Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10590

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,245,433	+				+0.3
2,245,433	+				-0.3
2,245,537	+				-0.3
2,245,538	-				-2.3
2,245,605	-				-0.9
2,245,605	-				-2.0
2,245,654	+		DZA65_RS10585	0.17	+0.3
2,245,654	+		DZA65_RS10585	0.17	-2.0
2,245,736	-		DZA65_RS10585	0.30	-1.8
2,245,868	+		DZA65_RS10585	0.50	-2.7
2,245,869	-		DZA65_RS10585	0.50	-0.7
2,245,898	-		DZA65_RS10585	0.55	-0.5
2,245,898	-		DZA65_RS10585	0.55	-0.7
2,245,962	-		DZA65_RS10585	0.65	-1.5
2,246,049	+		DZA65_RS10585	0.79	-1.5
2,246,049	+		DZA65_RS10585	0.79	-1.3
2,246,049	+		DZA65_RS10585	0.79	+0.3
2,246,058	+		DZA65_RS10585	0.80	-0.7
2,246,058	+		DZA65_RS10585	0.80	-4.2
2,246,059	-		DZA65_RS10585	0.80	-0.3
2,246,059	-		DZA65_RS10585	0.80	-0.7
2,246,059	-		DZA65_RS10585	0.80	+0.3
2,246,134	-				-0.7
2,246,204	+				+4.6
2,246,205	-				-1.1
2,246,205	-				-0.3
2,246,243	+				-0.6
2,246,243	+				+0.3
2,246,244	-				+0.7
2,246,295	+				-1.3
2,246,295	+				+0.6
2,246,295	+				+2.0
2,246,296	-				-2.0
2,246,322	+				+1.3
2,246,322	+				+0.5
2,246,323	-				-0.3
2,246,323	-				-0.1
2,246,323	-				-0.0
2,246,326	-				-1.4
2,246,326	-				+0.6
2,246,326	-				+0.3
2,246,390	+				+1.3
2,246,390	+				-1.0
2,246,390	+				-0.8
2,246,390	+				-0.7
2,246,391	-				+0.1
2,246,391	-				-0.8
2,246,391	-				+2.3
2,246,391	-				+0.8
2,246,391	-				-1.3
2,246,391	-				+1.3
2,246,391	-				-1.5
2,246,532	+		DZA65_RS10590	0.12	+1.1
2,246,532	+		DZA65_RS10590	0.12	-1.9
2,246,535	-		DZA65_RS10590	0.12	-1.3
2,246,535	-		DZA65_RS10590	0.12	-0.5
2,246,535	-		DZA65_RS10590	0.12	-0.7
2,246,662	+		DZA65_RS10590	0.23	+1.1
2,246,662	+		DZA65_RS10590	0.23	+0.3
2,246,662	+		DZA65_RS10590	0.23	-0.6
2,246,662	+		DZA65_RS10590	0.23	-0.4
2,246,663	-		DZA65_RS10590	0.23	+0.3
2,246,663	-		DZA65_RS10590	0.23	+0.3
2,246,663	-		DZA65_RS10590	0.23	+0.1
2,246,663	-		DZA65_RS10590	0.23	+2.3
2,246,766	+		DZA65_RS10590	0.31	+0.5
2,246,766	+		DZA65_RS10590	0.31	-0.4
2,246,766	+		DZA65_RS10590	0.31	+0.6
2,246,767	-		DZA65_RS10590	0.32	-0.7
2,246,885	+		DZA65_RS10590	0.42	-1.0
2,247,117	+		DZA65_RS10590	0.61	-0.1
2,247,180	-		DZA65_RS10590	0.67	-0.1
2,247,306	+		DZA65_RS10590	0.77	-2.6
2,247,306	+		DZA65_RS10590	0.77	-0.3
2,247,307	-		DZA65_RS10590	0.77	-0.8
2,247,307	-		DZA65_RS10590	0.77	+0.3
2,247,341	+				+0.6
2,247,341	+		DZA65_RS10590	0.80	-1.3
2,247,341	+		DZA65_RS10590	0.80	-0.4
2,247,341	+		DZA65_RS10590	0.80	+2.1
2,247,342	-		DZA65_RS10590	0.80	-0.7
2,247,342	-		DZA65_RS10590	0.80	-0.0
2,247,342	-		DZA65_RS10590	0.80	+1.1
2,247,393	+		DZA65_RS10590	0.85	-0.7
2,247,393	+		DZA65_RS10590	0.85	-0.7
2,247,393	+		DZA65_RS10590	0.85	-0.4
2,247,393	+		DZA65_RS10590	0.85	+1.1
2,247,443	+		DZA65_RS10590	0.89	-1.3
2,247,528	+				-0.3
2,247,528	+				+0.3
2,247,529	-				-0.3
2,247,569	-				-0.1
2,247,569	-				-1.0
2,247,596	+				-0.4
2,247,597	-				-0.0
2,247,628	-				-1.0
2,247,628	-				+0.5
2,247,693	-				+1.0
2,247,788	-				-0.7
2,247,829	+				-0.3
2,247,829	+				-1.4
2,247,829	+				-2.9
2,247,935	+				+0.9
2,247,939	+				+1.7
2,247,939	+				-0.3
2,247,939	+				-1.0
2,247,939	+				-0.3
2,247,939	+				+0.3
2,247,940	-				-1.0
2,247,940	-				-0.3
2,247,940	-				-0.6
2,248,008	+				+2.1
2,248,056	+				+0.3
2,248,056	+				-1.3
2,248,056	+				-1.3
2,248,056	+				+2.1
2,248,057	-				+0.3
2,248,057	-				-1.9
2,248,057	-				-0.6
2,248,057	-				+0.6
2,248,093	+		DZA65_RS10595	0.11	-1.0
2,248,094	-		DZA65_RS10595	0.11	-1.1
2,248,094	-				-1.5
2,248,105	-		DZA65_RS10595	0.11	-0.3
2,248,120	-		DZA65_RS10595	0.12	+1.3
2,248,137	+		DZA65_RS10595	0.13	-2.7
2,248,160	+		DZA65_RS10595	0.14	+1.3
2,248,160	+		DZA65_RS10595	0.14	+0.3
2,248,160	+		DZA65_RS10595	0.14	-0.1
2,248,161	-		DZA65_RS10595	0.14	-0.1
2,248,161	-		DZA65_RS10595	0.14	-0.3
2,248,165	-		DZA65_RS10595	0.14	-1.3
2,248,165	-		DZA65_RS10595	0.14	-0.4
2,248,210	+		DZA65_RS10595	0.17	-0.7
2,248,211	-		DZA65_RS10595	0.17	+1.7
2,248,211	-		DZA65_RS10595	0.17	+1.3
2,248,211	-		DZA65_RS10595	0.17	-1.5
2,248,252	-		DZA65_RS10595	0.19	+1.7
2,248,329	+		DZA65_RS10595	0.22	-0.7
2,248,329	+		DZA65_RS10595	0.22	+1.2
2,248,329	+		DZA65_RS10595	0.22	+0.1
2,248,329	+		DZA65_RS10595	0.22	+0.7
2,248,329	+		DZA65_RS10595	0.22	-1.5
2,248,330	-		DZA65_RS10595	0.22	-1.6
2,248,330	-		DZA65_RS10595	0.22	-0.5
2,248,330	-		DZA65_RS10595	0.22	-0.0
2,248,330	-		DZA65_RS10595	0.22	+0.5
2,248,330	-		DZA65_RS10595	0.22	-0.5
2,248,330	-				-1.7
2,248,431	+		DZA65_RS10595	0.27	+0.7
2,248,432	-				-1.0
2,248,432	-		DZA65_RS10595	0.27	+0.9
2,248,432	-		DZA65_RS10595	0.27	-0.4
2,248,434	+		DZA65_RS10595	0.27	+0.1
2,248,434	+		DZA65_RS10595	0.27	-1.7
2,248,434	+				+2.1
2,248,434	+		DZA65_RS10595	0.27	-0.7
2,248,434	+		DZA65_RS10595	0.27	+0.5
2,248,434	+		DZA65_RS10595	0.27	-1.4
2,248,434	+		DZA65_RS10595	0.27	-1.9
2,248,434	+		DZA65_RS10595	0.27	-0.7
2,248,434	+				-1.5
2,248,434	+		DZA65_RS10595	0.27	+0.3
2,248,435	-		DZA65_RS10595	0.28	+0.3
2,248,435	-		DZA65_RS10595	0.28	-0.3
2,248,435	-		DZA65_RS10595	0.28	+1.4
2,248,435	-		DZA65_RS10595	0.28	-0.0
2,248,435	-		DZA65_RS10595	0.28	-0.0
2,248,435	-		DZA65_RS10595	0.28	-0.9
2,248,435	-		DZA65_RS10595	0.28	-3.4
2,248,468	-		DZA65_RS10595	0.29	-0.6
2,248,521	+		DZA65_RS10595	0.32	+1.3
2,248,521	+		DZA65_RS10595	0.32	-0.0
2,248,522	-		DZA65_RS10595	0.32	+0.4
2,248,522	-		DZA65_RS10595	0.32	+0.8
2,248,522	-		DZA65_RS10595	0.32	-0.1
2,248,545	+		DZA65_RS10595	0.33	+2.3
2,248,546	-		DZA65_RS10595	0.33	-0.0
2,248,546	-		DZA65_RS10595	0.33	-2.0
2,248,546	-		DZA65_RS10595	0.33	+0.6
2,248,546	-		DZA65_RS10595	0.33	+1.4
2,248,546	-		DZA65_RS10595	0.33	-0.4
2,248,546	-		DZA65_RS10595	0.33	+0.1
2,248,546	-		DZA65_RS10595	0.33	-0.2
2,248,550	+		DZA65_RS10595	0.33	+0.3
2,248,550	+		DZA65_RS10595	0.33	+0.3
2,248,550	+		DZA65_RS10595	0.33	-2.3
2,248,550	+		DZA65_RS10595	0.33	+0.7
2,248,550	+		DZA65_RS10595	0.33	+1.3
2,248,551	-		DZA65_RS10595	0.33	+1.3
2,248,551	-		DZA65_RS10595	0.33	+1.7
2,248,560	-		DZA65_RS10595	0.34	-1.5