Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19240

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,158,728	+		DZA65_RS19235	0.40	+0.1
4,158,785	+		DZA65_RS19235	0.44	-0.3
4,158,785	+		DZA65_RS19235	0.44	+0.1
4,158,786	-		DZA65_RS19235	0.44	-0.9
4,158,786	-		DZA65_RS19235	0.44	-0.1
4,158,786	-		DZA65_RS19235	0.44	-0.7
4,158,798	+		DZA65_RS19235	0.45	-0.3
4,158,799	-		DZA65_RS19235	0.45	-0.9
4,158,930	+		DZA65_RS19235	0.54	+0.7
4,158,930	+		DZA65_RS19235	0.54	+0.7
4,158,930	+		DZA65_RS19235	0.54	+0.9
4,158,930	+		DZA65_RS19235	0.54	-1.9
4,158,930	+		DZA65_RS19235	0.54	+1.2
4,158,930	+		DZA65_RS19235	0.54	+0.7
4,158,930	+		DZA65_RS19235	0.54	+0.5
4,158,931	-		DZA65_RS19235	0.54	-1.2
4,158,931	-		DZA65_RS19235	0.54	+1.7
4,158,931	-		DZA65_RS19235	0.54	-0.3
4,158,931	-		DZA65_RS19235	0.54	+1.7
4,158,931	-		DZA65_RS19235	0.54	-1.5
4,158,931	-		DZA65_RS19235	0.54	+0.3
4,158,931	-		DZA65_RS19235	0.54	-0.9
4,158,931	-		DZA65_RS19235	0.54	+0.9
4,158,931	-		DZA65_RS19235	0.54	-0.3
4,159,071	+		DZA65_RS19235	0.64	+1.1
4,159,071	+		DZA65_RS19235	0.64	+0.1
4,159,071	+		DZA65_RS19235	0.64	+0.1
4,159,071	+		DZA65_RS19235	0.64	-0.5
4,159,071	+		DZA65_RS19235	0.64	-0.2
4,159,071	+		DZA65_RS19235	0.64	-1.4
4,159,072	-		DZA65_RS19235	0.64	+0.7
4,159,072	-		DZA65_RS19235	0.64	-0.5
4,159,072	-		DZA65_RS19235	0.64	-1.1
4,159,072	-		DZA65_RS19235	0.64	+0.2
4,159,140	+		DZA65_RS19235	0.69	+1.3
4,159,140	+		DZA65_RS19235	0.69	-0.3
4,159,141	-		DZA65_RS19235	0.69	-0.3
4,159,141	-		DZA65_RS19235	0.69	+2.2
4,159,149	+		DZA65_RS19235	0.70	+0.1
4,159,149	+		DZA65_RS19235	0.70	+0.5
4,159,149	+		DZA65_RS19235	0.70	-3.2
4,159,149	+		DZA65_RS19235	0.70	-0.9
4,159,149	+		DZA65_RS19235	0.70	-0.3
4,159,149	+		DZA65_RS19235	0.70	+1.3
4,159,149	+		DZA65_RS19235	0.70	-2.3
4,159,150	-		DZA65_RS19235	0.70	-0.3
4,159,150	-		DZA65_RS19235	0.70	-0.8
4,159,150	-		DZA65_RS19235	0.70	-0.7
4,159,150	-		DZA65_RS19235	0.70	-0.7
4,159,170	+		DZA65_RS19235	0.71	+0.9
4,159,170	+		DZA65_RS19235	0.71	-0.2
4,159,170	+		DZA65_RS19235	0.71	-0.9
4,159,170	+		DZA65_RS19235	0.71	+1.1
4,159,170	+		DZA65_RS19235	0.71	-0.7
4,159,170	+		DZA65_RS19235	0.71	-1.2
4,159,170	+		DZA65_RS19235	0.71	+0.7
4,159,170	+		DZA65_RS19235	0.71	-2.8
4,159,170	+		DZA65_RS19235	0.71	-0.1
4,159,170	+		DZA65_RS19235	0.71	+0.2
4,159,171	-		DZA65_RS19235	0.71	+0.1
4,159,171	-		DZA65_RS19235	0.71	-1.3
4,159,171	-		DZA65_RS19235	0.71	+0.3
4,159,171	-		DZA65_RS19235	0.71	-2.1
4,159,171	-		DZA65_RS19235	0.71	+0.7
4,159,171	-		DZA65_RS19235	0.71	-0.9
4,159,171	-		DZA65_RS19235	0.71	-1.0
4,159,311	+		DZA65_RS19235	0.81	-1.2
4,159,311	+		DZA65_RS19235	0.81	-1.5
4,159,434	+		DZA65_RS19235	0.90	+0.1
4,159,434	+		DZA65_RS19235	0.90	-0.5
4,159,434	+				-1.2
4,159,434	+		DZA65_RS19235	0.90	-1.5
4,159,434	+		DZA65_RS19235	0.90	+2.7
4,159,434	+		DZA65_RS19235	0.90	+1.7
4,159,434	+		DZA65_RS19235	0.90	+1.2
4,159,455	+				-0.2
4,159,455	+				-2.7
4,159,455	+				-1.3
4,159,455	+				-1.2
4,159,455	+				+0.7
4,159,455	+				+0.7
4,159,455	+				-2.3
4,159,455	+				-0.0
4,159,455	+				+3.7
4,159,455	+				-0.3
4,159,455	+				-0.9
4,159,456	-				+0.7
4,159,456	-				+1.8
4,159,456	-				-0.7
4,159,456	-				+1.2
4,159,456	-				-1.2
4,159,502	+				+0.7
4,159,521	+				-1.9
4,159,521	+				-1.0
4,159,521	+				+1.1
4,159,534	+				+1.3
4,159,537	+				+3.0
4,159,572	+				-0.7
4,159,572	+				+0.1
4,159,572	+				+0.7
4,159,573	-				-0.7
4,159,585	+				+0.1
4,159,597	+				-1.5
4,159,598	-				+0.1
4,159,643	+				+0.7
4,159,643	+				-0.9
4,159,795	+		DZA65_RS19240	0.58	+0.1
4,159,795	+		DZA65_RS19240	0.58	+2.7
4,159,795	+		DZA65_RS19240	0.58	-0.9
4,159,795	+		DZA65_RS19240	0.58	-0.0
4,159,795	+		DZA65_RS19240	0.58	-1.2
4,159,796	-		DZA65_RS19240	0.59	-1.9
4,159,796	-		DZA65_RS19240	0.59	+1.1
4,159,860	+				+0.8
4,159,860	+				-1.2
4,159,860	+				+1.7
4,159,860	+				-1.4
4,159,860	+				+0.4
4,159,860	+				-0.0
4,159,860	+				-0.3
4,159,860	+				-1.8
4,159,860	+				-0.5
4,159,860	+				+0.7
4,159,860	+				+0.1
4,159,860	+				+0.4
4,159,860	+				+1.0
4,159,860	+				+1.7
4,159,860	+				-0.8
4,159,860	+				+0.1
4,159,860	+				-1.9
4,159,860	+				+2.3
4,159,861	-				-1.7
4,159,861	-				+1.7
4,159,861	-				+0.3
4,159,861	-				-1.5
4,159,861	-				+1.1
4,159,861	-				+0.4
4,159,861	-				+0.3
4,159,861	-				-2.7
4,159,861	-				+0.2
4,159,861	-				+1.1
4,159,861	-				+0.1
4,159,861	-				-0.3
4,159,861	-				+1.7
4,159,861	-				-1.7
4,159,861	-				-0.6
4,159,861	-				+0.7
4,159,917	-				+1.7
4,159,925	-				+0.7
4,159,925	-				+0.3
4,159,927	+				+0.7
4,159,928	-				-1.8
4,159,929	+				-1.5
4,159,930	-				+0.3
4,159,939	+				+2.1
4,159,939	+				-1.0
4,159,940	-				-1.0
4,159,974	+				+1.2
4,159,974	+				-1.2
4,159,974	+				-0.2
4,159,974	+				-1.0
4,159,975	-				+1.1
4,159,975	-				-1.2
4,160,024	+				-3.2
4,160,025	-				+0.3
4,160,185	+		DZA65_RS19245	0.13	-0.8
4,160,186	-		DZA65_RS19245	0.13	+0.1
4,160,201	+		DZA65_RS19245	0.14	+0.2
4,160,283	-		DZA65_RS19245	0.18	+2.7
4,160,350	+		DZA65_RS19245	0.22	-2.3
4,160,350	+		DZA65_RS19245	0.22	-0.7
4,160,350	+		DZA65_RS19245	0.22	-1.7
4,160,350	+		DZA65_RS19245	0.22	-0.5
4,160,350	+		DZA65_RS19245	0.22	-0.7
4,160,351	-		DZA65_RS19245	0.23	+0.1
4,160,351	-		DZA65_RS19245	0.23	-0.3
4,160,351	-		DZA65_RS19245	0.23	+0.7
4,160,354	-		DZA65_RS19245	0.23	-0.5
4,160,367	+		DZA65_RS19245	0.24	+0.3
4,160,367	+		DZA65_RS19245	0.24	-0.3
4,160,367	+		DZA65_RS19245	0.24	+1.1
4,160,367	+		DZA65_RS19245	0.24	-0.2
4,160,367	+		DZA65_RS19245	0.24	+1.2
4,160,367	+		DZA65_RS19245	0.24	+1.1
4,160,367	+		DZA65_RS19245	0.24	-0.1
4,160,367	+		DZA65_RS19245	0.24	-0.5
4,160,368	-		DZA65_RS19245	0.24	-0.7
4,160,368	-		DZA65_RS19245	0.24	-0.3
4,160,368	-		DZA65_RS19245	0.24	-0.2
4,160,368	-		DZA65_RS19245	0.24	+0.1
4,160,368	-		DZA65_RS19245	0.24	-1.7
4,160,444	+		DZA65_RS19245	0.28	+0.1
4,160,444	+		DZA65_RS19245	0.28	+0.1
4,160,444	+		DZA65_RS19245	0.28	+1.7
4,160,445	-		DZA65_RS19245	0.28	-1.8
4,160,445	-		DZA65_RS19245	0.28	-0.3
4,160,445	-		DZA65_RS19245	0.28	+0.1
4,160,445	-		DZA65_RS19245	0.28	-0.3
4,160,522	-		DZA65_RS19245	0.33	-3.6
4,160,522	-		DZA65_RS19245	0.33	-0.7
4,160,673	+		DZA65_RS19245	0.42	+0.7
4,160,673	+		DZA65_RS19245	0.42	+0.3
4,160,674	-		DZA65_RS19245	0.42	-0.5
4,160,674	-		DZA65_RS19245	0.42	-2.0
4,160,711	+		DZA65_RS19245	0.44	-0.8
4,160,730	+		DZA65_RS19245	0.45	-0.4