Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14095

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,022,302	+		DZA65_RS14085	0.72	-2.4
3,022,302	+		DZA65_RS14085	0.72	-2.5
3,022,303	-		DZA65_RS14085	0.72	-2.8
3,022,303	-		DZA65_RS14085	0.72	-1.9
3,022,303	-		DZA65_RS14085	0.72	-2.9
3,022,305	+		DZA65_RS14085	0.73	-1.4
3,022,324	+		DZA65_RS14085	0.75	-1.4
3,022,324	+		DZA65_RS14085	0.75	-2.1
3,022,324	+		DZA65_RS14085	0.75	-1.8
3,022,324	+		DZA65_RS14085	0.75	-1.6
3,022,324	+		DZA65_RS14085	0.75	-2.4
3,022,324	+		DZA65_RS14085	0.75	-0.2
3,022,324	+		DZA65_RS14085	0.75	-1.9
3,022,324	+		DZA65_RS14085	0.75	-3.0
3,022,324	+		DZA65_RS14085	0.75	-1.1
3,022,324	+		DZA65_RS14085	0.75	-1.2
3,022,324	+		DZA65_RS14085	0.75	-0.2
3,022,324	+		DZA65_RS14085	0.75	-0.9
3,022,325	-		DZA65_RS14085	0.75	+0.1
3,022,325	-		DZA65_RS14085	0.75	-0.6
3,022,325	-		DZA65_RS14085	0.75	-1.8
3,022,325	-		DZA65_RS14085	0.75	-0.6
3,022,325	-		DZA65_RS14085	0.75	-1.4
3,022,325	-		DZA65_RS14085	0.75	-1.2
3,022,325	-		DZA65_RS14085	0.75	-3.3
3,022,325	-		DZA65_RS14085	0.75	-2.1
3,022,325	-		DZA65_RS14085	0.75	-2.4
3,022,325	-		DZA65_RS14085	0.75	-3.3
3,022,325	-		DZA65_RS14085	0.75	-2.2
3,022,325	-				-2.3
3,022,326	+		DZA65_RS14085	0.75	-2.3
3,022,337	+		DZA65_RS14085	0.76	-2.3
3,022,337	+		DZA65_RS14085	0.76	-1.6
3,022,338	-		DZA65_RS14085	0.76	-1.8
3,022,338	-		DZA65_RS14085	0.76	-1.2
3,022,338	-		DZA65_RS14085	0.76	-3.0
3,022,338	-		DZA65_RS14085	0.76	-1.4
3,022,338	-		DZA65_RS14085	0.76	-0.6
3,022,338	-		DZA65_RS14085	0.76	-1.3
3,022,339	+		DZA65_RS14085	0.76	+0.1
3,022,340	-		DZA65_RS14085	0.77	-1.6
3,022,404	-		DZA65_RS14085	0.84	-3.6
3,022,412	+		DZA65_RS14085	0.85	-0.2
3,022,412	+		DZA65_RS14085	0.85	-3.0
3,022,413	-		DZA65_RS14085	0.85	-2.5
3,022,413	-		DZA65_RS14085	0.85	-1.4
3,022,413	-		DZA65_RS14085	0.85	-1.8
3,022,413	-		DZA65_RS14085	0.85	-3.0
3,022,413	-		DZA65_RS14085	0.85	-3.4
3,022,413	-				-2.1
3,022,439	+		DZA65_RS14085	0.88	-4.0
3,022,439	+		DZA65_RS14085	0.88	-0.6
3,022,462	+				-1.4
3,022,462	+				-0.9
3,022,462	+				-2.7
3,022,463	-				-1.9
3,022,463	-				-2.2
3,022,463	-				-1.9
3,022,506	+				-2.7
3,022,506	+				-3.2
3,022,506	+				-1.2
3,022,506	+				-3.7
3,022,506	+				-4.3
3,022,506	+				-0.9
3,022,506	+				-0.9
3,022,506	+				+0.4
3,022,506	+				-1.3
3,022,507	-				+1.4
3,022,507	-				-2.7
3,022,507	-				-2.7
3,022,507	-				-0.6
3,022,507	-				-1.9
3,022,507	-				-1.2
3,022,508	+				-2.8
3,022,508	+				-4.2
3,022,508	+				-1.2
3,022,508	+				-2.3
3,022,508	+				-3.4
3,022,509	-				-2.5
3,022,515	+				-3.7
3,022,515	+				-2.1
3,022,515	+				-0.4
3,022,515	+				-2.9
3,022,515	+				-3.8
3,022,516	-				-0.2
3,022,516	-				-0.2
3,022,516	-				-1.8
3,022,517	+				-2.1
3,022,517	+				-2.7
3,022,528	+				-0.9
3,022,536	+				-1.8
3,022,536	+				-4.7
3,022,537	-				-2.2
3,022,537	-				-1.2
3,022,537	-				-2.7
3,022,538	+				-3.8
3,022,538	+				-1.6
3,022,538	+				-2.9
3,022,539	-				-3.2
3,022,539	-				-1.4
3,022,559	-				-1.6
3,022,560	+				-1.4
3,022,560	+				-1.8
3,022,561	-				-1.9
3,022,561	-				+0.6
3,022,561	-				-1.1
3,022,561	-				-1.3
3,022,561	-				-1.7
3,022,561	-				-2.1
3,022,561	-				-1.6
3,022,564	+				-2.1
3,022,567	+				-0.9
3,022,568	-				-0.6
3,022,590	+				-1.8
3,022,591	-				-0.8
3,022,603	-				+0.1
3,022,720	+				-1.8
3,022,720	+				-3.4
3,022,720	+				-0.6
3,022,721	-				-2.7
3,022,721	-				-1.4
3,022,759	+		DZA65_RS14090	0.13	-0.6
3,022,760	-		DZA65_RS14090	0.14	-3.2
3,022,784	-		DZA65_RS14090	0.18	-1.4
3,022,784	-		DZA65_RS14090	0.18	-1.4
3,022,800	+		DZA65_RS14090	0.21	-1.6
3,022,800	+		DZA65_RS14090	0.21	-4.2
3,022,825	-		DZA65_RS14090	0.25	-1.4
3,022,827	+		DZA65_RS14090	0.25	-2.5
3,022,827	+		DZA65_RS14090	0.25	-1.8
3,022,827	+		DZA65_RS14090	0.25	-2.3
3,022,827	+		DZA65_RS14090	0.25	-1.2
3,022,828	-		DZA65_RS14090	0.25	-3.7
3,022,828	-		DZA65_RS14090	0.25	-1.8
3,022,828	-		DZA65_RS14090	0.25	-0.9
3,022,828	-		DZA65_RS14090	0.25	-2.8
3,022,828	-		DZA65_RS14090	0.25	-3.9
3,022,828	-		DZA65_RS14090	0.25	-2.7
3,022,828	-		DZA65_RS14090	0.25	-1.9
3,022,848	+		DZA65_RS14090	0.29	-1.9
3,022,848	+		DZA65_RS14090	0.29	-1.9
3,022,848	+		DZA65_RS14090	0.29	-2.4
3,022,848	+		DZA65_RS14090	0.29	-2.7
3,022,848	+		DZA65_RS14090	0.29	-2.8
3,022,848	+		DZA65_RS14090	0.29	+0.4
3,022,848	+		DZA65_RS14090	0.29	-1.2
3,022,848	+		DZA65_RS14090	0.29	-0.2
3,022,848	+		DZA65_RS14090	0.29	-2.8
3,022,848	+		DZA65_RS14090	0.29	-2.9
3,022,848	+		DZA65_RS14090	0.29	-2.1
3,022,848	+		DZA65_RS14090	0.29	-0.9
3,022,849	-		DZA65_RS14090	0.29	-1.2
3,022,849	-		DZA65_RS14090	0.29	+1.4
3,022,849	-		DZA65_RS14090	0.29	-2.5
3,022,849	-		DZA65_RS14090	0.29	-2.9
3,022,849	-		DZA65_RS14090	0.29	-3.7
3,022,849	-		DZA65_RS14090	0.29	-1.3
3,022,864	+		DZA65_RS14090	0.32	-0.9
3,022,864	+		DZA65_RS14090	0.32	-1.8
3,022,864	+		DZA65_RS14090	0.32	-2.6
3,022,864	+		DZA65_RS14090	0.32	+0.4
3,022,864	+		DZA65_RS14090	0.32	-2.7
3,022,864	+		DZA65_RS14090	0.32	-0.9
3,022,865	-		DZA65_RS14090	0.32	-3.7
3,022,865	-		DZA65_RS14090	0.32	-1.6
3,022,865	-		DZA65_RS14090	0.32	-2.2
3,022,865	-		DZA65_RS14090	0.32	+0.4
3,022,865	-		DZA65_RS14090	0.32	-2.6
3,022,865	-		DZA65_RS14090	0.32	-1.7
3,022,865	-		DZA65_RS14090	0.32	-2.1
3,022,865	-		DZA65_RS14090	0.32	-1.6
3,022,869	+		DZA65_RS14090	0.32	-3.8
3,022,955	+		DZA65_RS14090	0.47	-2.3
3,022,964	+		DZA65_RS14090	0.49	-2.2
3,022,965	-		DZA65_RS14090	0.49	-3.9
3,022,975	+		DZA65_RS14090	0.51	-2.1
3,022,976	-		DZA65_RS14090	0.51	-2.3
3,022,976	-		DZA65_RS14090	0.51	-0.4
3,022,992	+		DZA65_RS14090	0.54	-1.9
3,022,992	+		DZA65_RS14090	0.54	-4.4
3,022,993	-		DZA65_RS14090	0.54	-4.3
3,022,993	-		DZA65_RS14090	0.54	-2.4
3,022,993	-		DZA65_RS14090	0.54	-3.8
3,022,993	-		DZA65_RS14090	0.54	-2.4
3,023,021	+		DZA65_RS14090	0.59	-4.5
3,023,021	+		DZA65_RS14090	0.59	-3.5
3,023,022	-		DZA65_RS14090	0.59	-2.1
3,023,028	+		DZA65_RS14090	0.60	-3.2
3,023,028	+		DZA65_RS14090	0.60	-3.1
3,023,029	-		DZA65_RS14090	0.60	-2.2
3,023,030	+		DZA65_RS14090	0.60	-1.2
3,023,030	+		DZA65_RS14090	0.60	-2.3
3,023,030	+		DZA65_RS14090	0.60	+0.4
3,023,030	+		DZA65_RS14090	0.60	-1.4
3,023,030	+		DZA65_RS14090	0.60	-4.2
3,023,030	+		DZA65_RS14090	0.60	-0.9
3,023,030	+		DZA65_RS14090	0.60	-4.2
3,023,031	-		DZA65_RS14090	0.60	-2.7
3,023,031	-		DZA65_RS14090	0.60	-2.1
3,023,031	-		DZA65_RS14090	0.60	-2.5
3,023,031	-		DZA65_RS14090	0.60	-2.1
3,023,031	-		DZA65_RS14090	0.60	-3.0
3,023,031	-		DZA65_RS14090	0.60	-1.4
3,023,049	+		DZA65_RS14090	0.64	-4.1
3,023,049	+		DZA65_RS14090	0.64	-1.5
3,023,068	-		DZA65_RS14090	0.67	-0.9
3,023,080	-		DZA65_RS14090	0.69	-3.4
3,023,119	+		DZA65_RS14090	0.76	-0.6
3,023,120	-		DZA65_RS14090	0.76	-2.5
3,023,120	-		DZA65_RS14090	0.76	-2.8
3,023,128	-		DZA65_RS14090	0.77	-2.5
3,023,128	-		DZA65_RS14090	0.77	-2.4
3,023,128	-		DZA65_RS14090	0.77	-2.1
3,023,129	+		DZA65_RS14090	0.77	+0.4
3,023,129	+		DZA65_RS14090	0.77	-2.3
3,023,129	+		DZA65_RS14090	0.77	-3.9
3,023,129	+		DZA65_RS14090	0.77	-2.4
3,023,129	+		DZA65_RS14090	0.77	-2.3
3,023,140	+		DZA65_RS14090	0.79	-1.2
3,023,141	-		DZA65_RS14090	0.79	-3.9
3,023,155	+		DZA65_RS14090	0.82	-1.5
3,023,229	+				-2.5
3,023,229	+				-1.4
3,023,229	+				-1.4
3,023,229	+				-1.2
3,023,229	+				-0.6
3,023,230	-				-3.7
3,023,245	-				-1.6
3,023,245	-				-2.7
3,023,245	-				-2.3
3,023,263	+				-1.9
3,023,263	+				-2.1
3,023,277	-				-1.2
3,023,310	+		DZA65_RS14095	0.14	-2.1
3,023,311	-		DZA65_RS14095	0.14	-2.2
3,023,311	-		DZA65_RS14095	0.14	-1.4
3,023,313	+		DZA65_RS14095	0.15	-1.6
3,023,313	+		DZA65_RS14095	0.15	-2.2
3,023,313	+		DZA65_RS14095	0.15	-0.9
3,023,379	+		DZA65_RS14095	0.33	-2.1
3,023,382	+		DZA65_RS14095	0.34	-2.3
3,023,382	+		DZA65_RS14095	0.34	-1.1
3,023,382	+		DZA65_RS14095	0.34	-0.2
3,023,382	+		DZA65_RS14095	0.34	+0.4
3,023,382	+		DZA65_RS14095	0.34	-1.5
3,023,383	-		DZA65_RS14095	0.34	-0.7
3,023,383	-		DZA65_RS14095	0.34	-2.4
3,023,383	-		DZA65_RS14095	0.34	-2.3
3,023,383	-		DZA65_RS14095	0.34	-1.8
3,023,383	-		DZA65_RS14095	0.34	-3.2
3,023,388	-		DZA65_RS14095	0.36	+0.4
3,023,388	-		DZA65_RS14095	0.36	-1.0
3,023,393	+		DZA65_RS14095	0.37	-0.2
3,023,393	+		DZA65_RS14095	0.37	-0.8
3,023,393	+		DZA65_RS14095	0.37	-0.9
3,023,394	-		DZA65_RS14095	0.38	-2.4
3,023,421	+		DZA65_RS14095	0.45	-1.1
3,023,421	+		DZA65_RS14095	0.45	-4.3
3,023,421	+		DZA65_RS14095	0.45	-2.9
3,023,422	-		DZA65_RS14095	0.46	-1.4
3,023,425	-		DZA65_RS14095	0.46	-3.5
3,023,425	-		DZA65_RS14095	0.46	-1.2
3,023,425	-		DZA65_RS14095	0.46	-1.4
3,023,425	-		DZA65_RS14095	0.46	-1.1
3,023,425	-		DZA65_RS14095	0.46	-0.6
3,023,448	+		DZA65_RS14095	0.53	+1.4
3,023,538	+		DZA65_RS14095	0.79	-2.9
3,023,539	-		DZA65_RS14095	0.79	-1.8
3,023,539	-		DZA65_RS14095	0.79	-3.9
3,023,539	-		DZA65_RS14095	0.79	-0.6
3,023,541	+		DZA65_RS14095	0.79	-2.8
3,023,557	-		DZA65_RS14095	0.84	-1.9
3,023,564	-		DZA65_RS14095	0.86	-1.6
3,023,564	-		DZA65_RS14095	0.86	-0.6
3,023,564	-		DZA65_RS14095	0.86	-2.3
3,023,581	+				-0.9
3,023,581	+				-3.2
3,023,581	+				-3.0
3,023,582	-				-1.9
3,023,582	-				-3.2
3,023,606	+				-3.8
3,023,607	-				-2.4
3,023,607	-				-1.8
3,023,607	-				-1.9
3,023,612	+				-1.8
3,023,612	+				-0.7
3,023,613	-				-1.4
3,023,631	+				-1.1
3,023,631	+				-1.2
3,023,631	+				-2.2
3,023,631	+				-1.9
3,023,632	-				-3.5
3,023,632	-				-3.6
3,023,632	-				-0.2
3,023,632	-				-2.9
3,023,632	-				-5.3
3,023,644	+				-3.3
3,023,644	+				+1.4
3,023,644	+				-2.4
3,023,644	+				-2.3
3,023,644	+				-2.9
3,023,644	+				-3.1
3,023,644	+				-2.6
3,023,644	+				-0.9
3,023,644	+				-1.2
3,023,644	+				-1.2
3,023,645	-				-1.8
3,023,645	-				-2.1
3,023,645	-				-3.1
3,023,645	-				+1.4
3,023,645	-				-1.5
3,023,645	-				-0.9
3,023,649	+				-2.3
3,023,649	+				-5.0
3,023,649	+				-2.6
3,023,649	+				-3.1
3,023,650	-				-1.2
3,023,656	+				-2.9
3,023,656	+				-1.3
3,023,656	+				-1.4
3,023,656	+				-1.2
3,023,657	-				-2.4
3,023,689	+				-0.3
3,023,689	+				-4.7
3,023,689	+				-3.2
3,023,689	+				-3.2
3,023,690	-				+0.4
3,023,690	-				-0.8
3,023,690	-				-0.6
3,023,706	-				-2.3
3,023,706	-				-0.9
3,023,706	-				-1.2
3,023,718	+				-0.7
3,023,719	-				-0.6
3,023,724	+				-0.5
3,023,727	+				-0.6
3,023,728	-				-0.6
3,023,728	-				-1.2
3,023,732	+				-4.3
3,023,732	+				-1.5
3,023,732	+				-1.6
3,023,732	+				-0.6
3,023,733	-				-1.9
3,023,734	+				-2.7
3,023,735	-				-3.5
3,023,735	-				+0.4
3,023,742	+				-3.5
3,023,742	+				-3.0
3,023,743	-				+0.8
3,023,743	-				-2.6
3,023,745	+				-1.9
3,023,746	-				-2.5
3,023,758	-				-0.4
3,023,798	+				-0.4
3,023,798	+				-1.6
3,023,799	-				-2.1
3,023,799	-				-1.6
3,023,799	-				+1.4
3,023,799	-				-1.2
3,023,799	-				+0.4
3,023,824	-				-1.4
3,023,837	+				-2.7
3,023,837	+				-0.9
3,023,837	+				-4.2
3,023,837	+				-2.3
3,023,838	-				-1.9
3,023,838	-				-0.6
3,023,838	-				-2.2
3,023,838	-				+1.1
3,023,844	+				-2.3
3,023,851	-				-1.6
3,023,851	-				-3.0
3,023,872	+				-4.1
3,023,873	-				-3.9
3,023,873	-				-1.5
3,023,886	+				-3.0
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