Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16445

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,561,974	+		DZA65_RS16435	0.79	-0.3
3,561,974	+		DZA65_RS16435	0.79	-2.5
3,561,974	+		DZA65_RS16435	0.79	-0.1
3,561,975	-		DZA65_RS16435	0.79	+3.1
3,562,080	+		DZA65_RS16435	0.90	-1.3
3,562,081	-		DZA65_RS16435	0.90	-0.8
3,562,116	+				+0.5
3,562,130	-				-1.1
3,562,165	-				+2.1
3,562,198	+				+0.7
3,562,198	+				-2.7
3,562,198	+				-1.3
3,562,198	+				-0.5
3,562,198	+				+1.3
3,562,199	-				-0.3
3,562,199	-				-0.1
3,562,207	+				-0.7
3,562,209	+				-0.8
3,562,210	-				-0.1
3,562,210	-				+0.9
3,562,210	-				-0.1
3,562,210	-				-0.6
3,562,210	-				+0.2
3,562,210	-				+0.2
3,562,227	-				+1.5
3,562,227	-				+1.5
3,562,250	+				+0.8
3,562,251	-				-2.6
3,562,339	+		DZA65_RS16440	0.21	+2.5
3,562,394	+		DZA65_RS16440	0.30	-0.2
3,562,394	+		DZA65_RS16440	0.30	-1.3
3,562,395	-		DZA65_RS16440	0.30	+1.7
3,562,395	-		DZA65_RS16440	0.30	-0.5
3,562,395	-		DZA65_RS16440	0.30	-0.5
3,562,395	-		DZA65_RS16440	0.30	-1.1
3,562,587	+		DZA65_RS16440	0.59	-0.9
3,562,634	-		DZA65_RS16440	0.66	-1.7
3,562,634	-		DZA65_RS16440	0.66	+2.4
3,562,862	+				+2.5
3,562,862	+				-1.7
3,562,862	+				+0.4
3,562,862	+				-0.7
3,562,862	+				+3.3
3,562,863	-				+2.1
3,562,863	-				+1.5
3,562,863	-				+0.7
3,562,863	-				-1.1
3,562,864	+				-0.1
3,562,864	+				+2.2
3,562,864	+				-1.1
3,562,864	+				-0.5
3,562,864	+				+0.6
3,562,864	+				-2.3
3,562,864	+				-1.1
3,562,864	+				+1.4
3,562,865	-				-1.7
3,562,865	-				+0.2
3,562,865	-				+0.2
3,562,865	-				-0.6
3,562,865	-				+0.3
3,562,865	-				+1.5
3,562,865	-				+0.9
3,562,865	-				+0.3
3,562,899	-				-0.8
3,562,904	+				-0.3
3,562,948	+				-1.5
3,562,976	+				-1.4
3,562,976	+				-2.0
3,562,977	-				-1.3
3,562,977	-				-0.1
3,562,992	-				-0.0
3,563,009	+		DZA65_RS16445	0.11	-0.3
3,563,043	-		DZA65_RS16445	0.16	-0.4
3,563,099	-		DZA65_RS16445	0.22	-0.9
3,563,099	-		DZA65_RS16445	0.22	-1.1
3,563,099	-		DZA65_RS16445	0.22	+2.9
3,563,165	-		DZA65_RS16445	0.31	-0.1
3,563,196	+		DZA65_RS16445	0.34	+0.2
3,563,196	+		DZA65_RS16445	0.34	+0.3
3,563,197	-		DZA65_RS16445	0.34	+0.3
3,563,197	-		DZA65_RS16445	0.34	-1.8
3,563,240	+		DZA65_RS16445	0.40	-2.1
3,563,241	-		DZA65_RS16445	0.40	-0.8
3,563,241	-		DZA65_RS16445	0.40	+0.6
3,563,323	+		DZA65_RS16445	0.50	+1.1
3,563,324	-		DZA65_RS16445	0.50	-1.2
3,563,324	-		DZA65_RS16445	0.50	-1.5
3,563,338	+		DZA65_RS16445	0.52	-1.3
3,563,338	+		DZA65_RS16445	0.52	-0.0
3,563,338	+		DZA65_RS16445	0.52	-0.1
3,563,338	+		DZA65_RS16445	0.52	+1.5
3,563,338	+		DZA65_RS16445	0.52	-0.1
3,563,339	-		DZA65_RS16445	0.52	+2.0
3,563,339	-		DZA65_RS16445	0.52	+0.6
3,563,341	+		DZA65_RS16445	0.52	+0.5
3,563,455	+		DZA65_RS16445	0.66	+2.2
3,563,491	+		DZA65_RS16445	0.70	+0.5
3,563,491	+		DZA65_RS16445	0.70	-0.0
3,563,491	+		DZA65_RS16445	0.70	+0.8
3,563,491	+		DZA65_RS16445	0.70	-1.2
3,563,491	+		DZA65_RS16445	0.70	+1.2
3,563,491	+		DZA65_RS16445	0.70	-1.3
3,563,491	+		DZA65_RS16445	0.70	-0.1
3,563,491	+				-0.8
3,563,491	+		DZA65_RS16445	0.70	+0.7
3,563,491	+		DZA65_RS16445	0.70	-1.1
3,563,491	+		DZA65_RS16445	0.70	-0.5
3,563,492	-		DZA65_RS16445	0.71	+1.5
3,563,492	-		DZA65_RS16445	0.71	-2.0
3,563,492	-		DZA65_RS16445	0.71	-0.8
3,563,492	-		DZA65_RS16445	0.71	-0.1
3,563,492	-		DZA65_RS16445	0.71	-0.6
3,563,492	-		DZA65_RS16445	0.71	-0.5
3,563,492	-		DZA65_RS16445	0.71	-0.2
3,563,492	-		DZA65_RS16445	0.71	+0.5
3,563,492	-		DZA65_RS16445	0.71	-0.9
3,563,492	-		DZA65_RS16445	0.71	-1.0
3,563,492	-		DZA65_RS16445	0.71	+0.7
3,563,492	-		DZA65_RS16445	0.71	-0.1
3,563,492	-		DZA65_RS16445	0.71	-1.7
3,563,492	-		DZA65_RS16445	0.71	-1.5
3,563,492	-		DZA65_RS16445	0.71	+0.3
3,563,511	+		DZA65_RS16445	0.73	-1.7
3,563,511	+		DZA65_RS16445	0.73	-0.8
3,563,511	+		DZA65_RS16445	0.73	+0.3
3,563,511	+		DZA65_RS16445	0.73	-1.3
3,563,511	+		DZA65_RS16445	0.73	-0.7
3,563,511	+		DZA65_RS16445	0.73	+0.3
3,563,511	+		DZA65_RS16445	0.73	-1.1
3,563,512	-		DZA65_RS16445	0.73	+0.8
3,563,512	-		DZA65_RS16445	0.73	-1.7
3,563,513	+		DZA65_RS16445	0.73	-1.5
3,563,513	+		DZA65_RS16445	0.73	-2.2
3,563,513	+		DZA65_RS16445	0.73	-0.1
3,563,513	+		DZA65_RS16445	0.73	-0.8
3,563,513	+		DZA65_RS16445	0.73	-0.0
3,563,513	+		DZA65_RS16445	0.73	+1.5
3,563,514	-		DZA65_RS16445	0.73	-0.8
3,563,514	-		DZA65_RS16445	0.73	-0.9
3,563,514	-		DZA65_RS16445	0.73	+0.1
3,563,514	-		DZA65_RS16445	0.73	-1.1
3,563,514	-		DZA65_RS16445	0.73	-1.1
3,563,693	-				-1.1
3,563,779	+		DZA65_RS16450	0.17	+0.5
3,563,779	+		DZA65_RS16450	0.17	-0.5
3,563,779	+				-1.1
3,563,779	+		DZA65_RS16450	0.17	-0.3
3,563,780	-		DZA65_RS16450	0.18	-0.5
3,563,780	-				-0.1
3,563,780	-		DZA65_RS16450	0.18	+0.9
3,563,802	-		DZA65_RS16450	0.25	+0.2
3,563,821	-		DZA65_RS16450	0.31	-0.1
3,563,856	+		DZA65_RS16450	0.42	+1.5
3,563,856	+		DZA65_RS16450	0.42	+0.7
3,563,856	+		DZA65_RS16450	0.42	+1.5
3,563,856	+		DZA65_RS16450	0.42	-2.0
3,563,857	-		DZA65_RS16450	0.42	-0.1
3,563,857	-		DZA65_RS16450	0.42	-0.4
3,563,857	-		DZA65_RS16450	0.42	+1.0
3,563,857	-		DZA65_RS16450	0.42	-0.2
3,563,857	-		DZA65_RS16450	0.42	+0.6
3,564,061	+				+1.5
3,564,061	+				-2.0
3,564,062	-				-2.1
3,564,062	-				+0.3
3,564,062	-				-2.2
3,564,064	+				-0.8
3,564,064	+				-0.7
3,564,064	+				-0.6
3,564,064	+				-0.8
3,564,065	-				-0.2
3,564,065	-				-0.8
3,564,230	+		DZA65_RS16455	0.12	+0.3
3,564,241	+		DZA65_RS16455	0.12	-2.6
3,564,242	-		DZA65_RS16455	0.12	+0.9
3,564,242	-		DZA65_RS16455	0.12	+2.1
3,564,260	-		DZA65_RS16455	0.13	-1.2
3,564,387	+		DZA65_RS16455	0.21	-0.1
3,564,387	+		DZA65_RS16455	0.21	+0.9
3,564,387	+		DZA65_RS16455	0.21	+0.3
3,564,387	+		DZA65_RS16455	0.21	+0.5
3,564,388	-		DZA65_RS16455	0.21	-0.1
3,564,388	-		DZA65_RS16455	0.21	-0.2
3,564,388	-		DZA65_RS16455	0.21	+0.6
3,564,388	-		DZA65_RS16455	0.21	+0.1
3,564,388	-		DZA65_RS16455	0.21	-1.1
3,564,388	-		DZA65_RS16455	0.21	-0.5
3,564,388	-		DZA65_RS16455	0.21	-1.7
3,564,388	-		DZA65_RS16455	0.21	+1.5
3,564,416	+		DZA65_RS16455	0.23	+0.6
3,564,416	+		DZA65_RS16455	0.23	+0.3
3,564,417	-		DZA65_RS16455	0.23	-1.3
3,564,417	-		DZA65_RS16455	0.23	-0.5
3,564,417	-		DZA65_RS16455	0.23	+0.9
3,564,417	-		DZA65_RS16455	0.23	-1.3
3,564,530	+		DZA65_RS16455	0.30	-2.1
3,564,531	-		DZA65_RS16455	0.30	+0.0
3,564,531	-		DZA65_RS16455	0.30	+0.1
3,564,643	+		DZA65_RS16455	0.36	+0.9
3,564,643	+		DZA65_RS16455	0.36	+1.2
3,564,643	+		DZA65_RS16455	0.36	-0.7
3,564,644	-		DZA65_RS16455	0.36	+0.5
3,564,644	-		DZA65_RS16455	0.36	+1.2
3,564,644	-		DZA65_RS16455	0.36	+0.5
3,564,644	-		DZA65_RS16455	0.36	-0.5
3,564,644	-		DZA65_RS16455	0.36	-1.1
3,564,662	+		DZA65_RS16455	0.38	-2.8
3,564,662	+		DZA65_RS16455	0.38	-2.1
3,564,662	+		DZA65_RS16455	0.38	+0.9
3,564,662	+		DZA65_RS16455	0.38	+0.1
3,564,691	-		DZA65_RS16455	0.39	-2.6
3,564,691	-		DZA65_RS16455	0.39	+0.2
3,564,700	+		DZA65_RS16455	0.40	-1.3
3,564,700	+		DZA65_RS16455	0.40	+1.3
3,564,730	+		DZA65_RS16455	0.42	-0.5