Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10775

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,278,650	+		DZA65_RS10770	0.29	+0.7
2,278,650	+		DZA65_RS10770	0.29	+0.8
2,278,650	+		DZA65_RS10770	0.29	-0.7
2,278,650	+		DZA65_RS10770	0.29	-2.3
2,278,650	+		DZA65_RS10770	0.29	+0.9
2,278,650	+		DZA65_RS10770	0.29	+0.3
2,278,715	-		DZA65_RS10770	0.35	-0.5
2,278,734	-		DZA65_RS10770	0.37	-0.6
2,278,965	+		DZA65_RS10770	0.60	-0.7
2,279,130	+		DZA65_RS10770	0.76	+0.6
2,279,130	+		DZA65_RS10770	0.76	+1.2
2,279,139	+		DZA65_RS10770	0.77	-0.6
2,279,139	+		DZA65_RS10770	0.77	-0.7
2,279,140	-		DZA65_RS10770	0.77	-2.5
2,279,140	-		DZA65_RS10770	0.77	-0.5
2,279,210	+		DZA65_RS10770	0.84	+1.3
2,279,211	-		DZA65_RS10770	0.84	-3.5
2,279,211	-		DZA65_RS10770	0.84	-0.5
2,279,214	+		DZA65_RS10770	0.84	+2.1
2,279,214	+		DZA65_RS10770	0.84	+0.2
2,279,214	+		DZA65_RS10770	0.84	+0.3
2,279,214	+		DZA65_RS10770	0.84	-2.9
2,279,214	+		DZA65_RS10770	0.84	-0.1
2,279,214	+		DZA65_RS10770	0.84	+1.3
2,279,215	-		DZA65_RS10770	0.84	-0.6
2,279,215	-		DZA65_RS10770	0.84	+2.3
2,279,305	-				-2.0
2,279,346	+				+0.9
2,279,346	+				+0.6
2,279,347	-				-0.3
2,279,347	-				-0.0
2,279,355	+				+0.9
2,279,355	+				-0.7
2,279,355	+				+0.3
2,279,355	+				-0.3
2,279,356	-				-0.6
2,279,356	-				-0.3
2,279,379	-				-2.3
2,279,436	-				-1.0
2,279,436	-				+1.6
2,279,436	-				-0.5
2,279,436	-				-0.4
2,279,455	-				+0.3
2,279,455	-				-2.0
2,279,675	+				-0.5
2,279,717	-		DZA65_RS10775	0.12	-1.0
2,279,717	-		DZA65_RS10775	0.12	-1.9
2,279,717	-		DZA65_RS10775	0.12	-0.5
2,279,886	-		DZA65_RS10775	0.21	+0.7
2,279,996	+		DZA65_RS10775	0.27	+0.3
2,279,997	-		DZA65_RS10775	0.27	+1.3
2,280,001	-		DZA65_RS10775	0.27	+0.1
2,280,001	-		DZA65_RS10775	0.27	+2.3
2,280,001	-		DZA65_RS10775	0.27	-0.0
2,280,104	+		DZA65_RS10775	0.33	+0.7
2,280,115	+		DZA65_RS10775	0.34	-1.9
2,280,313	+		DZA65_RS10775	0.44	-0.7
2,280,313	+		DZA65_RS10775	0.44	-0.9
2,280,313	+		DZA65_RS10775	0.44	+0.7
2,280,313	+		DZA65_RS10775	0.44	+0.2
2,280,313	+		DZA65_RS10775	0.44	-0.7
2,280,313	+		DZA65_RS10775	0.44	+0.6
2,280,314	-		DZA65_RS10775	0.44	-0.7
2,280,314	-		DZA65_RS10775	0.44	-0.6
2,280,336	+		DZA65_RS10775	0.46	+0.3
2,280,336	+		DZA65_RS10775	0.46	+0.7
2,280,403	+		DZA65_RS10775	0.49	+1.3
2,280,409	+				-1.5
2,280,409	+		DZA65_RS10775	0.49	-0.1
2,280,409	+		DZA65_RS10775	0.49	+0.3
2,280,409	+		DZA65_RS10775	0.49	+1.3
2,280,409	+		DZA65_RS10775	0.49	-1.7
2,280,409	+		DZA65_RS10775	0.49	-1.3
2,280,410	-		DZA65_RS10775	0.50	+0.4
2,280,410	-		DZA65_RS10775	0.50	-1.3
2,280,410	-		DZA65_RS10775	0.50	+1.0
2,280,410	-		DZA65_RS10775	0.50	+0.7
2,280,410	-		DZA65_RS10775	0.50	-0.0
2,280,410	-		DZA65_RS10775	0.50	-1.0
2,280,410	-		DZA65_RS10775	0.50	+0.4
2,280,426	-		DZA65_RS10775	0.50	-0.7
2,280,604	-		DZA65_RS10775	0.60	-2.2
2,280,635	-		DZA65_RS10775	0.62	-0.7
2,280,665	+				+0.7
2,280,666	-		DZA65_RS10775	0.63	-2.4
2,280,727	+		DZA65_RS10775	0.67	-2.2
2,280,728	-		DZA65_RS10775	0.67	-1.5
2,280,728	-		DZA65_RS10775	0.67	-0.0
2,280,728	-		DZA65_RS10775	0.67	+0.7
2,280,784	+		DZA65_RS10775	0.70	-1.7
2,280,785	-		DZA65_RS10775	0.70	-1.7
2,280,785	-		DZA65_RS10775	0.70	-0.3
2,280,787	+		DZA65_RS10775	0.70	-0.3
2,280,787	+		DZA65_RS10775	0.70	+0.3
2,280,787	+		DZA65_RS10775	0.70	-0.2
2,280,788	-		DZA65_RS10775	0.70	-0.3
2,280,868	+		DZA65_RS10775	0.74	+2.3
2,280,868	+		DZA65_RS10775	0.74	-0.9
2,280,869	-		DZA65_RS10775	0.74	+0.3
2,280,869	-		DZA65_RS10775	0.74	+0.2
2,280,869	-		DZA65_RS10775	0.74	-0.3
2,280,872	-		DZA65_RS10775	0.75	-0.3
2,280,872	-		DZA65_RS10775	0.75	-1.0
2,280,872	-		DZA65_RS10775	0.75	+0.3
2,280,872	-		DZA65_RS10775	0.75	+0.6
2,280,872	-		DZA65_RS10775	0.75	+0.3
2,280,872	-		DZA65_RS10775	0.75	+1.3
2,280,952	+		DZA65_RS10775	0.79	-1.3
2,280,952	+		DZA65_RS10775	0.79	-0.7
2,280,952	+		DZA65_RS10775	0.79	+0.5
2,280,952	+		DZA65_RS10775	0.79	-0.7
2,280,953	-		DZA65_RS10775	0.79	+1.8
2,280,953	-		DZA65_RS10775	0.79	-0.4
2,280,953	-		DZA65_RS10775	0.79	+1.3
2,280,953	-		DZA65_RS10775	0.79	+0.9
2,280,953	-		DZA65_RS10775	0.79	+0.3
2,280,953	-		DZA65_RS10775	0.79	+1.3
2,280,953	-		DZA65_RS10775	0.79	-1.3
2,280,953	-		DZA65_RS10775	0.79	-0.7
2,281,053	-		DZA65_RS10775	0.84	-1.0
2,281,161	+				-0.5
2,281,173	+				+0.3
2,281,209	+				+1.3
2,281,209	+				-0.8
2,281,220	-				+1.0
2,281,220	-				-0.7
2,281,220	-				+0.4
2,281,220	-				+1.3
2,281,220	-				-1.3
2,281,220	-				-1.0
2,281,220	-				+1.7
2,281,269	-				-2.7
2,281,312	-				-0.1
2,281,372	+				+1.2
2,281,417	+				-1.0
2,281,476	-				+1.3
2,281,476	-				+0.3
2,281,486	+				-0.7
2,281,486	+				-0.4
2,281,486	+				-0.3
2,281,486	+				+0.3
2,281,490	+				-0.9
2,281,490	+				+0.3
2,281,491	-				-0.2
2,281,491	-				-1.3
2,281,491	-				-0.7
2,281,491	-				+0.7
2,281,539	+				-1.6
2,281,540	-				-0.7
2,281,548	+				-2.2
2,281,571	+				-0.5
2,281,571	+				+1.2
2,281,571	+				-0.4
2,281,572	-				-0.3
2,281,572	-				+1.2
2,281,629	+				-1.8
2,281,693	+		DZA65_RS10780	0.15	+0.1
2,281,909	+		DZA65_RS10780	0.54	-1.0
2,281,909	+		DZA65_RS10780	0.54	-0.7
2,281,910	-		DZA65_RS10780	0.54	-2.2
2,281,935	+		DZA65_RS10780	0.59	-2.3
2,281,996	+		DZA65_RS10780	0.70	+1.3
2,282,085	-		DZA65_RS10780	0.86	+0.6
2,282,085	-		DZA65_RS10780	0.86	-1.9
2,282,085	-		DZA65_RS10780	0.86	-1.0
2,282,134	+				-1.3
2,282,135	-				+0.4
2,282,153	+				-0.3
2,282,153	+				+1.7
2,282,153	+				-1.9
2,282,153	+				-1.2
2,282,154	-				+0.1
2,282,154	-				-1.7
2,282,154	-				-2.5
2,282,159	+				+0.1
2,282,159	+				+0.6
2,282,160	-				-0.3
2,282,221	+				+1.6