Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18545

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,995,373	+		DZA65_RS18535	0.82	-1.1
3,995,373	+		DZA65_RS18535	0.82	+0.8
3,995,374	-		DZA65_RS18535	0.83	-0.2
3,995,374	-		DZA65_RS18535	0.83	-0.8
3,995,374	-		DZA65_RS18535	0.83	-2.0
3,995,377	+		DZA65_RS18535	0.83	-1.3
3,995,377	+		DZA65_RS18535	0.83	-0.4
3,995,377	+		DZA65_RS18535	0.83	+0.4
3,995,377	+		DZA65_RS18535	0.83	+0.0
3,995,377	+		DZA65_RS18535	0.83	+0.9
3,995,377	+		DZA65_RS18535	0.83	-0.4
3,995,377	+		DZA65_RS18535	0.83	-1.4
3,995,378	-		DZA65_RS18535	0.83	+1.8
3,995,378	-		DZA65_RS18535	0.83	-1.3
3,995,398	+		DZA65_RS18535	0.84	-0.1
3,995,461	+		DZA65_RS18535	0.89	-0.3
3,995,461	+		DZA65_RS18535	0.89	-0.2
3,995,462	-		DZA65_RS18535	0.89	+0.0
3,995,541	+				-1.2
3,995,541	+				-0.5
3,995,541	+				-0.7
3,995,541	+				+0.2
3,995,542	-				+1.3
3,995,542	-				+0.1
3,995,542	-				-0.1
3,995,542	-				+1.2
3,995,542	-				-1.2
3,995,879	+		DZA65_RS18540	0.10	-1.7
3,995,879	+		DZA65_RS18540	0.10	-0.7
3,995,879	+		DZA65_RS18540	0.10	+0.6
3,995,880	-		DZA65_RS18540	0.11	+0.1
3,995,880	-		DZA65_RS18540	0.11	-0.4
3,995,880	-		DZA65_RS18540	0.11	-0.9
3,996,066	+		DZA65_RS18540	0.68	-0.1
3,996,067	-		DZA65_RS18540	0.68	-1.3
3,996,067	-		DZA65_RS18540	0.68	-0.0
3,996,071	+		DZA65_RS18540	0.69	+0.1
3,996,071	+		DZA65_RS18540	0.69	+0.2
3,996,071	+		DZA65_RS18540	0.69	+0.3
3,996,071	+		DZA65_RS18540	0.69	-0.4
3,996,071	+		DZA65_RS18540	0.69	-0.9
3,996,072	-		DZA65_RS18540	0.69	-1.4
3,996,072	-		DZA65_RS18540	0.69	-0.6
3,996,104	+		DZA65_RS18540	0.79	-0.9
3,996,104	+		DZA65_RS18540	0.79	-0.4
3,996,104	+		DZA65_RS18540	0.79	-0.7
3,996,104	+		DZA65_RS18540	0.79	-0.4
3,996,104	+		DZA65_RS18540	0.79	-0.4
3,996,104	+		DZA65_RS18540	0.79	-0.1
3,996,104	+		DZA65_RS18540	0.79	+0.1
3,996,105	-		DZA65_RS18540	0.80	-0.8
3,996,105	-		DZA65_RS18540	0.80	+1.9
3,996,105	-		DZA65_RS18540	0.80	+0.1
3,996,105	-		DZA65_RS18540	0.80	-1.2
3,996,105	-		DZA65_RS18540	0.80	-0.1
3,996,105	-		DZA65_RS18540	0.80	+0.1
3,996,105	-				+0.6
3,996,176	+				-1.4
3,996,176	+				-1.8
3,996,176	+				-0.7
3,996,176	+				+0.1
3,996,176	+				-0.9
3,996,176	+				+1.4
3,996,177	-				-0.7
3,996,177	-				+0.1
3,996,177	-				+0.1
3,996,177	-				-0.6
3,996,177	-				+1.4
3,996,177	-				+0.8
3,996,177	-				+0.1
3,996,177	-				-0.7
3,996,177	-				+0.1
3,996,177	-				-1.4
3,996,198	+				+1.3
3,996,198	+				+1.5
3,996,198	+				-0.7
3,996,198	+				-0.9
3,996,198	+				-0.4
3,996,198	+				+0.9
3,996,198	+				-0.9
3,996,199	-				+0.8
3,996,199	-				+0.1
3,996,199	-				-1.4
3,996,199	-				+0.5
3,996,199	-				+0.6
3,996,199	-				+2.4
3,996,220	+				+1.3
3,996,220	+				+0.4
3,996,220	+				-0.9
3,996,220	+				+1.6
3,996,221	-				-0.7
3,996,221	-				+0.6
3,996,221	-				-0.6
3,996,221	-				-0.6
3,996,221	-				-0.9
3,996,221	-				+0.2
3,996,221	-				-1.7
3,996,269	+				+0.2
3,996,269	+				+2.6
3,996,269	+				-0.1
3,996,270	-				+0.1
3,996,270	-				-1.5
3,996,270	-				-0.7
3,996,307	+				+0.1
3,996,307	+				-1.5
3,996,307	+				-0.4
3,996,307	+				-0.3
3,996,307	+				+0.3
3,996,308	-				-1.3
3,996,308	-				-2.5
3,996,308	-				-0.5
3,996,310	+				-1.5
3,996,310	+				-0.1
3,996,310	+				+0.6
3,996,310	+				-0.3
3,996,310	+				-2.6
3,996,310	+				+1.1
3,996,310	+				+0.7
3,996,310	+				+1.2
3,996,310	+				-0.2
3,996,311	-				-1.5
3,996,311	-				+0.6
3,996,311	-				+0.3
3,996,311	-				-1.2
3,996,311	-				-0.2
3,996,311	-				-1.5
3,996,456	-				+0.2
3,996,552	+		DZA65_RS18545	0.18	+3.2
3,996,553	-		DZA65_RS18545	0.18	-1.2
3,996,553	-		DZA65_RS18545	0.18	-0.8
3,996,553	-		DZA65_RS18545	0.18	+1.1
3,996,553	-		DZA65_RS18545	0.18	-0.9
3,996,553	-		DZA65_RS18545	0.18	+1.4
3,996,696	-		DZA65_RS18545	0.32	+0.6
3,996,701	+		DZA65_RS18545	0.32	+0.1
3,996,701	+		DZA65_RS18545	0.32	-2.5
3,996,701	+		DZA65_RS18545	0.32	-0.7
3,996,702	-		DZA65_RS18545	0.33	-0.4
3,996,702	-		DZA65_RS18545	0.33	-0.2
3,996,702	-		DZA65_RS18545	0.33	+0.1
3,996,702	-		DZA65_RS18545	0.33	+1.6
3,996,736	+		DZA65_RS18545	0.36	+0.8
3,996,736	+		DZA65_RS18545	0.36	-0.8
3,996,736	+		DZA65_RS18545	0.36	-0.9
3,996,736	+		DZA65_RS18545	0.36	-0.9
3,996,736	+		DZA65_RS18545	0.36	+1.6
3,996,736	+		DZA65_RS18545	0.36	-1.4
3,996,737	-		DZA65_RS18545	0.36	-0.4
3,996,737	-		DZA65_RS18545	0.36	-0.9
3,996,737	-		DZA65_RS18545	0.36	+0.8
3,996,739	-		DZA65_RS18545	0.36	-1.5
3,996,884	-		DZA65_RS18545	0.51	+0.1
3,996,918	+		DZA65_RS18545	0.54	-1.8
3,996,918	+		DZA65_RS18545	0.54	-0.2
3,996,919	-		DZA65_RS18545	0.54	+0.3
3,996,919	-		DZA65_RS18545	0.54	-0.5
3,996,919	-		DZA65_RS18545	0.54	-0.9
3,996,919	-		DZA65_RS18545	0.54	-2.2
3,996,993	+		DZA65_RS18545	0.61	+1.1
3,996,993	+		DZA65_RS18545	0.61	-1.2
3,997,000	+		DZA65_RS18545	0.62	-0.7
3,997,000	+		DZA65_RS18545	0.62	-1.7
3,997,000	+		DZA65_RS18545	0.62	+0.6
3,997,001	-				+0.6
3,997,116	+		DZA65_RS18545	0.73	-0.7
3,997,116	+		DZA65_RS18545	0.73	+0.9
3,997,116	+		DZA65_RS18545	0.73	-0.5
3,997,116	+		DZA65_RS18545	0.73	-0.9
3,997,117	-		DZA65_RS18545	0.74	+0.8
3,997,117	-		DZA65_RS18545	0.74	+0.5
3,997,117	-		DZA65_RS18545	0.74	+1.1
3,997,117	-		DZA65_RS18545	0.74	+0.3
3,997,134	-		DZA65_RS18545	0.75	-0.4
3,997,134	-		DZA65_RS18545	0.75	+0.1
3,997,181	+		DZA65_RS18545	0.80	-1.9
3,997,181	+		DZA65_RS18545	0.80	+0.6
3,997,182	-		DZA65_RS18545	0.80	+1.6
3,997,182	-		DZA65_RS18545	0.80	+0.1
3,997,213	+		DZA65_RS18545	0.83	-0.1
3,997,213	+		DZA65_RS18545	0.83	-0.7
3,997,214	-		DZA65_RS18545	0.83	-1.9
3,997,240	+		DZA65_RS18545	0.86	+1.6
3,997,240	+		DZA65_RS18545	0.86	-0.9
3,997,240	+		DZA65_RS18545	0.86	+1.2
3,997,240	+		DZA65_RS18545	0.86	-0.7
3,997,240	+		DZA65_RS18545	0.86	-0.9
3,997,240	+		DZA65_RS18545	0.86	-0.7
3,997,240	+				+0.6
3,997,241	-		DZA65_RS18545	0.86	-0.9
3,997,241	-		DZA65_RS18545	0.86	+0.6
3,997,400	+				-1.4
3,997,401	-				-0.8
3,997,505	+				-1.2
3,997,505	+				-0.5
3,997,505	+				-1.5
3,997,505	+				-0.4
3,997,505	+				-0.9
3,997,506	-				+0.6
3,997,506	-				-1.7
3,997,506	-				-0.4
3,997,506	-				-1.3
3,997,506	-				-0.9
3,997,529	+		DZA65_RS18550	0.10	-0.4
3,997,556	+		DZA65_RS18550	0.12	-2.3
3,997,556	+		DZA65_RS18550	0.12	+0.1
3,997,556	+		DZA65_RS18550	0.12	-1.8
3,997,557	-		DZA65_RS18550	0.13	+0.1
3,997,681	+		DZA65_RS18550	0.22	-0.9
3,997,681	+		DZA65_RS18550	0.22	-2.4
3,997,681	+		DZA65_RS18550	0.22	-0.9
3,997,682	-		DZA65_RS18550	0.22	-1.6
3,997,682	-		DZA65_RS18550	0.22	-2.4
3,997,682	-		DZA65_RS18550	0.22	-2.4
3,997,682	-		DZA65_RS18550	0.22	-0.7
3,997,721	+		DZA65_RS18550	0.25	-1.4
3,997,721	+		DZA65_RS18550	0.25	-0.5
3,997,722	-		DZA65_RS18550	0.26	+0.3
3,997,730	+		DZA65_RS18550	0.26	-0.9
3,997,730	+		DZA65_RS18550	0.26	-2.4
3,997,730	+		DZA65_RS18550	0.26	-4.2
3,997,730	+		DZA65_RS18550	0.26	-0.1
3,997,731	-		DZA65_RS18550	0.26	-1.2
3,997,731	-		DZA65_RS18550	0.26	+0.1
3,997,731	-		DZA65_RS18550	0.26	-1.7
3,997,731	-		DZA65_RS18550	0.26	-2.6
3,997,931	+		DZA65_RS18550	0.42	-1.4
3,997,931	+		DZA65_RS18550	0.42	-1.4
3,997,932	-		DZA65_RS18550	0.42	-1.2
3,997,932	-		DZA65_RS18550	0.42	-1.5
3,997,932	-		DZA65_RS18550	0.42	-0.8
3,997,932	-		DZA65_RS18550	0.42	-1.5
3,997,932	-		DZA65_RS18550	0.42	-1.4
3,997,941	+		DZA65_RS18550	0.43	-0.8
3,998,159	+		DZA65_RS18550	0.60	-2.1
3,998,160	-		DZA65_RS18550	0.60	-0.7
3,998,232	+		DZA65_RS18550	0.66	-3.2
3,998,233	-		DZA65_RS18550	0.66	-0.8
3,998,235	+		DZA65_RS18550	0.66	+0.1
3,998,235	+		DZA65_RS18550	0.66	-1.6
3,998,236	-		DZA65_RS18550	0.66	-2.7
3,998,236	-		DZA65_RS18550	0.66	-1.8
3,998,236	-		DZA65_RS18550	0.66	-1.8
3,998,236	-		DZA65_RS18550	0.66	-0.2
3,998,326	+		DZA65_RS18550	0.73	-0.9
3,998,326	+		DZA65_RS18550	0.73	-2.7
3,998,327	-		DZA65_RS18550	0.73	-2.4
3,998,327	-		DZA65_RS18550	0.73	-2.6
3,998,327	-		DZA65_RS18550	0.73	-1.7
3,998,371	+		DZA65_RS18550	0.77	-2.3
3,998,371	+		DZA65_RS18550	0.77	-0.7
3,998,371	+		DZA65_RS18550	0.77	-2.2
3,998,371	+		DZA65_RS18550	0.77	-1.7