Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15785

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,428,080	+		DZA65_RS15780	0.54	+0.2
3,428,089	+		DZA65_RS15780	0.54	+1.2
3,428,089	+		DZA65_RS15780	0.54	+0.1
3,428,089	+		DZA65_RS15780	0.54	+1.9
3,428,089	+		DZA65_RS15780	0.54	-0.3
3,428,089	+		DZA65_RS15780	0.54	-1.7
3,428,089	+		DZA65_RS15780	0.54	-0.3
3,428,089	+		DZA65_RS15780	0.54	-0.0
3,428,089	+		DZA65_RS15780	0.54	-0.8
3,428,089	+				-1.5
3,428,089	+		DZA65_RS15780	0.54	-0.5
3,428,089	+		DZA65_RS15780	0.54	+0.7
3,428,090	-		DZA65_RS15780	0.54	+0.0
3,428,090	-		DZA65_RS15780	0.54	-0.3
3,428,090	-		DZA65_RS15780	0.54	-0.9
3,428,090	-		DZA65_RS15780	0.54	-1.8
3,428,090	-		DZA65_RS15780	0.54	-1.7
3,428,090	-		DZA65_RS15780	0.54	+0.0
3,428,090	-		DZA65_RS15780	0.54	+1.5
3,428,090	-		DZA65_RS15780	0.54	-1.7
3,428,090	-		DZA65_RS15780	0.54	+1.2
3,428,090	-		DZA65_RS15780	0.54	+1.5
3,428,090	-		DZA65_RS15780	0.54	+2.1
3,428,090	-		DZA65_RS15780	0.54	-0.6
3,428,091	+		DZA65_RS15780	0.54	-1.0
3,428,091	+		DZA65_RS15780	0.54	-0.7
3,428,091	+		DZA65_RS15780	0.54	-0.2
3,428,092	-		DZA65_RS15780	0.54	-0.4
3,428,124	+		DZA65_RS15780	0.57	-0.5
3,428,124	+		DZA65_RS15780	0.57	+1.8
3,428,124	+				+0.3
3,428,124	+		DZA65_RS15780	0.57	+1.2
3,428,124	+		DZA65_RS15780	0.57	-0.6
3,428,124	+		DZA65_RS15780	0.57	+0.6
3,428,125	-		DZA65_RS15780	0.57	-1.2
3,428,125	-		DZA65_RS15780	0.57	-1.7
3,428,125	-		DZA65_RS15780	0.57	-1.2
3,428,125	-		DZA65_RS15780	0.57	+0.5
3,428,125	-		DZA65_RS15780	0.57	-0.8
3,428,128	-		DZA65_RS15780	0.57	+0.0
3,428,150	+		DZA65_RS15780	0.59	-1.3
3,428,193	+		DZA65_RS15780	0.63	+0.8
3,428,193	+		DZA65_RS15780	0.63	-1.1
3,428,194	-		DZA65_RS15780	0.63	+0.5
3,428,205	-		DZA65_RS15780	0.63	-1.3
3,428,205	-		DZA65_RS15780	0.63	-2.1
3,428,241	+		DZA65_RS15780	0.66	+1.1
3,428,242	-		DZA65_RS15780	0.66	+0.3
3,428,280	+		DZA65_RS15780	0.69	-0.4
3,428,280	+		DZA65_RS15780	0.69	-2.2
3,428,290	+		DZA65_RS15780	0.70	-0.3
3,428,473	-		DZA65_RS15780	0.85	-0.5
3,428,505	+		DZA65_RS15780	0.87	-0.8
3,428,505	+		DZA65_RS15780	0.87	-0.8
3,428,506	-		DZA65_RS15780	0.87	-1.3
3,428,589	+				-0.6
3,428,589	+				-0.5
3,428,589	+				+1.3
3,428,589	+				+0.2
3,428,589	+				-0.2
3,428,589	+				+0.9
3,428,589	+				-1.1
3,428,589	+				-0.1
3,428,589	+				+1.0
3,428,591	+				+0.9
3,428,592	-				+1.2
3,428,734	-				-0.3
3,428,786	+				-1.5
3,428,828	+				-1.3
3,428,891	+				-1.8
3,428,983	+				-0.4
3,428,989	+				-1.8
3,429,020	+				-0.4
3,429,020	+				+0.8
3,429,020	+				-0.1
3,429,020	+				+0.9
3,429,020	+				-0.7
3,429,021	-				-0.8
3,429,021	-				+1.5
3,429,072	+				-0.1
3,429,072	+				-0.1
3,429,073	-				-0.3
3,429,073	-				-2.1
3,429,175	-		DZA65_RS15785	0.15	-0.0
3,429,175	-		DZA65_RS15785	0.15	-0.2
3,429,259	+		DZA65_RS15785	0.22	+0.9
3,429,259	+		DZA65_RS15785	0.22	-0.1
3,429,268	+		DZA65_RS15785	0.23	+1.6
3,429,269	-		DZA65_RS15785	0.23	+1.5
3,429,276	+		DZA65_RS15785	0.24	+2.1
3,429,277	-				+0.5
3,429,301	+		DZA65_RS15785	0.26	-0.2
3,429,309	+		DZA65_RS15785	0.27	+1.0
3,429,309	+		DZA65_RS15785	0.27	+0.5
3,429,309	+		DZA65_RS15785	0.27	-1.6
3,429,310	-		DZA65_RS15785	0.27	+0.6
3,429,456	-		DZA65_RS15785	0.40	-1.1
3,429,470	+		DZA65_RS15785	0.41	+0.8
3,429,470	+		DZA65_RS15785	0.41	+0.2
3,429,470	+		DZA65_RS15785	0.41	+0.3
3,429,470	+		DZA65_RS15785	0.41	-0.5
3,429,471	-		DZA65_RS15785	0.42	-0.9
3,429,471	-				+0.2
3,429,471	-		DZA65_RS15785	0.42	-0.5
3,429,471	-		DZA65_RS15785	0.42	-2.4
3,429,471	-		DZA65_RS15785	0.42	+0.7
3,429,567	+		DZA65_RS15785	0.50	-1.7
3,429,574	+		DZA65_RS15785	0.51	+0.8
3,429,574	+		DZA65_RS15785	0.51	-0.7
3,429,574	+		DZA65_RS15785	0.51	+0.8
3,429,574	+		DZA65_RS15785	0.51	-2.9
3,429,574	+		DZA65_RS15785	0.51	-0.9
3,429,574	+		DZA65_RS15785	0.51	-0.1
3,429,574	+		DZA65_RS15785	0.51	-0.8
3,429,575	-		DZA65_RS15785	0.51	+0.2
3,429,575	-		DZA65_RS15785	0.51	+0.9
3,429,575	-		DZA65_RS15785	0.51	+1.5
3,429,575	-		DZA65_RS15785	0.51	-0.4
3,429,575	-		DZA65_RS15785	0.51	-0.2
3,429,575	-		DZA65_RS15785	0.51	-0.5
3,429,575	-		DZA65_RS15785	0.51	-0.1
3,429,575	-		DZA65_RS15785	0.51	+0.7
3,429,575	-		DZA65_RS15785	0.51	-0.3
3,429,575	-		DZA65_RS15785	0.51	+0.2
3,429,575	-		DZA65_RS15785	0.51	-1.1
3,429,575	-		DZA65_RS15785	0.51	+0.5
3,429,575	-		DZA65_RS15785	0.51	+2.1
3,429,575	-		DZA65_RS15785	0.51	-1.3
3,429,629	+		DZA65_RS15785	0.56	+0.5
3,429,629	+		DZA65_RS15785	0.56	-0.1
3,429,673	+				-1.5
3,429,673	+		DZA65_RS15785	0.60	+0.8
3,429,674	-		DZA65_RS15785	0.60	-1.0
3,429,674	-		DZA65_RS15785	0.60	-2.0
3,429,676	+		DZA65_RS15785	0.60	+0.2
3,429,676	+		DZA65_RS15785	0.60	-2.3
3,429,676	+		DZA65_RS15785	0.60	+0.2
3,429,676	+		DZA65_RS15785	0.60	-0.5
3,429,676	+		DZA65_RS15785	0.60	+0.3
3,429,676	+		DZA65_RS15785	0.60	-0.5
3,429,677	-		DZA65_RS15785	0.60	+2.0
3,429,677	-		DZA65_RS15785	0.60	-0.2
3,429,677	-		DZA65_RS15785	0.60	-1.9
3,429,677	-		DZA65_RS15785	0.60	-1.1
3,429,677	-				+0.2
3,429,677	-		DZA65_RS15785	0.60	+0.8
3,429,946	+		DZA65_RS15785	0.84	+0.1
3,429,946	+		DZA65_RS15785	0.84	-2.3
3,429,946	+		DZA65_RS15785	0.84	-2.0
3,429,946	+		DZA65_RS15785	0.84	+0.8
3,429,947	-		DZA65_RS15785	0.84	-0.4
3,429,947	-		DZA65_RS15785	0.84	-0.5
3,429,947	-		DZA65_RS15785	0.84	+0.5
3,429,965	-		DZA65_RS15785	0.86	-1.3
3,430,149	-				-1.9
3,430,188	+				-0.1
3,430,188	+				+1.5
3,430,189	-				-1.1
3,430,189	-				+2.5
3,430,327	+				+0.9
3,430,335	-				+0.9
3,430,337	+				+0.1
3,430,338	-				-0.1
3,430,338	-				-0.8
3,430,354	-				+1.5
3,430,360	+				+0.5
3,430,361	-				+1.9
3,430,361	-				-0.9
3,430,392	+				+1.2
3,430,446	+				+0.3
3,430,447	-				-2.5
3,430,450	+				+0.0
3,430,450	+				-0.7
3,430,554	+		DZA65_RS15795	0.37	-0.1
3,430,625	-		DZA65_RS15795	0.61	-0.1
3,430,768	+				-1.1
3,430,768	+				+1.5
3,430,769	-				-1.8
3,430,769	-				+0.1
3,430,772	+				-1.8
3,430,772	+				+0.3
3,430,773	-				-1.2
3,430,796	+				+0.8
3,430,807	+				-0.1
3,430,816	-				-1.6
3,430,817	+				-0.7
3,430,817	+				-0.0
3,430,817	+				+0.3
3,430,817	+				-1.5
3,430,818	-				+2.8
3,430,818	-				-0.5
3,430,818	-				-2.1
3,430,818	-				-0.8
3,430,821	+				+0.0
3,430,822	-				-2.1
3,430,825	+				-0.8
3,430,826	-				-1.3
3,430,826	-				-1.7
3,430,845	+				+0.5
3,430,845	+				+0.4
3,430,846	-				-0.4
3,430,846	-				-2.2
3,430,853	+				+0.6
3,430,854	-				-1.5
3,430,854	-				-2.4
3,430,856	-				-0.1
3,430,864	+				+0.4
3,430,865	-				-1.3
3,430,895	-				-1.8
3,430,987	+				+1.5
3,430,987	+				-2.0
3,430,987	+				+0.1
3,430,987	+				+0.8
3,430,987	+				-1.5
3,430,987	+				+0.5
3,430,988	-				+1.7
3,431,095	+				+0.9