Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11290

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,399,599	+		DZA65_RS11285	0.44	+0.3
2,399,599	+		DZA65_RS11285	0.44	-2.5
2,399,599	+		DZA65_RS11285	0.44	-0.3
2,399,599	+		DZA65_RS11285	0.44	-0.7
2,399,599	+		DZA65_RS11285	0.44	-1.7
2,399,600	-		DZA65_RS11285	0.45	+0.9
2,399,600	-		DZA65_RS11285	0.45	-1.5
2,399,600	-		DZA65_RS11285	0.45	+1.1
2,399,600	-		DZA65_RS11285	0.45	-3.6
2,399,620	+		DZA65_RS11285	0.46	+1.3
2,399,620	+		DZA65_RS11285	0.46	-3.5
2,399,620	+		DZA65_RS11285	0.46	-1.1
2,399,621	-		DZA65_RS11285	0.46	-1.0
2,399,621	-				-0.0
2,399,621	-		DZA65_RS11285	0.46	+0.3
2,399,621	-		DZA65_RS11285	0.46	-1.3
2,399,621	-		DZA65_RS11285	0.46	+0.3
2,399,621	-		DZA65_RS11285	0.46	+0.9
2,399,621	-		DZA65_RS11285	0.46	-0.7
2,399,633	+		DZA65_RS11285	0.47	-1.3
2,399,633	+		DZA65_RS11285	0.47	-3.1
2,399,637	-		DZA65_RS11285	0.47	-1.7
2,399,669	+				-0.7
2,399,669	+		DZA65_RS11285	0.49	-0.3
2,399,669	+		DZA65_RS11285	0.49	+1.0
2,399,669	+		DZA65_RS11285	0.49	-0.2
2,399,669	+		DZA65_RS11285	0.49	-0.5
2,399,669	+		DZA65_RS11285	0.49	-0.0
2,399,669	+		DZA65_RS11285	0.49	-3.0
2,399,669	+		DZA65_RS11285	0.49	-1.0
2,399,669	+				-0.8
2,399,669	+		DZA65_RS11285	0.49	-1.3
2,399,669	+		DZA65_RS11285	0.49	+1.3
2,399,669	+		DZA65_RS11285	0.49	-0.3
2,399,669	+		DZA65_RS11285	0.49	-1.6
2,399,669	+		DZA65_RS11285	0.49	-1.5
2,399,669	+		DZA65_RS11285	0.49	-0.7
2,399,669	+		DZA65_RS11285	0.49	-0.5
2,399,669	+		DZA65_RS11285	0.49	-0.4
2,399,670	-		DZA65_RS11285	0.49	-1.9
2,399,670	-		DZA65_RS11285	0.49	+0.7
2,399,670	-		DZA65_RS11285	0.49	-1.0
2,399,670	-		DZA65_RS11285	0.49	-1.4
2,399,670	-		DZA65_RS11285	0.49	-1.0
2,399,670	-		DZA65_RS11285	0.49	+0.7
2,399,670	-		DZA65_RS11285	0.49	+0.3
2,399,670	-		DZA65_RS11285	0.49	-1.1
2,399,670	-		DZA65_RS11285	0.49	-1.3
2,399,670	-		DZA65_RS11285	0.49	-0.7
2,399,670	-		DZA65_RS11285	0.49	+0.9
2,399,670	-		DZA65_RS11285	0.49	+1.3
2,399,670	-		DZA65_RS11285	0.49	-1.4
2,399,670	-		DZA65_RS11285	0.49	-1.3
2,399,981	+		DZA65_RS11285	0.69	-1.9
2,399,982	-		DZA65_RS11285	0.69	-0.4
2,399,982	-		DZA65_RS11285	0.69	+0.9
2,399,983	+		DZA65_RS11285	0.69	-0.7
2,399,983	+		DZA65_RS11285	0.69	+0.3
2,399,983	+		DZA65_RS11285	0.69	-0.3
2,399,983	+		DZA65_RS11285	0.69	-2.0
2,399,984	-		DZA65_RS11285	0.69	-0.3
2,400,050	-		DZA65_RS11285	0.73	+0.3
2,400,075	-		DZA65_RS11285	0.75	-0.1
2,400,075	-		DZA65_RS11285	0.75	-0.3
2,400,075	-		DZA65_RS11285	0.75	+1.1
2,400,159	-		DZA65_RS11285	0.80	+0.7
2,400,323	+				-0.9
2,400,323	+				-0.3
2,400,323	+				-2.7
2,400,324	-				-1.3
2,400,329	+				-1.9
2,400,329	+				-0.4
2,400,330	-				+0.5
2,400,330	-				-0.3
2,400,347	+				+0.9
2,400,389	+				-0.7
2,400,389	+				-1.0
2,400,390	-				-0.3
2,400,406	+				-1.0
2,400,406	+				-1.7
2,400,461	+				+0.8
2,400,461	+				+0.1
2,400,462	-				-1.9
2,400,480	+				+0.1
2,400,480	+				-2.1
2,400,480	+				-1.0
2,400,480	+				+0.7
2,400,480	+				+1.0
2,400,481	-				-1.7
2,400,481	-				-0.0
2,400,494	+				+0.1
2,400,494	+				-0.6
2,400,565	-				-1.0
2,400,609	+				+0.7
2,400,616	+				-2.2
2,400,616	+				-1.3
2,400,616	+				+3.2
2,400,616	+				-1.4
2,400,617	-		DZA65_RS11290	0.10	-1.9
2,400,617	-		DZA65_RS11290	0.10	+2.7
2,400,617	-		DZA65_RS11290	0.10	-0.3
2,400,617	-		DZA65_RS11290	0.10	-0.1
2,400,617	-		DZA65_RS11290	0.10	-1.0
2,400,617	-		DZA65_RS11290	0.10	+0.2
2,400,617	-		DZA65_RS11290	0.10	+0.7
2,400,617	-		DZA65_RS11290	0.10	-0.1
2,400,617	-		DZA65_RS11290	0.10	-0.1
2,400,621	-		DZA65_RS11290	0.11	-1.3
2,400,628	+		DZA65_RS11290	0.12	+0.0
2,400,629	-		DZA65_RS11290	0.12	-0.7
2,400,629	-		DZA65_RS11290	0.12	+1.3
2,400,660	-		DZA65_RS11290	0.16	+1.1
2,400,706	+		DZA65_RS11290	0.22	-0.7
2,400,706	+		DZA65_RS11290	0.22	+0.1
2,400,707	-		DZA65_RS11290	0.22	+1.3
2,400,707	-		DZA65_RS11290	0.22	+2.0
2,400,707	-		DZA65_RS11290	0.22	+2.6
2,400,833	+		DZA65_RS11290	0.38	-0.9
2,400,833	+		DZA65_RS11290	0.38	-1.1
2,400,833	+		DZA65_RS11290	0.38	+0.0
2,400,833	+		DZA65_RS11290	0.38	-0.5
2,400,834	-		DZA65_RS11290	0.38	+0.0
2,400,834	-		DZA65_RS11290	0.38	-0.0
2,400,834	-		DZA65_RS11290	0.38	+0.3
2,400,834	-		DZA65_RS11290	0.38	-1.4
2,400,907	-		DZA65_RS11290	0.48	-2.1
2,401,071	-		DZA65_RS11290	0.69	+0.5
2,401,071	-		DZA65_RS11290	0.69	+1.7
2,401,106	+		DZA65_RS11290	0.74	-0.7
2,401,107	-		DZA65_RS11290	0.74	+0.3
2,401,230	+				+1.3
2,401,305	+				-1.0
2,401,305	+				-1.0
2,401,305	+				-0.1
2,401,305	+				-1.7
2,401,305	+				+0.1
2,401,306	-				+0.3
2,401,306	-				-0.7
2,401,306	-				-0.7
2,401,306	-				+0.2
2,401,306	-				-0.5
2,401,306	-				-0.7
2,401,306	-				+0.3
2,401,306	-				-0.8
2,401,306	-				+0.5
2,401,306	-				+0.7
2,401,306	-				-1.0
2,401,306	-				-1.3
2,401,306	-				+0.1
2,401,306	-				+1.3
2,401,306	-				-0.7
2,401,306	-				+0.5
2,401,306	-				-1.5
2,401,306	-				-2.1
2,401,358	-				-0.5
2,401,999	+		DZA65_RS11295	0.87	+1.1
2,402,000	-		DZA65_RS11295	0.87	-0.0
2,402,082	-				-0.3
2,402,095	+				-1.7
2,402,095	+				-1.9
2,402,096	-				-1.0
2,402,133	+				-2.5
2,402,141	+				+0.1
2,402,141	+				-0.3
2,402,141	+				+1.8
2,402,142	-				+1.3
2,402,142	-				-0.7
2,402,142	-				+0.5
2,402,142	-				-0.5
2,402,142	-				-1.7
2,402,142	-				+0.3
2,402,142	-				-3.5
2,402,222	+				-1.0
2,402,222	+				+0.9
2,402,222	+				-0.5
2,402,222	+				-0.9