-				-1.5
4,232,465	-				-0.7
4,233,243	+				+0.7
4,233,244	-				-0.3
4,233,244	-				-1.1
4,233,248	-				-0.9
4,233,264	-				+1.2
4,233,264	-				-0.5
4,233,264	-				-1.5
4,233,264	-				-1.8
4,233,264	-				+0.3
4,233,264	-				-1.5
4,233,267	-				+0.2
4,233,267	-				-0.7
4,233,267	-				-0.1
4,233,268	+				-0.1
4,233,268	+				+0.7
4,233,268	+				-2.0
4,233,269	-				+1.7
4,233,317	+				+1.7
4,233,317	+				-2.4
4,233,318	-				+0.1
4,233,318	-				-1.0
4,233,318	-				+0.9
4,233,340	+				+0.0
4,233,340	+				+0.6
4,233,340	+				-0.8
4,233,341	-				-0.2
4,233,341	-				+0.7
4,233,341	-				-2.1
4,233,341	-				-0.1
4,233,341	-				-0.3
4,233,341	-				+0.5
4,233,381	+				+1.5
4,233,508	+				-0.2
4,233,509	-				+2.0
4,233,509	-				+0.3
4,233,509	-				+0.9
4,233,509	-				-0.9
4,233,511	+				+0.6
4,233,511	+				-1.5
4,233,511	+				-0.5
4,233,512	-		DZA65_RS19550	0.10	+0.4
4,233,512	-				+1.7
4,233,512	-		DZA65_RS19550	0.10	-1.1
4,233,512	-		DZA65_RS19550	0.10	+3.0
4,233,535	+		DZA65_RS19550	0.13	+1.1
4,233,536	-		DZA65_RS19550	0.13	+0.9
4,233,630	+		DZA65_RS19550	0.23	-2.3
4,233,630	+		DZA65_RS19550	0.23	+0.1
4,233,630	+				+0.3
4,233,630	+		DZA65_RS19550	0.23	+2.1
4,233,630	+		DZA65_RS19550	0.23	-1.7
4,233,630	+		DZA65_RS19550	0.23	+1.2
4,233,630	+		DZA65_RS19550	0.23	-1.3
4,233,631	-		DZA65_RS19550	0.23	-0.3
4,233,631	-		DZA65_RS19550	0.23	+0.7
4,233,631	-		DZA65_RS19550	0.23	-2.1
4,233,631	-		DZA65_RS19550	0.23	-0.3
4,233,631	-		DZA65_RS19550	0.23	-0.3
4,233,631	-		DZA65_RS19550	0.23	-0.7
4,233,856	+		DZA65_RS19550	0.49	-0.1
4,233,857	-		DZA65_RS19550	0.49	-1.8
4,233,893	-		DZA65_RS19550	0.53	-0.5
4,233,911	+		DZA65_RS19550	0.55	-0.3
4,233,911	+		DZA65_RS19550	0.55	+0.7
4,233,911	+		DZA65_RS19550	0.55	-1.6
4,233,912	-		DZA65_RS19550	0.55	+2.2
4,233,947	+		DZA65_RS19550	0.59	-2.2
4,233,947	+		DZA65_RS19550	0.59	-0.9
4,233,948	-		DZA65_RS19550	0.59	+0.2
4,234,068	+		DZA65_RS19550	0.72	+0.7
4,234,084	+		DZA65_RS19550	0.74	-0.0
4,234,085	-		DZA65_RS19550	0.74	-0.7
4,234,085	-		DZA65_RS19550	0.74	-2.0
4,234,104	+		DZA65_RS19550	0.76	-0.3
4,234,104	+		DZA65_RS19550	0.76	-1.9
4,234,104	+		DZA65_RS19550	0.76	+0.2
4,234,105	-		DZA65_RS19550	0.76	-1.4
4,234,105	-		DZA65_RS19550	0.76	-1.3
4,234,105	-		DZA65_RS19550	0.76	-0.7
4,234,135	+		DZA65_RS19550	0.80	-2.1
4,234,135	+		DZA65_RS19550	0.80	+0.7
4,234,135	+		DZA65_RS19550	0.80	+0.7
4,234,135	+		DZA65_RS19550	0.80	-1.1
4,234,135	+		DZA65_RS19550	0.80	-1.3
4,234,135	+		DZA65_RS19550	0.80	-0.5
4,234,135	+		DZA65_RS19550	0.80	-0.1
4,234,135	+		DZA65_RS19550	0.80	-0.3
4,234,135	+				+1.5
4,234,135	+		DZA65_RS19550	0.80	-1.3
4,234,136	-		DZA65_RS19550	0.80	-0.9
4,234,136	-		DZA65_RS19550	0.80	-0.1
4,234,136	-		DZA65_RS19550	0.80	-0.1
4,234,136	-		DZA65_RS19550	0.80	-0.7
4,234,136	-		DZA65_RS19550	0.80	+0.1
4,234,136	-		DZA65_RS19550	0.80	+1.0
4,234,136	-		DZA65_RS19550	0.80	-0.6
4,234,136	-		DZA65_RS19550	0.80	+0.9
4,234,136	-		DZA65_RS19550	0.80	-0.7
4,234,223	+		DZA65_RS19550	0.90	+0.1
4,234,223	+		DZA65_RS19550	0.90	-0.8
4,234,223	+		DZA65_RS19550	0.90	-0.8
4,234,224	-		DZA65_RS19550	0.90	-1.5
4,234,224	-		DZA65_RS19550	0.90	+0.7
4,234,224	-		DZA65_RS19550	0.90	+0.3
4,234,419	+				-2.3
4,234,419	+				-1.5
4,234,419	+				-0.2
4,234,420	-				+0.1
4,234,420	-				+2.4
4,234,491	+		DZA65_RS19555	0.19	-0.3
4,234,491	+		DZA65_RS19555	0.19	+0.9
4,234,492	-		DZA65_RS19555	0.19	-1.8
4,234,518	+		DZA65_RS19555	0.23	-0.6
4,234,519	-		DZA65_RS19555	0.23	-0.5
4,234,540	+		DZA65_RS19555	0.26	-0.3
4,234,550	+		DZA65_RS19555	0.27	-0.7
4,234,550	+		DZA65_RS19555	0.27	+1.3
4,234,550	+		DZA65_RS19555	0.27	-1.0
4,234,584	-		DZA65_RS19555	0.32	+0.1
4,234,612	-		DZA65_RS19555	0.36	+0.7
4,234,658	-		DZA65_RS19555	0.42	+0.7
4,234,712	+		DZA65_RS19555	0.49	-0.1
4,234,712	+		DZA65_RS19555	0.49	+0.7
4,234,712	+		DZA65_RS19555	0.49	+1.9
4,234,712	+		DZA65_RS19555	0.49	-0.7
4,234,712	+		DZA65_RS19555	0.49	-0.7
4,234,712	+		DZA65_RS19555	0.49	-0.2
4,234,713	-		DZA65_RS19555	0.50	+0.1
4,234,713	-		DZA65_RS19555	0.50	-2.0
4,234,713	-		DZA65_RS19555	0.50	+0.3
4,234,713	-		DZA65_RS19555	0.50	-1.3
4,234,713	-		DZA65_RS19555	0.50	+1.4
4,234,713	-		DZA65_RS19555	0.50	+0.4
4,234,713	-		DZA65_RS19555	0.50	-0.3
4,234,713	-		DZA65_RS19555	0.50	-0.3
4,234,713	-		DZA65_RS19555	0.50	-0.1
4,234,713	-		DZA65_RS19555	0.50	+0.5
4,234,713	-		DZA65_RS19555	0.50	-1.1
4,234,713	-		DZA65_RS19555	0.50	-0.3
4,234,713	-		DZA65_RS19555	0.50	+1.1
4,234,713	-		DZA65_RS19555	0.50	+0.1
4,234,713	-		DZA65_RS19555	0.50	+0.3
4,234,713	-		DZA65_RS19555	0.50	-2.0
4,234,782	+		DZA65_RS19555	0.59	+0.4
4,234,783	-		DZA65_RS19555	0.59	-0.4
4,234,783	-		DZA65_RS19555	0.59	+0.9
4,234,813	+		DZA65_RS19555	0.63	-0.7
4,234,814	-		DZA65_RS19555	0.63	-0.7
4,234,840	+		DZA65_RS19555	0.67	+0.9
4,234,840	+		DZA65_RS19555	0.67	-1.8
4,234,840	+		DZA65_RS19555	0.67	-0.1
4,234,841	-		DZA65_RS19555	0.67	-0.1
4,234,857	+		DZA65_RS19555	0.69	+1.7
4,234,918	+		DZA65_RS19555	0.78	-1.1
4,234,918	+		DZA65_RS19555	0.78	+0.2
4,234,919	-		DZA65_RS19555	0.78	-0.3
4,234,919	-		DZA65_RS19555	0.78	+0.4
4,234,925	+		DZA65_RS19555	0.79	-0.9
4,234,926	-		DZA65_RS19555	0.79	+0.5
4,234,926	-		DZA65_RS19555	0.79	-0.7
4,234,926	-				-0.3
4,234,926	-		DZA65_RS19555	0.79	-0.3
4,234,926	-		DZA65_RS19555	0.79	-0.7
4,234,926	-		DZA65_RS19555	0.79	+0.3
4,234,926	-		DZA65_RS19555	0.79	-1.8
4,234,926	-		DZA65_RS19555	0.79	-1.0
4,235,000	+		DZA65_RS19555	0.89	+0.3
4,235,000	+		DZA65_RS19555	0.89	+1.7
4,235,140	-				-0.2
4,235,140	-				-0.9
4,235,141	+				+0.3
4,235,141	+				-1.1
4,235,141	+				-0.1
4,235,141	+				-0.3
4,235,142	-				+2.1
4,235,142	-				+0.2
4,235,142	-				-0.3
4,235,142	-				-2.3
4,235,142	-				+0.1
4,235,142	-				-1.8
4,235,142	-				-3.0
4,235,142	-				+1.2
4,235,142	-				-1.3
4,235,142	-				+0.2
4,235,142	-				-0.1
4,235,176	-				-0.4
4,235,193	+				+1.7
4,235,252	+				-1.3
4,235,253	-				+0.7
4,235,265	+				-1.5
4,235,266	-				+0.5
4,235,266	-				+0.1