Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10075

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,130,780	-				-0.5
2,131,030	+		DZA65_RS10070	0.32	+0.3
2,131,030	+		DZA65_RS10070	0.32	-2.0
2,131,030	+		DZA65_RS10070	0.32	+0.7
2,131,030	+		DZA65_RS10070	0.32	+0.1
2,131,031	-		DZA65_RS10070	0.32	-1.3
2,131,089	+		DZA65_RS10070	0.39	-0.3
2,131,089	+		DZA65_RS10070	0.39	-2.8
2,131,089	+		DZA65_RS10070	0.39	+1.3
2,131,089	+		DZA65_RS10070	0.39	+3.1
2,131,089	+		DZA65_RS10070	0.39	+1.7
2,131,089	+		DZA65_RS10070	0.39	+1.3
2,131,090	-		DZA65_RS10070	0.39	-2.1
2,131,090	-		DZA65_RS10070	0.39	-0.3
2,131,090	-		DZA65_RS10070	0.39	+1.3
2,131,090	-		DZA65_RS10070	0.39	-1.5
2,131,090	-		DZA65_RS10070	0.39	-0.3
2,131,090	-		DZA65_RS10070	0.39	+0.6
2,131,090	-		DZA65_RS10070	0.39	-0.6
2,131,093	+		DZA65_RS10070	0.39	+0.3
2,131,093	+		DZA65_RS10070	0.39	-0.3
2,131,093	+		DZA65_RS10070	0.39	+1.3
2,131,093	+		DZA65_RS10070	0.39	+0.6
2,131,093	+		DZA65_RS10070	0.39	+0.7
2,131,094	-		DZA65_RS10070	0.40	+1.6
2,131,115	-		DZA65_RS10070	0.42	-0.0
2,131,154	+		DZA65_RS10070	0.47	-1.1
2,131,233	+		DZA65_RS10070	0.56	-0.3
2,131,233	+		DZA65_RS10070	0.56	-0.3
2,131,234	-		DZA65_RS10070	0.57	-0.2
2,131,399	+		DZA65_RS10070	0.77	+0.3
2,131,399	+		DZA65_RS10070	0.77	+0.3
2,131,399	+		DZA65_RS10070	0.77	-0.9
2,131,399	+		DZA65_RS10070	0.77	+1.2
2,131,400	-		DZA65_RS10070	0.77	+0.1
2,131,400	-		DZA65_RS10070	0.77	+0.7
2,131,429	-		DZA65_RS10070	0.80	-0.5
2,131,555	+				-2.0
2,131,615	+				-1.7
2,131,615	+				-2.3
2,131,616	-				-1.5
2,131,616	-				-2.0
2,131,616	-				+1.0
2,131,616	-				+2.6
2,131,616	-				+1.3
2,131,795	+				+0.4
2,131,795	+				+0.9
2,131,796	-				-1.3
2,131,796	-				-2.3
2,131,801	-				-0.7
2,131,801	-				+0.3
2,132,142	+		DZA65_RS10075	0.20	+0.2
2,132,143	-		DZA65_RS10075	0.20	+0.3
2,132,143	-		DZA65_RS10075	0.20	-1.6
2,132,211	+		DZA65_RS10075	0.24	+0.3
2,132,211	+		DZA65_RS10075	0.24	-0.7
2,132,212	-		DZA65_RS10075	0.24	-0.7
2,132,331	+		DZA65_RS10075	0.30	-2.5
2,132,332	-		DZA65_RS10075	0.30	-0.7
2,132,332	-		DZA65_RS10075	0.30	-0.3
2,132,332	-		DZA65_RS10075	0.30	-0.0
2,132,350	-		DZA65_RS10075	0.31	-0.7
2,132,766	+		DZA65_RS10075	0.52	-0.3
2,132,799	+		DZA65_RS10075	0.54	-1.5
2,132,799	+		DZA65_RS10075	0.54	+2.9
2,132,800	-		DZA65_RS10075	0.54	+1.0
2,132,801	+		DZA65_RS10075	0.54	-0.7
2,132,801	+		DZA65_RS10075	0.54	-1.0
2,132,801	+		DZA65_RS10075	0.54	-1.5
2,132,801	+		DZA65_RS10075	0.54	+0.1
2,132,801	+		DZA65_RS10075	0.54	-1.0
2,132,801	+		DZA65_RS10075	0.54	-0.1
2,132,801	+		DZA65_RS10075	0.54	-0.7
2,132,801	+		DZA65_RS10075	0.54	-0.7
2,132,801	+		DZA65_RS10075	0.54	-1.3
2,132,802	-		DZA65_RS10075	0.54	+1.3
2,132,802	-		DZA65_RS10075	0.54	+0.3
2,132,802	-				-0.1
2,132,802	-		DZA65_RS10075	0.54	-0.7
2,132,802	-		DZA65_RS10075	0.54	-1.9
2,132,824	+		DZA65_RS10075	0.55	-0.3
2,132,845	+		DZA65_RS10075	0.56	+1.6
2,132,853	+		DZA65_RS10075	0.56	+0.3
2,132,853	+		DZA65_RS10075	0.56	+0.3
2,132,854	-		DZA65_RS10075	0.56	+0.2
2,132,854	-		DZA65_RS10075	0.56	-0.3
2,132,854	-		DZA65_RS10075	0.56	+0.1
2,132,854	-		DZA65_RS10075	0.56	-0.6
2,132,854	-		DZA65_RS10075	0.56	+0.3
2,132,854	-		DZA65_RS10075	0.56	-2.6
2,132,871	-		DZA65_RS10075	0.57	+1.5
2,132,993	+		DZA65_RS10075	0.64	+0.2
2,132,994	-		DZA65_RS10075	0.64	+0.5
2,133,015	-		DZA65_RS10075	0.65	-1.3
2,133,015	-		DZA65_RS10075	0.65	-1.9
2,133,015	-		DZA65_RS10075	0.65	+0.6
2,133,015	-		DZA65_RS10075	0.65	+0.5
2,133,026	+		DZA65_RS10075	0.65	-0.1
2,133,027	-		DZA65_RS10075	0.65	+1.3
2,133,089	+		DZA65_RS10075	0.68	-0.5
2,133,090	-		DZA65_RS10075	0.68	+1.3
2,133,090	-		DZA65_RS10075	0.68	+0.7
2,133,090	-				-1.7
2,133,108	+		DZA65_RS10075	0.69	+0.0
2,133,108	+		DZA65_RS10075	0.69	-1.3
2,133,109	-		DZA65_RS10075	0.69	-0.4
2,133,109	-		DZA65_RS10075	0.69	+0.9
2,133,109	-		DZA65_RS10075	0.69	-1.1
2,133,164	+		DZA65_RS10075	0.72	+0.3
2,133,164	+		DZA65_RS10075	0.72	+1.3
2,133,164	+		DZA65_RS10075	0.72	+0.1
2,133,165	-		DZA65_RS10075	0.72	-0.9
2,133,165	-		DZA65_RS10075	0.72	+2.1
2,133,165	-		DZA65_RS10075	0.72	+1.1
2,133,195	-		DZA65_RS10075	0.74	+0.7
2,133,195	-		DZA65_RS10075	0.74	-0.5
2,133,218	+		DZA65_RS10075	0.75	+0.5
2,133,219	-		DZA65_RS10075	0.75	-1.5
2,133,390	+		DZA65_RS10075	0.84	+0.3
2,133,390	+		DZA65_RS10075	0.84	+0.2
2,133,390	+		DZA65_RS10075	0.84	+1.6
2,133,390	+		DZA65_RS10075	0.84	+0.5
2,133,390	+		DZA65_RS10075	0.84	+0.5
2,133,390	+		DZA65_RS10075	0.84	-0.7
2,133,390	+		DZA65_RS10075	0.84	+3.1
2,133,391	-		DZA65_RS10075	0.84	-2.0
2,133,391	-		DZA65_RS10075	0.84	-0.3
2,133,393	-		DZA65_RS10075	0.84	+0.0
2,133,423	+		DZA65_RS10075	0.85	-1.7
2,133,423	+				+1.3
2,133,423	+		DZA65_RS10075	0.85	-0.1
2,133,424	-		DZA65_RS10075	0.85	-0.1
2,133,424	-		DZA65_RS10075	0.85	-0.1
2,133,424	-		DZA65_RS10075	0.85	-0.9
2,133,424	-		DZA65_RS10075	0.85	-0.3
2,133,424	-		DZA65_RS10075	0.85	+0.9
2,133,424	-		DZA65_RS10075	0.85	-0.6
2,133,440	-				-0.3
2,133,501	-		DZA65_RS10075	0.89	+0.2
2,133,501	-		DZA65_RS10075	0.89	-0.9
2,133,555	-				+1.8
2,133,555	-				+1.0
2,133,555	-				-0.3
2,133,576	-				+0.2
2,133,579	+				-1.0
2,133,579	+				+1.7
2,133,602	-				+1.9
2,133,637	+				+1.3
2,133,637	+				+0.3
2,133,643	+				-1.3
2,133,643	+				-0.3
2,133,643	+				-0.7
2,133,644	-				-1.0
2,133,659	+				+3.0
2,133,666	+				+0.3
2,133,666	+				-1.3
2,133,666	+				-0.6
2,133,666	+				-0.6
2,133,667	-				-0.9
2,133,667	-				-2.5
2,133,715	-				-0.4
2,133,715	-				-0.8
2,133,726	+				-0.9
2,133,726	+				-0.5
2,133,731	+				+0.7
2,133,731	+				-1.3
2,133,732	-				+0.7
2,133,732	-				+0.9
2,133,778	+				+2.9
2,133,778	+				+0.1
2,133,778	+				-1.5
2,133,778	+				+2.2
2,133,778	+				-0.0
2,133,778	+				-0.7
2,133,778	+				+1.0
2,133,779	-				-1.9
2,133,779	-				-1.6
2,133,779	-				+0.7
2,133,779	-				+2.3
2,133,779	-				-2.3
2,133,779	-				-1.0
2,133,779	-				-0.7
2,133,779	-				-1.9
2,133,816	+				-2.1
2,133,827	+				+2.3
2,133,828	-				-1.3
2,133,835	+				+0.5
2,133,835	+				-0.7
2,133,835	+				-0.4
2,133,835	+				-1.2
2,133,835	+				+0.6
2,133,836	-				-1.3
2,133,836	-				-1.1
2,133,836	-				-1.5
2,133,841	+				-0.1
2,133,841	+				+0.5
2,133,841	+				-0.8
2,133,841	+				+0.3
2,133,841	+				+3.6
2,133,841	+				-1.5
2,133,842	-				-0.3
2,133,842	-				+0.7
2,133,857	+				-0.4
2,133,891	-				-1.5
2,133,908	-				+1.6
2,133,965	+				+1.0
2,133,979	+				+1.8
2,133,980	-				-0.0
2,133,993	+				+0.4
2,134,204	-				-1.0
2,134,204	-				-2.0
2,134,224	+				-0.7
2,134,224	+				+0.3
2,134,224	+				+0.3
2,134,225	-				+0.7
2,134,261	+		DZA65_RS10080	0.14	-0.1
2,134,262	-		DZA65_RS10080	0.14	-0.1
2,134,300	-		DZA65_RS10080	0.19	+1.3
2,134,300	-				-1.0
2,134,400	+		DZA65_RS10080	0.33	-1.9
2,134,401	-		DZA65_RS10080	0.33	-1.5
2,134,409	+		DZA65_RS10080	0.34	-1.0
2,134,409	+		DZA65_RS10080	0.34	+0.9
2,134,410	-		DZA65_RS10080	0.34	-1.9
2,134,462	+		DZA65_RS10080	0.41	-0.3
2,134,462	+		DZA65_RS10080	0.41	-1.5
2,134,462	+		DZA65_RS10080	0.41	-2.3
2,134,462	+		DZA65_RS10080	0.41	-1.3
2,134,462	+		DZA65_RS10080	0.41	+1.0
2,134,462	+		DZA65_RS10080	0.41	-0.6
2,134,462	+		DZA65_RS10080	0.41	+1.1
2,134,462	+		DZA65_RS10080	0.41	-1.7
2,134,462	+		DZA65_RS10080	0.41	+0.5
2,134,463	-		DZA65_RS10080	0.42	+0.3
2,134,463	-		DZA65_RS10080	0.42	+0.6
2,134,463	-		DZA65_RS10080	0.42	-1.0
2,134,466	+		DZA65_RS10080	0.42	+0.2
2,134,466	+		DZA65_RS10080	0.42	+0.6
2,134,466	+		DZA65_RS10080	0.42	-0.7
2,134,466	+		DZA65_RS10080	0.42	-0.2
2,134,466	+		DZA65_RS10080	0.42	+0.2
2,134,466	+		DZA65_RS10080	0.42	-0.5
2,134,467	-		DZA65_RS10080	0.42	+0.1
2,134,467	-				-1.3
2,134,467	-		DZA65_RS10080	0.42	-0.3
2,134,467	-		DZA65_RS10080	0.42	-1.0
2,134,467	-		DZA65_RS10080	0.42	+0.1
2,134,467	-		DZA65_RS10080	0.42	+0.9
2,134,543	+		DZA65_RS10080	0.53	-0.3
2,134,543	+		DZA65_RS10080	0.53	-1.9
2,134,543	+		DZA65_RS10080	0.53	-0.8
2,134,543	+		DZA65_RS10080	0.53	+0.3
2,134,544	-		DZA65_RS10080	0.53	-0.7
2,134,544	-		DZA65_RS10080	0.53	-0.3
2,134,544	-		DZA65_RS10080	0.53	-0.3
2,134,544	-		DZA65_RS10080	0.53	-0.3
2,134,544	-		DZA65_RS10080	0.53	+1.6
2,134,544	-		DZA65_RS10080	0.53	-0.7
2,134,544	-		DZA65_RS10080	0.53	-0.9
2,134,544	-		DZA65_RS10080	0.53	-0.3
2,134,678	+		DZA65_RS10080	0.71	+0.8
2,134,678	+		DZA65_RS10080	0.71	-0.6
2,134,678	+		DZA65_RS10080	0.71	+0.9
2,134,678	+		DZA65_RS10080	0.71	-1.3
2,134,678	+		DZA65_RS10080	0.71	-1.0
2,134,678	+		DZA65_RS10080	0.71	-0.3
2,134,678	+		DZA65_RS10080	0.71	+0.6
2,134,679	-		DZA65_RS10080	0.71	+0.8
2,134,679	-		DZA65_RS10080	0.71	-0.7
2,134,679	-		DZA65_RS10080	0.71	-1.0
2,134,679	-		DZA65_RS10080	0.71	-1.7
2,134,679	-		DZA65_RS10080	0.71	+0.1
2,134,679	-		DZA65_RS10080	0.71	-0.5
2,134,679	-		DZA65_RS10080	0.71	+0.7
2,134,679	-		DZA65_RS10080	0.71	+0.1
2,134,683	-		DZA65_RS10080	0.72	-0.6
2,134,708	+		DZA65_RS10080	0.75	-1.4
2,134,708	+		DZA65_RS10080	0.75	+0.1
2,134,708	+		DZA65_RS10080	0.75	+1.3