Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07765

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,616,206	-				+0.4
1,616,282	+				+0.2
1,616,361	+				+0.8
1,616,361	+				+0.9
1,616,362	-				-1.4
1,616,362	-				+1.4
1,616,362	-				+1.3
1,616,362	-				-0.6
1,616,406	+		DZA65_RS07760	0.11	-0.9
1,616,407	-		DZA65_RS07760	0.12	+0.1
1,616,553	+		DZA65_RS07760	0.32	-1.9
1,616,553	+		DZA65_RS07760	0.32	+0.7
1,616,553	+		DZA65_RS07760	0.32	+0.2
1,616,553	+		DZA65_RS07760	0.32	+0.4
1,616,553	+		DZA65_RS07760	0.32	+1.0
1,616,553	+		DZA65_RS07760	0.32	+0.6
1,616,553	+		DZA65_RS07760	0.32	-0.1
1,616,554	-		DZA65_RS07760	0.32	-1.4
1,616,554	-		DZA65_RS07760	0.32	+0.8
1,616,554	-		DZA65_RS07760	0.32	+0.4
1,616,554	-		DZA65_RS07760	0.32	-0.8
1,616,554	-		DZA65_RS07760	0.32	+1.7
1,616,554	-		DZA65_RS07760	0.32	-1.8
1,616,554	-		DZA65_RS07760	0.32	-2.5
1,616,554	-		DZA65_RS07760	0.32	-1.2
1,616,554	-		DZA65_RS07760	0.32	-1.9
1,616,554	-		DZA65_RS07760	0.32	+0.1
1,616,554	-		DZA65_RS07760	0.32	-0.2
1,616,554	-				-1.2
1,616,559	+		DZA65_RS07760	0.33	+2.0
1,616,559	+		DZA65_RS07760	0.33	+0.1
1,616,559	+		DZA65_RS07760	0.33	-1.6
1,616,559	+		DZA65_RS07760	0.33	-0.2
1,616,559	+		DZA65_RS07760	0.33	+0.1
1,616,559	+		DZA65_RS07760	0.33	-1.0
1,616,559	+		DZA65_RS07760	0.33	-0.7
1,616,559	+		DZA65_RS07760	0.33	-2.0
1,616,560	-		DZA65_RS07760	0.33	-0.6
1,616,560	-		DZA65_RS07760	0.33	+0.2
1,616,560	-		DZA65_RS07760	0.33	+0.5
1,616,560	-		DZA65_RS07760	0.33	+0.8
1,616,560	-		DZA65_RS07760	0.33	+1.7
1,616,560	-		DZA65_RS07760	0.33	+0.4
1,616,560	-		DZA65_RS07760	0.33	-2.2
1,616,560	-		DZA65_RS07760	0.33	+0.2
1,616,560	-		DZA65_RS07760	0.33	-0.6
1,616,560	-		DZA65_RS07760	0.33	-2.2
1,616,841	+		DZA65_RS07760	0.72	-0.2
1,616,841	+		DZA65_RS07760	0.72	-0.2
1,616,841	+		DZA65_RS07760	0.72	+1.1
1,616,841	+		DZA65_RS07760	0.72	-1.8
1,616,842	-		DZA65_RS07760	0.72	+1.4
1,616,842	-		DZA65_RS07760	0.72	+0.2
1,616,842	-		DZA65_RS07760	0.72	-1.9
1,616,842	-		DZA65_RS07760	0.72	-1.9
1,616,842	-		DZA65_RS07760	0.72	+0.7
1,616,842	-		DZA65_RS07760	0.72	-1.8
1,616,842	-		DZA65_RS07760	0.72	+0.8
1,616,842	-		DZA65_RS07760	0.72	+0.5
1,616,842	-		DZA65_RS07760	0.72	+0.1
1,616,915	-		DZA65_RS07760	0.82	-1.4
1,616,935	+		DZA65_RS07760	0.85	-0.4
1,616,935	+		DZA65_RS07760	0.85	-0.5
1,616,935	+		DZA65_RS07760	0.85	+1.2
1,616,935	+		DZA65_RS07760	0.85	+1.0
1,616,935	+		DZA65_RS07760	0.85	-1.1
1,616,935	+		DZA65_RS07760	0.85	+1.2
1,616,935	+		DZA65_RS07760	0.85	+0.8
1,616,935	+		DZA65_RS07760	0.85	-0.7
1,616,936	-		DZA65_RS07760	0.85	-2.2
1,616,936	-		DZA65_RS07760	0.85	+0.4
1,616,936	-		DZA65_RS07760	0.85	+0.5
1,616,936	-		DZA65_RS07760	0.85	+0.4
1,616,962	+		DZA65_RS07760	0.89	+0.1
1,616,963	-		DZA65_RS07760	0.89	-0.2
1,616,963	-		DZA65_RS07760	0.89	+2.4
1,617,200	+				-0.2
1,617,342	-		DZA65_RS07765	0.17	+1.6
1,617,342	-		DZA65_RS07765	0.17	-0.8
1,617,414	-		DZA65_RS07765	0.25	-0.1
1,617,433	-		DZA65_RS07765	0.27	+0.8
1,617,465	+		DZA65_RS07765	0.31	-0.6
1,617,465	+		DZA65_RS07765	0.31	+1.1
1,617,465	+		DZA65_RS07765	0.31	-1.6
1,617,466	-		DZA65_RS07765	0.31	+2.0
1,617,466	-		DZA65_RS07765	0.31	+1.9
1,617,466	-		DZA65_RS07765	0.31	-0.7
1,617,478	+		DZA65_RS07765	0.32	-0.1
1,617,478	+		DZA65_RS07765	0.32	-0.1
1,617,478	+		DZA65_RS07765	0.32	-1.3
1,617,479	-		DZA65_RS07765	0.32	-0.2
1,617,479	-		DZA65_RS07765	0.32	-1.6
1,617,564	+		DZA65_RS07765	0.42	-0.6
1,617,564	+		DZA65_RS07765	0.42	-0.6
1,617,564	+		DZA65_RS07765	0.42	-0.4
1,617,564	+		DZA65_RS07765	0.42	+0.9
1,617,564	+		DZA65_RS07765	0.42	+0.4
1,617,564	+		DZA65_RS07765	0.42	+2.0
1,617,564	+		DZA65_RS07765	0.42	-0.9
1,617,564	+		DZA65_RS07765	0.42	-2.8
1,617,565	-		DZA65_RS07765	0.42	+0.8
1,617,565	-		DZA65_RS07765	0.42	-1.6
1,617,565	-		DZA65_RS07765	0.42	-1.3
1,617,565	-		DZA65_RS07765	0.42	-0.3
1,617,565	-		DZA65_RS07765	0.42	+0.2
1,617,565	-		DZA65_RS07765	0.42	+0.1
1,617,565	-		DZA65_RS07765	0.42	-0.7
1,617,565	-		DZA65_RS07765	0.42	-0.2
1,617,565	-		DZA65_RS07765	0.42	-1.7
1,617,565	-				-2.0
1,617,626	+		DZA65_RS07765	0.49	-0.9
1,617,627	-		DZA65_RS07765	0.49	-1.8
1,617,640	-				-1.2
1,617,774	+		DZA65_RS07765	0.65	+1.4
1,617,775	-		DZA65_RS07765	0.65	-1.8
1,617,789	+		DZA65_RS07765	0.67	-2.0
1,617,789	+		DZA65_RS07765	0.67	-0.2
1,617,789	+		DZA65_RS07765	0.67	-0.4
1,617,789	+		DZA65_RS07765	0.67	-1.3
1,617,789	+		DZA65_RS07765	0.67	+1.4
1,617,789	+		DZA65_RS07765	0.67	-0.5
1,617,789	+		DZA65_RS07765	0.67	-0.4
1,617,789	+		DZA65_RS07765	0.67	+0.6
1,617,789	+		DZA65_RS07765	0.67	-1.4
1,617,790	-		DZA65_RS07765	0.67	-1.3
1,617,790	-		DZA65_RS07765	0.67	-1.4
1,617,790	-		DZA65_RS07765	0.67	-0.6
1,617,790	-		DZA65_RS07765	0.67	+2.4
1,617,790	-		DZA65_RS07765	0.67	-1.0
1,617,790	-		DZA65_RS07765	0.67	+1.2
1,617,790	-		DZA65_RS07765	0.67	-2.0
1,617,813	+		DZA65_RS07765	0.69	-1.4
1,617,843	-		DZA65_RS07765	0.73	-2.0
1,617,843	-		DZA65_RS07765	0.73	-0.9
1,617,884	+		DZA65_RS07765	0.77	+1.2
1,617,884	+		DZA65_RS07765	0.77	-2.5
1,617,884	+		DZA65_RS07765	0.77	-1.6
1,617,884	+		DZA65_RS07765	0.77	-0.2
1,617,884	+		DZA65_RS07765	0.77	+0.5
1,617,884	+		DZA65_RS07765	0.77	-0.9
1,617,924	+		DZA65_RS07765	0.82	-2.0
1,618,002	+				+0.4
1,618,002	+				-2.3
1,618,002	+				-0.9
1,618,002	+				-0.1
1,618,002	+				-1.1
1,618,003	-				-1.4
1,618,003	-				+0.8
1,618,003	-				-0.7
1,618,003	-				-0.8
1,618,003	-				+1.4
1,618,003	-				+2.0
1,618,003	-				-0.9
1,618,003	-				+0.4
1,618,003	-				+0.8
1,618,003	-				-0.1
1,618,003	-				-1.2
1,618,003	-				-0.2
1,618,003	-				-0.5
1,618,003	-				+0.6
1,618,003	-				-1.6
1,618,003	-				-0.2
1,618,009	-				-0.9
1,618,028	+				-0.7
1,618,029	-				-1.8
1,618,029	-				-0.8
1,618,116	+				+1.3
1,618,116	+				+1.4
1,618,116	+				+0.4
1,618,129	-				+0.4
1,618,129	-				+1.3
1,618,133	+				-1.4
1,618,133	+				-2.7
1,618,133	+				+0.2
1,618,133	+				-0.6
1,618,134	-				+0.1
1,618,134	-				-0.6
1,618,134	-				+0.2
1,618,134	-				-2.0
1,618,134	-				-0.3
1,618,134	-				+2.6
1,618,134	-				+0.4
1,618,134	-				+0.5
1,618,257	+				+0.0
1,618,257	+				-0.0
1,618,258	-				-0.9
1,618,258	-				-0.2
1,618,258	-				+0.4
1,618,258	-				+0.6
1,618,410	+		DZA65_RS07770	0.20	+0.1
1,618,410	+		DZA65_RS07770	0.20	-0.4
1,618,468	-		DZA65_RS07770	0.24	+0.4
1,618,468	-		DZA65_RS07770	0.24	+1.2
1,618,473	-		DZA65_RS07770	0.25	+0.8
1,618,473	-		DZA65_RS07770	0.25	-1.9
1,618,473	-		DZA65_RS07770	0.25	-0.2
1,618,508	+		DZA65_RS07770	0.27	-1.6
1,618,508	+		DZA65_RS07770	0.27	-1.3
1,618,508	+		DZA65_RS07770	0.27	+0.5
1,618,508	+		DZA65_RS07770	0.27	-0.6
1,618,508	+		DZA65_RS07770	0.27	-0.8
1,618,508	+		DZA65_RS07770	0.27	-0.9
1,618,509	-		DZA65_RS07770	0.27	-2.2
1,618,509	-		DZA65_RS07770	0.27	-0.4
1,618,509	-		DZA65_RS07770	0.27	-1.6
1,618,706	+		DZA65_RS07770	0.43	+1.4
1,618,751	+		DZA65_RS07770	0.46	+2.0
1,618,751	+		DZA65_RS07770	0.46	+1.9
1,618,751	+		DZA65_RS07770	0.46	-2.4
1,618,752	-		DZA65_RS07770	0.46	-0.6
1,618,765	-		DZA65_RS07770	0.47	-0.8
1,618,781	+		DZA65_RS07770	0.48	-1.9
1,618,859	+		DZA65_RS07770	0.54	-0.2
1,618,860	-		DZA65_RS07770	0.55	+0.4
1,618,860	-		DZA65_RS07770	0.55	-0.6
1,618,930	-		DZA65_RS07770	0.60	-0.9
1,618,943	+		DZA65_RS07770	0.61	-0.2
1,618,943	+		DZA65_RS07770	0.61	+0.4
1,618,943	+		DZA65_RS07770	0.61	-0.2
1,618,943	+		DZA65_RS07770	0.61	-2.0
1,618,944	-		DZA65_RS07770	0.61	-2.0
1,618,944	-		DZA65_RS07770	0.61	-1.4
1,618,944	-		DZA65_RS07770	0.61	-0.0
1,618,944	-				+1.4
1,618,944	-		DZA65_RS07770	0.61	+0.4
1,619,034	+		DZA65_RS07770	0.68	+0.1
1,619,034	+		DZA65_RS07770	0.68	+0.4
1,619,034	+		DZA65_RS07770	0.68	-2.5
1,619,034	+		DZA65_RS07770	0.68	-1.8
1,619,035	-		DZA65_RS07770	0.68	-1.6
1,619,035	-		DZA65_RS07770	0.68	+0.7
1,619,035	-		DZA65_RS07770	0.68	-0.9
1,619,035	-		DZA65_RS07770	0.68	-0.2