Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13175

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,823,227	+		DZA65_RS13170	0.30	-0.0
2,823,227	+		DZA65_RS13170	0.30	-0.3
2,823,227	+		DZA65_RS13170	0.30	-1.4
2,823,227	+		DZA65_RS13170	0.30	-0.3
2,823,228	-		DZA65_RS13170	0.30	-0.2
2,823,264	-		DZA65_RS13170	0.34	+0.7
2,823,285	+		DZA65_RS13170	0.36	-1.2
2,823,286	-		DZA65_RS13170	0.36	-0.9
2,823,286	-		DZA65_RS13170	0.36	+0.1
2,823,286	-		DZA65_RS13170	0.36	+0.4
2,823,286	-		DZA65_RS13170	0.36	+0.3
2,823,286	-		DZA65_RS13170	0.36	+0.2
2,823,286	-		DZA65_RS13170	0.36	-2.3
2,823,286	-		DZA65_RS13170	0.36	-0.2
2,823,286	-		DZA65_RS13170	0.36	-0.4
2,823,286	-				+0.1
2,823,286	-		DZA65_RS13170	0.36	-0.2
2,823,286	-		DZA65_RS13170	0.36	-0.6
2,823,373	-		DZA65_RS13170	0.45	+0.2
2,823,419	+		DZA65_RS13170	0.49	+0.6
2,823,420	-		DZA65_RS13170	0.49	-0.8
2,823,420	-		DZA65_RS13170	0.49	-0.4
2,823,446	-		DZA65_RS13170	0.52	+1.4
2,823,446	-		DZA65_RS13170	0.52	+0.4
2,823,449	+		DZA65_RS13170	0.52	-1.7
2,823,449	+		DZA65_RS13170	0.52	-0.3
2,823,450	-		DZA65_RS13170	0.52	-0.7
2,823,948	+				-0.2
2,823,948	+				+0.0
2,823,948	+				-1.2
2,823,948	+				-1.6
2,823,948	+				+0.8
2,823,948	+				-2.6
2,823,948	+				-0.6
2,823,949	-				-2.2
2,823,949	-				-1.6
2,823,949	-				+1.0
2,823,949	-				+0.4
2,823,949	-				+1.6
2,823,949	-				-0.4
2,823,949	-				+0.4
2,823,970	+				+0.0
2,823,970	+				+0.1
2,823,970	+				-0.5
2,824,043	+				+0.7
2,824,043	+				+0.4
2,824,043	+				-0.1
2,824,043	+				+1.4
2,824,044	-				-0.7
2,824,044	-				+2.4
2,824,044	-				-0.2
2,824,044	-				-0.3
2,824,044	-				-0.0
2,824,061	+				+1.4
2,824,134	-				+0.8
2,824,166	+				-2.4
2,824,166	+				-0.2
2,824,167	-				+1.8
2,824,167	-				-0.6
2,824,167	-				-0.6
2,824,167	-				-1.4
2,824,167	-				+1.4
2,824,170	+				-0.9
2,824,170	+				-0.6
2,824,171	-				+0.4
2,824,171	-				+0.7
2,824,171	-				-0.6
2,824,197	+				-0.6
2,824,197	+				+1.0
2,824,197	+				-0.2
2,824,197	+				-2.3
2,824,197	+				-0.9
2,824,197	+				+0.4
2,824,197	+				-0.9
2,824,198	-				+0.1
2,824,198	-				+1.4
2,824,198	-				+2.0
2,824,198	-				+1.1
2,824,198	-				-0.6
2,824,198	-				+1.1
2,824,201	+				-1.4
2,824,201	+				+0.2
2,824,201	+				+3.0
2,824,202	-				-0.9
2,824,212	-		DZA65_RS13175	0.10	-1.2
2,824,297	+		DZA65_RS13175	0.41	-0.2
2,824,297	+		DZA65_RS13175	0.41	-0.2
2,824,297	+		DZA65_RS13175	0.41	+0.4
2,824,297	+		DZA65_RS13175	0.41	-1.7
2,824,297	+		DZA65_RS13175	0.41	-1.6
2,824,298	-		DZA65_RS13175	0.42	-1.2
2,824,298	-		DZA65_RS13175	0.42	-0.4
2,824,312	-		DZA65_RS13175	0.47	-1.7
2,824,314	+		DZA65_RS13175	0.48	-0.1
2,824,314	+		DZA65_RS13175	0.48	-0.2
2,824,314	+		DZA65_RS13175	0.48	-0.6
2,824,314	+		DZA65_RS13175	0.48	-0.4
2,824,314	+		DZA65_RS13175	0.48	-0.9
2,824,314	+		DZA65_RS13175	0.48	-0.3
2,824,315	-		DZA65_RS13175	0.48	+0.8
2,824,315	-		DZA65_RS13175	0.48	-0.6
2,824,381	+		DZA65_RS13175	0.72	-0.2
2,824,460	-				-1.4
2,824,460	-				+1.4
2,824,475	+				-0.6
2,824,475	+				+0.7
2,824,475	+				-1.4
2,824,477	+				-0.9
2,824,477	+				-1.9
2,824,478	-				+0.4
2,824,509	+				-0.9
2,824,510	-				-1.7
2,824,563	+		DZA65_RS13180	0.13	-0.2
2,824,565	+		DZA65_RS13180	0.15	-1.4
2,824,566	-		DZA65_RS13180	0.16	-0.7
2,824,626	+		DZA65_RS13180	0.73	+0.5
2,824,626	+		DZA65_RS13180	0.73	-0.0
2,824,626	+		DZA65_RS13180	0.73	-1.2
2,824,659	+				+0.8
2,824,660	-				-1.1
2,824,660	-				+2.6
2,824,660	-				-1.9
2,824,660	-				-0.9
2,824,660	-				+0.4
2,824,660	-				-0.9
2,824,660	-				-2.0
2,824,663	+				+1.4
2,824,663	+				-2.0
2,824,701	-				-0.2
2,824,728	+				-2.5
2,824,740	+				-1.3
2,824,740	+				-0.2
2,824,740	+				+0.8
2,824,769	-				+1.4
2,824,796	+				-1.2
2,824,796	+				-0.6
2,824,796	+				-1.6
2,824,797	-				-0.4
2,824,797	-				+1.2
2,824,797	-				-1.5
2,824,797	-				-0.5
2,824,832	-				+0.8
2,824,851	+				+0.4
2,824,851	+				-0.6
2,824,871	+				+1.0
2,824,884	+				-0.3
2,824,884	+				-1.7
2,824,894	+				-0.2
2,824,895	-				+1.8
2,824,895	-				+1.4
2,824,895	-				-0.9
2,824,900	-				-0.6
2,824,910	+				-0.2
2,824,911	-				+0.4
2,824,914	+				+0.9
2,824,914	+				-0.6
2,824,914	+				+1.4
2,824,983	+				-2.0
2,824,983	+				+2.6
2,824,983	+				-0.6
2,824,983	+				-0.0
2,824,983	+				-1.0
2,824,987	-				-2.0
2,824,996	+				-0.2
2,824,996	+				+0.4
2,824,999	+				-0.9
2,825,010	-				-1.4
2,825,013	-				-1.9
2,825,013	-				-0.2
2,825,013	-				-0.9
2,825,023	-				-0.6
2,825,026	-				+2.4
2,825,026	-				+0.9
2,825,026	-				-0.7
2,825,026	-				-2.1
2,825,026	-				-0.2
2,825,153	+				+0.7
2,825,153	+				-0.6
2,825,153	+				-0.2
2,825,153	+				-1.9
2,825,153	+				-0.0
2,825,153	+				-0.9
2,825,154	-				+0.4
2,825,154	-				+1.0
2,825,154	-				-1.4
2,825,161	+				-1.0
2,825,162	-				+1.1
2,825,168	+				-1.6
2,825,200	+				-2.0
2,825,200	+				-1.7
2,825,200	+				-1.0
2,825,203	-				+0.0
2,825,203	-				+0.8
2,825,217	+				+1.4
2,825,218	-				-1.7
2,825,222	-				+1.4
2,825,222	-				+1.4
2,825,253	-				-1.9
2,825,280	+		DZA65_RS13190	0.11	-0.2
2,825,280	+		DZA65_RS13190	0.11	+0.0
2,825,281	-		DZA65_RS13190	0.11	-2.6
2,825,287	-		DZA65_RS13190	0.11	-0.2
2,825,370	+		DZA65_RS13190	0.19	-1.6
2,825,371	-		DZA65_RS13190	0.19	-0.9
2,825,392	-		DZA65_RS13190	0.21	-0.7
2,825,405	+		DZA65_RS13190	0.22	-1.4
2,825,436	+		DZA65_RS13190	0.25	-1.2
2,825,449	-		DZA65_RS13190	0.26	+0.4