Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11745

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,505,435	+		DZA65_RS11740	0.22	-0.7
2,505,435	+		DZA65_RS11740	0.22	-1.7
2,505,435	+		DZA65_RS11740	0.22	-0.4
2,505,435	+		DZA65_RS11740	0.22	+0.3
2,505,435	+		DZA65_RS11740	0.22	-0.6
2,505,436	-		DZA65_RS11740	0.22	-0.3
2,505,436	-		DZA65_RS11740	0.22	-0.3
2,505,436	-		DZA65_RS11740	0.22	-1.0
2,505,444	+		DZA65_RS11740	0.23	-1.3
2,505,444	+		DZA65_RS11740	0.23	+1.0
2,505,444	+		DZA65_RS11740	0.23	-2.4
2,505,725	+		DZA65_RS11740	0.48	-0.3
2,505,726	-		DZA65_RS11740	0.48	-1.0
2,505,765	+		DZA65_RS11740	0.52	-0.4
2,505,766	-		DZA65_RS11740	0.52	+0.7
2,505,766	-		DZA65_RS11740	0.52	+1.3
2,505,766	-		DZA65_RS11740	0.52	-0.3
2,505,766	-		DZA65_RS11740	0.52	+0.2
2,505,809	+		DZA65_RS11740	0.55	-0.0
2,505,810	-		DZA65_RS11740	0.56	-0.5
2,505,810	-		DZA65_RS11740	0.56	-0.7
2,505,848	+		DZA65_RS11740	0.59	-0.7
2,505,978	+		DZA65_RS11740	0.70	+0.3
2,505,978	+		DZA65_RS11740	0.70	+1.0
2,505,978	+		DZA65_RS11740	0.70	-1.9
2,505,979	-		DZA65_RS11740	0.71	+0.7
2,505,979	-		DZA65_RS11740	0.71	-1.0
2,505,979	-		DZA65_RS11740	0.71	-1.5
2,505,992	+		DZA65_RS11740	0.72	-1.2
2,506,015	+		DZA65_RS11740	0.74	-0.6
2,506,016	-		DZA65_RS11740	0.74	-0.1
2,506,023	+		DZA65_RS11740	0.74	-0.1
2,506,023	+		DZA65_RS11740	0.74	-0.1
2,506,023	+		DZA65_RS11740	0.74	-1.9
2,506,023	+		DZA65_RS11740	0.74	-1.9
2,506,023	+		DZA65_RS11740	0.74	-0.7
2,506,024	-		DZA65_RS11740	0.75	+0.3
2,506,024	-		DZA65_RS11740	0.75	-1.0
2,506,024	-		DZA65_RS11740	0.75	-2.7
2,506,062	+		DZA65_RS11740	0.78	-1.5
2,506,062	+		DZA65_RS11740	0.78	-1.4
2,506,063	-		DZA65_RS11740	0.78	-1.0
2,506,063	-		DZA65_RS11740	0.78	-0.1
2,506,148	+		DZA65_RS11740	0.86	-1.0
2,506,148	+		DZA65_RS11740	0.86	-0.7
2,506,148	+		DZA65_RS11740	0.86	-1.0
2,506,152	+		DZA65_RS11740	0.86	+1.3
2,506,152	+		DZA65_RS11740	0.86	+1.3
2,506,152	+		DZA65_RS11740	0.86	-2.5
2,506,152	+		DZA65_RS11740	0.86	-0.7
2,506,153	-				-0.5
2,506,153	-		DZA65_RS11740	0.86	-0.1
2,506,153	-		DZA65_RS11740	0.86	-1.2
2,506,153	-		DZA65_RS11740	0.86	-1.4
2,506,153	-		DZA65_RS11740	0.86	-0.2
2,506,187	+		DZA65_RS11740	0.89	-0.3
2,506,188	-		DZA65_RS11740	0.89	-0.3
2,506,242	+				-1.1
2,506,242	+				-2.7
2,506,243	-				-0.6
2,506,243	-				-0.3
2,506,243	-				-0.6
2,506,243	-				-1.2
2,506,243	-				-0.3
2,506,262	+				+1.9
2,506,263	-				+0.6
2,506,298	+				-0.7
2,506,299	-				-1.4
2,506,299	-				-1.5
2,506,317	+				+0.3
2,506,317	+				-2.8
2,506,318	-				+0.1
2,506,318	-				-0.3
2,506,318	-				-1.0
2,506,318	-				+1.0
2,506,319	+				-1.4
2,506,320	-				+0.1
2,506,341	+				+1.9
2,506,341	+				+0.6
2,506,342	-				+0.1
2,506,342	-				-0.3
2,506,342	-				+0.4
2,506,342	-				+1.0
2,506,463	-		DZA65_RS11745	0.11	+0.5
2,506,463	-		DZA65_RS11745	0.11	-1.1
2,506,511	+		DZA65_RS11745	0.14	-2.9
2,506,512	-		DZA65_RS11745	0.14	-1.0
2,506,512	-		DZA65_RS11745	0.14	-0.7
2,506,512	-		DZA65_RS11745	0.14	-1.1
2,506,634	+		DZA65_RS11745	0.24	-0.6
2,506,635	-		DZA65_RS11745	0.24	+1.3
2,506,635	-		DZA65_RS11745	0.24	-0.3
2,506,708	-		DZA65_RS11745	0.30	-2.4
2,506,760	+		DZA65_RS11745	0.34	+1.9
2,506,760	+		DZA65_RS11745	0.34	-0.5
2,506,761	-		DZA65_RS11745	0.34	+1.3
2,506,761	-		DZA65_RS11745	0.34	-1.1
2,506,761	-		DZA65_RS11745	0.34	-1.6
2,506,761	-		DZA65_RS11745	0.34	-1.9
2,506,761	-		DZA65_RS11745	0.34	-1.0
2,506,761	-		DZA65_RS11745	0.34	-2.5
2,506,913	+		DZA65_RS11745	0.45	+0.7
2,506,913	+		DZA65_RS11745	0.45	-1.3
2,506,913	+		DZA65_RS11745	0.45	+0.9
2,506,913	+		DZA65_RS11745	0.45	+0.6
2,506,913	+		DZA65_RS11745	0.45	-1.3
2,506,914	-		DZA65_RS11745	0.46	-0.3
2,506,914	-		DZA65_RS11745	0.46	-2.1
2,506,914	-		DZA65_RS11745	0.46	-0.9
2,506,914	-		DZA65_RS11745	0.46	-1.5
2,506,914	-		DZA65_RS11745	0.46	-1.3
2,506,914	-		DZA65_RS11745	0.46	-1.0
2,506,914	-		DZA65_RS11745	0.46	-0.3
2,506,914	-		DZA65_RS11745	0.46	+0.3
2,506,928	+		DZA65_RS11745	0.47	-0.4
2,506,928	+		DZA65_RS11745	0.47	-1.9
2,506,928	+		DZA65_RS11745	0.47	+0.7
2,506,928	+		DZA65_RS11745	0.47	-0.0
2,506,928	+		DZA65_RS11745	0.47	-0.7
2,506,928	+		DZA65_RS11745	0.47	-1.0
2,506,928	+		DZA65_RS11745	0.47	+1.0
2,506,928	+		DZA65_RS11745	0.47	-0.9
2,506,929	-		DZA65_RS11745	0.47	+0.6
2,506,970	+		DZA65_RS11745	0.50	-1.6
2,506,971	-		DZA65_RS11745	0.50	-1.5
2,507,006	+		DZA65_RS11745	0.53	-1.0
2,507,006	+		DZA65_RS11745	0.53	-2.0
2,507,007	-		DZA65_RS11745	0.53	-0.3
2,507,048	+		DZA65_RS11745	0.56	+1.3
2,507,049	-		DZA65_RS11745	0.56	-1.3
2,507,051	+		DZA65_RS11745	0.56	+0.3
2,507,052	-		DZA65_RS11745	0.56	-1.3
2,507,078	+		DZA65_RS11745	0.58	-0.3
2,507,078	+		DZA65_RS11745	0.58	+1.7
2,507,078	+		DZA65_RS11745	0.58	-1.6
2,507,078	+		DZA65_RS11745	0.58	+1.1
2,507,078	+		DZA65_RS11745	0.58	-2.0
2,507,078	+		DZA65_RS11745	0.58	-1.3
2,507,079	-		DZA65_RS11745	0.58	-2.7
2,507,079	-		DZA65_RS11745	0.58	-0.5
2,507,079	-		DZA65_RS11745	0.58	+0.3
2,507,079	-		DZA65_RS11745	0.58	+1.3
2,507,120	+		DZA65_RS11745	0.61	-1.3
2,507,120	+		DZA65_RS11745	0.61	-1.2
2,507,120	+		DZA65_RS11745	0.61	-1.3
2,507,120	+		DZA65_RS11745	0.61	-0.5
2,507,120	+		DZA65_RS11745	0.61	-0.0
2,507,120	+		DZA65_RS11745	0.61	+1.3
2,507,120	+		DZA65_RS11745	0.61	-0.3
2,507,120	+		DZA65_RS11745	0.61	+2.3
2,507,121	-		DZA65_RS11745	0.62	+0.3
2,507,121	-		DZA65_RS11745	0.62	-3.1
2,507,121	-		DZA65_RS11745	0.62	-0.7
2,507,121	-		DZA65_RS11745	0.62	-1.5
2,507,121	-		DZA65_RS11745	0.62	+0.7
2,507,121	-		DZA65_RS11745	0.62	-1.1
2,507,121	-		DZA65_RS11745	0.62	-2.1
2,507,121	-		DZA65_RS11745	0.62	-0.7
2,507,147	+		DZA65_RS11745	0.64	-0.3
2,507,147	+		DZA65_RS11745	0.64	-1.2
2,507,148	-		DZA65_RS11745	0.64	-0.0
2,507,299	+				-0.5
2,507,299	+		DZA65_RS11745	0.75	-1.0
2,507,299	+		DZA65_RS11745	0.75	-0.3
2,507,299	+		DZA65_RS11745	0.75	+0.3
2,507,299	+		DZA65_RS11745	0.75	+0.6
2,507,299	+		DZA65_RS11745	0.75	-0.0
2,507,300	-		DZA65_RS11745	0.75	+0.0
2,507,300	-		DZA65_RS11745	0.75	-0.9
2,507,303	+		DZA65_RS11745	0.76	-0.6
2,507,303	+		DZA65_RS11745	0.76	-1.3
2,507,303	+		DZA65_RS11745	0.76	-1.6
2,507,303	+		DZA65_RS11745	0.76	-0.3
2,507,303	+		DZA65_RS11745	0.76	+0.9
2,507,303	+		DZA65_RS11745	0.76	-1.0
2,507,304	-		DZA65_RS11745	0.76	-0.5
2,507,304	-		DZA65_RS11745	0.76	-1.0
2,507,304	-		DZA65_RS11745	0.76	-0.7
2,507,304	-		DZA65_RS11745	0.76	-0.7
2,507,304	-		DZA65_RS11745	0.76	-2.3
2,507,525	+				-1.0
2,507,526	-				-1.5
2,507,528	-				-1.0
2,507,591	-				+0.9
2,507,635	-				+0.6
2,507,639	+				+0.1
2,507,790	+				+0.2
2,507,847	-				-0.7
2,507,848	+				-0.3
2,507,928	+				+1.3
2,507,966	-		DZA65_RS11750	0.14	-0.9
2,508,128	+		DZA65_RS11750	0.36	+1.5
2,508,128	+		DZA65_RS11750	0.36	-1.1
2,508,128	+		DZA65_RS11750	0.36	-2.0
2,508,198	-		DZA65_RS11750	0.46	-0.6
2,508,207	-		DZA65_RS11750	0.47	-2.0
2,508,258	-		DZA65_RS11750	0.55	+0.7
2,508,267	-		DZA65_RS11750	0.56	+0.7
2,508,267	-				-0.3
2,508,353	-		DZA65_RS11750	0.68	-1.2
2,508,437	-		DZA65_RS11750	0.79	-0.0
2,508,437	-		DZA65_RS11750	0.79	+0.3
2,508,440	+		DZA65_RS11750	0.80	+1.1
2,508,471	-				+0.3