Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13815

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,965,097	-		DZA65_RS13810	0.45	-0.9
2,965,097	-		DZA65_RS13810	0.45	-0.2
2,965,159	+		DZA65_RS13810	0.49	+0.2
2,965,159	+		DZA65_RS13810	0.49	+0.5
2,965,159	+		DZA65_RS13810	0.49	-0.9
2,965,159	+		DZA65_RS13810	0.49	-0.2
2,965,159	+		DZA65_RS13810	0.49	-0.2
2,965,159	+		DZA65_RS13810	0.49	+0.4
2,965,159	+		DZA65_RS13810	0.49	-2.2
2,965,160	-		DZA65_RS13810	0.49	+0.7
2,965,160	-		DZA65_RS13810	0.49	+0.8
2,965,160	-		DZA65_RS13810	0.49	-2.4
2,965,160	-		DZA65_RS13810	0.49	-1.1
2,965,160	-		DZA65_RS13810	0.49	+1.4
2,965,160	-		DZA65_RS13810	0.49	+0.7
2,965,160	-		DZA65_RS13810	0.49	-0.2
2,965,160	-		DZA65_RS13810	0.49	+0.2
2,965,411	+		DZA65_RS13810	0.65	+0.4
2,965,412	-		DZA65_RS13810	0.65	-0.9
2,965,445	+		DZA65_RS13810	0.67	-0.1
2,965,446	-		DZA65_RS13810	0.67	+0.1
2,965,479	-		DZA65_RS13810	0.69	-0.4
2,965,501	+		DZA65_RS13810	0.71	+0.1
2,965,502	-		DZA65_RS13810	0.71	+1.4
2,965,770	-		DZA65_RS13810	0.87	+0.1
2,965,799	+		DZA65_RS13810	0.89	+0.4
2,965,868	+				-1.9
2,965,868	+				+0.7
2,965,868	+				-0.1
2,965,869	-				+0.4
2,965,919	+				+0.0
2,965,926	-				-0.2
2,965,931	+				+0.9
2,965,931	+				+0.7
2,965,932	-				-0.5
2,965,932	-				-0.8
2,965,932	-				-1.6
2,965,932	-				+0.9
2,965,932	-				-0.9
2,965,945	+				+0.4
2,965,945	+				+1.1
2,965,945	+				+1.9
2,965,945	+				+0.1
2,965,945	+				+0.2
2,965,945	+				-0.9
2,965,945	+				-0.0
2,965,946	-				+0.2
2,965,946	-				-1.1
2,965,986	+				-0.2
2,965,986	+				-2.4
2,965,991	+				+2.0
2,966,014	+				-0.3
2,966,014	+				+0.1
2,966,015	-				+0.2
2,966,015	-				+0.8
2,966,028	+				+0.7
2,966,028	+				-0.9
2,966,029	-				-0.9
2,966,029	-				+0.4
2,966,029	-				+2.3
2,966,059	+				-1.2
2,966,059	+				-0.9
2,966,059	+				-1.2
2,966,096	+				-1.2
2,966,143	+				+0.8
2,966,144	-				+0.1
2,966,147	+				-1.3
2,966,147	+				+0.2
2,966,148	-				+0.4
2,966,231	+		DZA65_RS13815	0.12	-0.1
2,966,267	+		DZA65_RS13815	0.15	-0.9
2,966,268	-		DZA65_RS13815	0.15	+0.2
2,966,588	-		DZA65_RS13815	0.44	-0.3
2,966,664	+		DZA65_RS13815	0.50	-0.8
2,966,687	-		DZA65_RS13815	0.52	-2.7
2,966,733	+		DZA65_RS13815	0.56	-0.2
2,966,956	-		DZA65_RS13815	0.76	-0.4
2,966,956	-		DZA65_RS13815	0.76	-1.9
2,967,180	+				+0.1
2,967,180	+				+0.4
2,967,180	+				-2.5
2,967,181	-				-0.7
2,967,220	+				-0.3
2,967,220	+				-0.6
2,967,220	+				-0.2
2,967,220	+				+0.7
2,967,234	+				-0.2
2,967,234	+				-0.4
2,967,234	+				-0.9
2,967,235	-				-0.9
2,967,284	+				-0.2
2,967,284	+				-0.5
2,967,285	-				-1.0
2,967,285	-				-2.3
2,967,297	+				+0.4
2,967,297	+				+0.2
2,967,297	+				+0.1
2,967,297	+				-1.1
2,967,298	-				+1.1
2,967,298	-				-0.4
2,967,352	+				+0.4
2,967,353	-				-0.7
2,967,369	+		DZA65_RS13820	0.12	+0.1
2,967,429	+				-1.2
2,967,429	+		DZA65_RS13820	0.19	-0.6
2,967,430	-		DZA65_RS13820	0.19	-0.4
2,967,432	+		DZA65_RS13820	0.20	+1.5
2,967,558	+		DZA65_RS13820	0.36	+1.5
2,967,558	+		DZA65_RS13820	0.36	-1.1
2,967,558	+		DZA65_RS13820	0.36	+0.1
2,967,559	-		DZA65_RS13820	0.36	-0.2
2,967,559	-		DZA65_RS13820	0.36	-0.9
2,967,559	-		DZA65_RS13820	0.36	+0.8
2,967,560	+		DZA65_RS13820	0.36	+0.2
2,967,560	+		DZA65_RS13820	0.36	-0.6
2,967,560	+		DZA65_RS13820	0.36	+0.6
2,967,560	+		DZA65_RS13820	0.36	+1.4
2,967,561	-		DZA65_RS13820	0.36	-0.4
2,967,561	-		DZA65_RS13820	0.36	-0.2
2,967,561	-		DZA65_RS13820	0.36	+1.4
2,967,561	-		DZA65_RS13820	0.36	-1.6
2,967,561	-		DZA65_RS13820	0.36	+0.4
2,967,561	-		DZA65_RS13820	0.36	+0.9
2,967,561	-		DZA65_RS13820	0.36	+0.1
2,967,650	+		DZA65_RS13820	0.47	+0.2
2,967,650	+		DZA65_RS13820	0.47	+1.1
2,967,650	+				-0.9
2,967,650	+				-0.2
2,967,650	+		DZA65_RS13820	0.47	+0.7
2,967,651	-		DZA65_RS13820	0.47	+0.1
2,967,651	-		DZA65_RS13820	0.47	-0.6
2,967,651	-		DZA65_RS13820	0.47	-0.9
2,967,651	-		DZA65_RS13820	0.47	+1.1
2,967,651	-		DZA65_RS13820	0.47	+0.1
2,967,651	-		DZA65_RS13820	0.47	+0.4
2,967,744	+		DZA65_RS13820	0.59	-1.2
2,967,744	+		DZA65_RS13820	0.59	-2.6
2,967,744	+		DZA65_RS13820	0.59	+2.4
2,967,744	+		DZA65_RS13820	0.59	-0.2
2,967,744	+		DZA65_RS13820	0.59	-0.4
2,967,744	+		DZA65_RS13820	0.59	+0.1
2,967,745	-		DZA65_RS13820	0.59	+2.0
2,967,745	-		DZA65_RS13820	0.59	+1.4
2,967,747	+		DZA65_RS13820	0.60	-0.6
2,967,747	+		DZA65_RS13820	0.60	-2.9
2,967,747	+		DZA65_RS13820	0.60	+2.1
2,967,747	+		DZA65_RS13820	0.60	-0.6
2,967,747	+		DZA65_RS13820	0.60	+1.1
2,967,748	-		DZA65_RS13820	0.60	-0.1
2,967,763	-		DZA65_RS13820	0.62	-0.6
2,967,846	+		DZA65_RS13820	0.72	-0.8
2,967,853	+		DZA65_RS13820	0.73	+1.0
2,967,853	+		DZA65_RS13820	0.73	-0.3
2,967,866	+		DZA65_RS13820	0.75	+0.2
2,967,866	+		DZA65_RS13820	0.75	-0.9
2,967,866	+		DZA65_RS13820	0.75	+1.4
2,967,866	+		DZA65_RS13820	0.75	+0.1
2,967,866	+		DZA65_RS13820	0.75	+0.7
2,967,866	+		DZA65_RS13820	0.75	+1.1
2,967,866	+		DZA65_RS13820	0.75	-0.8
2,967,866	+		DZA65_RS13820	0.75	-0.6
2,967,866	+		DZA65_RS13820	0.75	+1.7
2,967,866	+		DZA65_RS13820	0.75	-0.5
2,967,867	-		DZA65_RS13820	0.75	-2.4
2,967,867	-		DZA65_RS13820	0.75	-0.8
2,967,867	-		DZA65_RS13820	0.75	+1.2
2,967,867	-		DZA65_RS13820	0.75	+0.8
2,967,867	-		DZA65_RS13820	0.75	-0.0
2,967,867	-		DZA65_RS13820	0.75	-1.5
2,967,928	-		DZA65_RS13820	0.83	-0.2
2,967,933	+		DZA65_RS13820	0.83	+2.0
2,967,933	+		DZA65_RS13820	0.83	+1.4
2,968,066	-				+1.1
2,968,066	-				-0.5
2,968,076	+				-1.0
2,968,076	+				+1.7
2,968,076	+				-0.6
2,968,077	-				-0.8
2,968,097	+				-0.1
2,968,098	-				-1.2
2,968,098	-				-0.8
2,968,147	+				-0.2
2,968,148	-				+0.8
2,968,148	-				+0.7
2,968,150	+				-0.9
2,968,150	+				-0.2
2,968,150	+				+1.7
2,968,150	+				-1.4
2,968,151	-				+0.9
2,968,151	-				+0.7
2,968,151	-				-1.8
2,968,207	+				+0.7