Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16940

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,658,792	+		DZA65_RS16935	0.46	-1.3
3,658,792	+		DZA65_RS16935	0.46	+0.5
3,658,792	+		DZA65_RS16935	0.46	-0.8
3,658,792	+		DZA65_RS16935	0.46	-0.2
3,658,793	-		DZA65_RS16935	0.47	+0.5
3,658,793	-		DZA65_RS16935	0.47	-0.0
3,658,793	-		DZA65_RS16935	0.47	-1.4
3,658,809	+		DZA65_RS16935	0.48	+0.7
3,658,810	-		DZA65_RS16935	0.48	-0.8
3,658,878	+		DZA65_RS16935	0.52	+1.5
3,658,878	+		DZA65_RS16935	0.52	-0.1
3,658,879	-		DZA65_RS16935	0.52	-0.9
3,658,879	-		DZA65_RS16935	0.52	+1.4
3,658,921	-		DZA65_RS16935	0.54	+2.5
3,658,975	+		DZA65_RS16935	0.58	+1.8
3,658,975	+		DZA65_RS16935	0.58	+1.5
3,658,975	+		DZA65_RS16935	0.58	-1.3
3,658,975	+		DZA65_RS16935	0.58	-0.5
3,658,975	+		DZA65_RS16935	0.58	-1.7
3,658,975	+		DZA65_RS16935	0.58	-0.3
3,658,975	+		DZA65_RS16935	0.58	+0.9
3,658,975	+		DZA65_RS16935	0.58	+0.1
3,658,975	+		DZA65_RS16935	0.58	-1.0
3,658,976	-		DZA65_RS16935	0.58	-0.5
3,658,976	-		DZA65_RS16935	0.58	-0.1
3,658,976	-		DZA65_RS16935	0.58	+0.5
3,658,976	-		DZA65_RS16935	0.58	-1.3
3,658,976	-		DZA65_RS16935	0.58	+1.5
3,658,976	-		DZA65_RS16935	0.58	-0.5
3,658,976	-		DZA65_RS16935	0.58	-0.7
3,659,029	-		DZA65_RS16935	0.61	+0.5
3,659,029	-		DZA65_RS16935	0.61	+0.5
3,659,101	+				-2.2
3,659,102	-		DZA65_RS16935	0.66	+0.5
3,659,102	-		DZA65_RS16935	0.66	-0.0
3,659,159	-		DZA65_RS16935	0.69	+0.2
3,659,180	-		DZA65_RS16935	0.71	+1.0
3,659,180	-		DZA65_RS16935	0.71	+1.5
3,659,182	-		DZA65_RS16935	0.71	-0.4
3,659,182	-		DZA65_RS16935	0.71	+0.3
3,659,240	-		DZA65_RS16935	0.74	+1.5
3,659,240	-		DZA65_RS16935	0.74	-0.8
3,659,240	-		DZA65_RS16935	0.74	-1.1
3,659,240	-		DZA65_RS16935	0.74	-0.5
3,659,240	-		DZA65_RS16935	0.74	+0.7
3,659,375	+		DZA65_RS16935	0.83	-0.5
3,659,375	+		DZA65_RS16935	0.83	+0.7
3,659,375	+		DZA65_RS16935	0.83	+0.9
3,659,375	+		DZA65_RS16935	0.83	-2.9
3,659,375	+		DZA65_RS16935	0.83	+0.3
3,659,376	-		DZA65_RS16935	0.83	+0.7
3,659,376	-		DZA65_RS16935	0.83	-0.5
3,659,376	-		DZA65_RS16935	0.83	+0.5
3,659,376	-		DZA65_RS16935	0.83	-0.8
3,659,376	-				+0.7
3,659,376	-		DZA65_RS16935	0.83	+1.1
3,659,381	+		DZA65_RS16935	0.83	+0.8
3,659,382	-		DZA65_RS16935	0.83	+1.5
3,659,382	-		DZA65_RS16935	0.83	-1.7
3,659,395	+		DZA65_RS16935	0.84	-0.5
3,659,445	+		DZA65_RS16935	0.87	+0.5
3,659,446	-		DZA65_RS16935	0.87	+0.2
3,659,446	-		DZA65_RS16935	0.87	+0.6
3,659,476	+		DZA65_RS16935	0.89	-0.3
3,659,476	+		DZA65_RS16935	0.89	-1.5
3,659,476	+		DZA65_RS16935	0.89	+1.3
3,659,476	+		DZA65_RS16935	0.89	-0.1
3,659,477	-		DZA65_RS16935	0.89	-1.5
3,659,477	-		DZA65_RS16935	0.89	-0.5
3,659,477	-		DZA65_RS16935	0.89	-0.2
3,659,477	-		DZA65_RS16935	0.89	+0.7
3,659,477	-		DZA65_RS16935	0.89	+0.5
3,659,477	-		DZA65_RS16935	0.89	-0.6
3,659,477	-		DZA65_RS16935	0.89	-1.8
3,659,477	-		DZA65_RS16935	0.89	-0.5
3,659,479	+		DZA65_RS16935	0.89	-0.1
3,659,479	+		DZA65_RS16935	0.89	-0.1
3,659,479	+		DZA65_RS16935	0.89	+0.6
3,659,480	-		DZA65_RS16935	0.89	-0.5
3,659,480	-		DZA65_RS16935	0.89	+1.5
3,659,480	-		DZA65_RS16935	0.89	+1.3
3,659,480	-		DZA65_RS16935	0.89	-2.3
3,659,516	+				+0.5
3,659,516	+				+0.5
3,659,517	-				+0.5
3,659,520	+				+1.5
3,659,520	+				+0.0
3,659,520	+				-0.7
3,659,521	-				-1.3
3,659,590	+				+0.7
3,659,590	+				-2.3
3,659,590	+				-1.1
3,659,590	+				-0.7
3,659,591	-				-1.1
3,659,591	-				-0.1
3,659,728	+				-0.5
3,659,735	+				-1.4
3,659,736	-				+2.1
3,659,736	-				-0.1
3,659,736	-				-1.3
3,659,739	+				+1.5
3,659,740	-				-1.8
3,659,750	+				-1.1
3,659,759	-				+0.7
3,659,762	-				+0.9
3,659,769	+				-0.5
3,659,770	-				+1.3
3,659,773	+				-0.8
3,659,778	-				+0.9
3,659,813	+				-1.0
3,660,001	+		DZA65_RS16940	0.32	+0.7
3,660,001	+		DZA65_RS16940	0.32	+1.5
3,660,002	-		DZA65_RS16940	0.32	+0.5
3,660,075	+		DZA65_RS16940	0.42	-0.1
3,660,076	-		DZA65_RS16940	0.42	+0.5
3,660,076	-		DZA65_RS16940	0.42	-0.1
3,660,078	-		DZA65_RS16940	0.42	+0.6
3,660,128	+		DZA65_RS16940	0.49	-0.9
3,660,128	+		DZA65_RS16940	0.49	+0.0
3,660,129	-		DZA65_RS16940	0.49	+1.1
3,660,129	-		DZA65_RS16940	0.49	+1.2
3,660,129	-		DZA65_RS16940	0.49	-1.1
3,660,138	+		DZA65_RS16940	0.50	-0.5
3,660,163	+		DZA65_RS16940	0.54	+0.9
3,660,179	+		DZA65_RS16940	0.56	-1.3
3,660,179	+		DZA65_RS16940	0.56	+2.1
3,660,180	-		DZA65_RS16940	0.56	-0.2
3,660,189	+		DZA65_RS16940	0.57	-0.8
3,660,240	+		DZA65_RS16940	0.64	+1.1
3,660,240	+		DZA65_RS16940	0.64	-1.3
3,660,240	+		DZA65_RS16940	0.64	-2.9
3,660,240	+		DZA65_RS16940	0.64	-0.1
3,660,241	-		DZA65_RS16940	0.64	-2.2
3,660,241	-		DZA65_RS16940	0.64	+0.5
3,660,241	-		DZA65_RS16940	0.64	-2.2
3,660,463	-				-1.3
3,660,463	-				+0.5
3,660,489	+				-1.3
3,660,489	+				-1.8
3,660,489	+				+0.2
3,660,489	+				-0.8
3,660,490	-				+2.2
3,660,490	-				+0.7
3,660,490	-				+1.4
3,660,490	-				+1.5
3,660,490	-				+2.5
3,660,490	-				-0.1
3,660,520	+				-0.3
3,660,521	-				-0.7
3,660,521	-				+0.0
3,660,521	-				-1.8
3,660,521	-				-0.8
3,660,537	+				+0.2
3,660,542	+				-0.1
3,660,542	+				+1.5
3,660,542	+				-1.4
3,660,542	+				-1.3
3,660,542	+				+0.9
3,660,542	+				-0.3
3,660,542	+				-2.0
3,660,543	-				-0.2
3,660,543	-				+3.5
3,660,543	-				-1.3
3,660,543	-				+0.9
3,660,543	-				-0.3
3,660,543	-				+0.1
3,660,543	-				-0.8
3,660,612	+				+0.2
3,660,612	+				-0.8
3,660,613	-				-0.8
3,660,613	-				-1.1
3,660,613	-				-0.5
3,660,613	-				-0.4
3,660,614	+				-1.5
3,660,615	-				-1.2
3,660,615	-				+1.5
3,660,615	-				-1.1
3,660,636	+				+1.1
3,660,636	+				-1.1
3,660,636	+				+2.5
3,660,637	-				-2.3
3,660,637	-				-0.0
3,660,637	-				-1.8
3,660,637	-				-2.4
3,660,637	-				-2.0
3,660,637	-				-0.8
3,660,637	-				-1.1
3,660,637	-				-2.8
3,660,772	+				-3.2
3,660,773	-				-2.5
3,660,814	-		DZA65_RS16945	0.13	-1.3
3,660,987	+		DZA65_RS16945	0.25	+0.2
3,660,987	+		DZA65_RS16945	0.25	-0.8
3,660,988	-		DZA65_RS16945	0.26	-1.1
3,660,988	-		DZA65_RS16945	0.26	-2.7
3,660,988	-		DZA65_RS16945	0.26	-1.1
3,660,988	-		DZA65_RS16945	0.26	-1.3
3,660,988	-		DZA65_RS16945	0.26	-0.1
3,661,059	+		DZA65_RS16945	0.31	-1.1
3,661,059	+		DZA65_RS16945	0.31	-1.5
3,661,059	+		DZA65_RS16945	0.31	-0.7
3,661,059	+		DZA65_RS16945	0.31	-0.1
3,661,059	+		DZA65_RS16945	0.31	-0.8
3,661,059	+		DZA65_RS16945	0.31	-0.5
3,661,060	-		DZA65_RS16945	0.31	-1.1
3,661,060	-		DZA65_RS16945	0.31	+0.2
3,661,124	+		DZA65_RS16945	0.36	-0.8
3,661,124	+		DZA65_RS16945	0.36	-1.7
3,661,124	+		DZA65_RS16945	0.36	-2.9
3,661,124	+		DZA65_RS16945	0.36	-3.0
3,661,125	-		DZA65_RS16945	0.36	-0.1
3,661,125	-		DZA65_RS16945	0.36	+0.7
3,661,160	+		DZA65_RS16945	0.38	-0.5
3,661,161	-		DZA65_RS16945	0.38	-1.3
3,661,227	-		DZA65_RS16945	0.43	-0.8
3,661,270	+		DZA65_RS16945	0.46	-1.3
3,661,270	+		DZA65_RS16945	0.46	-1.8
3,661,270	+		DZA65_RS16945	0.46	-2.3
3,661,270	+		DZA65_RS16945	0.46	-0.1
3,661,271	-		DZA65_RS16945	0.46	-0.8
3,661,271	-		DZA65_RS16945	0.46	-2.2
3,661,271	-		DZA65_RS16945	0.46	-0.3
3,661,271	-		DZA65_RS16945	0.46	+0.5
3,661,271	-		DZA65_RS16945	0.46	-1.3
3,661,271	-		DZA65_RS16945	0.46	-1.7
3,661,317	+		DZA65_RS16945	0.50	+0.5
3,661,317	+		DZA65_RS16945	0.50	-1.2
3,661,318	-		DZA65_RS16945	0.50	-1.5
3,661,366	+		DZA65_RS16945	0.54	-1.1
3,661,366	+		DZA65_RS16945	0.54	-2.5
3,661,367	-		DZA65_RS16945	0.54	-1.5
3,661,367	-		DZA65_RS16945	0.54	+1.1
3,661,367	-		DZA65_RS16945	0.54	-1.5
3,661,384	+		DZA65_RS16945	0.55	-0.5
3,661,384	+		DZA65_RS16945	0.55	+1.1
3,661,385	-		DZA65_RS16945	0.55	-1.8
3,661,394	+		DZA65_RS16945	0.56	+0.2
3,661,394	+		DZA65_RS16945	0.56	-0.1
3,661,409	+		DZA65_RS16945	0.57	-0.8
3,661,410	-		DZA65_RS16945	0.57	-2.6
3,661,410	-		DZA65_RS16945	0.57	-1.1
3,661,470	+		DZA65_RS16945	0.61	-3.0
3,661,470	+		DZA65_RS16945	0.61	-2.2
3,661,470	+		DZA65_RS16945	0.61	-1.3
3,661,470	+		DZA65_RS16945	0.61	+1.5
3,661,470	+		DZA65_RS16945	0.61	-0.2
3,661,502	+		DZA65_RS16945	0.64	-0.5
3,661,502	+		DZA65_RS16945	0.64	-0.3
3,661,503	-		DZA65_RS16945	0.64	-0.8