Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07020

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,452,585	+		DZA65_RS07010	0.70	+0.5
1,452,586	-		DZA65_RS07010	0.70	-2.0
1,452,676	+		DZA65_RS07010	0.81	+0.5
1,452,676	+		DZA65_RS07010	0.81	-0.7
1,452,706	+		DZA65_RS07010	0.85	-2.7
1,452,752	+				+0.8
1,452,785	-				-1.3
1,452,791	+				+0.5
1,452,791	+				-0.4
1,452,792	-				+0.4
1,452,826	-				-1.4
1,452,855	-				-0.5
1,452,855	-				+1.5
1,452,988	+		DZA65_RS07015	0.26	+0.8
1,453,012	+				-0.1
1,453,013	-		DZA65_RS07015	0.29	-0.0
1,453,051	-		DZA65_RS07015	0.35	+0.2
1,453,079	+		DZA65_RS07015	0.39	+0.7
1,453,223	+		DZA65_RS07015	0.60	-0.5
1,453,224	-		DZA65_RS07015	0.60	+1.2
1,453,253	+		DZA65_RS07015	0.64	-1.4
1,453,253	+		DZA65_RS07015	0.64	+0.0
1,453,253	+		DZA65_RS07015	0.64	-0.8
1,453,256	+		DZA65_RS07015	0.65	-0.6
1,453,256	+		DZA65_RS07015	0.65	-1.1
1,453,256	+		DZA65_RS07015	0.65	-1.5
1,453,256	+		DZA65_RS07015	0.65	+1.5
1,453,270	+		DZA65_RS07015	0.67	+0.7
1,453,270	+		DZA65_RS07015	0.67	+0.1
1,453,271	-		DZA65_RS07015	0.67	-0.1
1,453,271	-		DZA65_RS07015	0.67	-0.2
1,453,365	+				-2.1
1,453,365	+		DZA65_RS07015	0.80	-1.1
1,453,365	+		DZA65_RS07015	0.80	-0.7
1,453,365	+		DZA65_RS07015	0.80	-1.3
1,453,365	+		DZA65_RS07015	0.80	+0.2
1,453,365	+		DZA65_RS07015	0.80	+0.5
1,453,365	+		DZA65_RS07015	0.80	-0.5
1,453,365	+		DZA65_RS07015	0.80	-0.1
1,453,365	+		DZA65_RS07015	0.80	+0.3
1,453,365	+		DZA65_RS07015	0.80	+2.1
1,453,365	+		DZA65_RS07015	0.80	+0.6
1,453,365	+		DZA65_RS07015	0.80	-0.5
1,453,365	+		DZA65_RS07015	0.80	+0.5
1,453,366	-		DZA65_RS07015	0.81	+0.7
1,453,366	-		DZA65_RS07015	0.81	+0.5
1,453,366	-		DZA65_RS07015	0.81	-0.3
1,453,366	-		DZA65_RS07015	0.81	-2.7
1,453,366	-		DZA65_RS07015	0.81	+0.5
1,453,366	-				-0.5
1,453,366	-		DZA65_RS07015	0.81	+0.1
1,453,366	-		DZA65_RS07015	0.81	-0.4
1,453,366	-		DZA65_RS07015	0.81	-1.8
1,453,366	-		DZA65_RS07015	0.81	+1.5
1,453,366	-		DZA65_RS07015	0.81	+0.9
1,453,366	-		DZA65_RS07015	0.81	+0.5
1,453,366	-		DZA65_RS07015	0.81	-0.5
1,453,366	-		DZA65_RS07015	0.81	-0.5
1,453,366	-		DZA65_RS07015	0.81	-1.1
1,453,366	-		DZA65_RS07015	0.81	+2.5
1,453,367	+		DZA65_RS07015	0.81	-0.9
1,453,367	+		DZA65_RS07015	0.81	-0.2
1,453,367	+		DZA65_RS07015	0.81	-1.8
1,453,367	+		DZA65_RS07015	0.81	+1.9
1,453,368	-		DZA65_RS07015	0.81	-0.5
1,453,368	-		DZA65_RS07015	0.81	-2.3
1,453,368	-		DZA65_RS07015	0.81	-0.5
1,453,368	-		DZA65_RS07015	0.81	+0.7
1,453,516	+				+0.3
1,453,517	-				-0.9
1,453,736	+		DZA65_RS07020	0.22	+1.7
1,453,758	+		DZA65_RS07020	0.24	+1.7
1,453,759	-		DZA65_RS07020	0.25	-0.3
1,453,864	+		DZA65_RS07020	0.34	-2.9
1,453,865	-		DZA65_RS07020	0.35	-1.3
1,453,865	-		DZA65_RS07020	0.35	+0.7
1,453,980	+		DZA65_RS07020	0.45	-0.9
1,454,048	+		DZA65_RS07020	0.52	-0.5
1,454,048	+		DZA65_RS07020	0.52	-1.3
1,454,048	+		DZA65_RS07020	0.52	+1.0
1,454,048	+		DZA65_RS07020	0.52	-1.2
1,454,049	-		DZA65_RS07020	0.52	+0.2
1,454,049	-		DZA65_RS07020	0.52	-2.5
1,454,049	-		DZA65_RS07020	0.52	+0.1
1,454,049	-		DZA65_RS07020	0.52	-1.1
1,454,049	-		DZA65_RS07020	0.52	-1.1
1,454,077	-		DZA65_RS07020	0.55	-1.8
1,454,077	-		DZA65_RS07020	0.55	-0.1
1,454,198	-		DZA65_RS07020	0.66	+0.9
1,454,234	+		DZA65_RS07020	0.69	+0.7
1,454,235	-		DZA65_RS07020	0.69	-0.1
1,454,470	+				+0.1
1,454,470	+				-0.4
1,454,471	-				-2.4
1,454,471	-				+0.4
1,454,522	+				-1.0
1,454,522	+				+0.9
1,454,522	+				+0.9
1,454,523	-				-0.2
1,454,555	+				-0.5
1,454,555	+				+0.5
1,454,555	+				+2.5
1,454,562	+				-0.0
1,454,562	+				-0.5
1,454,562	+				+1.3
1,454,563	-				+0.9
1,454,563	-				-1.3
1,454,563	-				-1.0
1,454,563	-				+0.2
1,454,563	-				-1.8
1,454,695	+				+0.4
1,454,696	-				+0.5
1,454,696	-				+0.5
1,454,696	-				-0.9
1,454,696	-				-0.1
1,454,838	+		DZA65_RS07025	0.27	-1.3
1,454,839	-		DZA65_RS07025	0.27	-0.5
1,454,839	-		DZA65_RS07025	0.27	-2.8
1,455,085	-		DZA65_RS07025	0.57	-0.5
1,455,095	+		DZA65_RS07025	0.59	+1.5
1,455,095	+		DZA65_RS07025	0.59	-1.1
1,455,095	+		DZA65_RS07025	0.59	+0.3
1,455,096	-		DZA65_RS07025	0.59	+0.8
1,455,096	-		DZA65_RS07025	0.59	-0.6
1,455,096	-		DZA65_RS07025	0.59	-0.1
1,455,096	-		DZA65_RS07025	0.59	-1.7
1,455,116	+		DZA65_RS07025	0.61	+1.9
1,455,116	+		DZA65_RS07025	0.61	+1.5
1,455,117	-		DZA65_RS07025	0.61	+0.9
1,455,117	-		DZA65_RS07025	0.61	-0.5
1,455,215	+		DZA65_RS07025	0.73	-0.6
1,455,221	+		DZA65_RS07025	0.74	-1.3
1,455,221	+		DZA65_RS07025	0.74	+0.1
1,455,222	-		DZA65_RS07025	0.74	+0.2
1,455,227	+		DZA65_RS07025	0.75	+0.4
1,455,227	+		DZA65_RS07025	0.75	-1.1
1,455,227	+		DZA65_RS07025	0.75	-0.8
1,455,227	+		DZA65_RS07025	0.75	+0.5
1,455,227	+		DZA65_RS07025	0.75	-1.1
1,455,227	+		DZA65_RS07025	0.75	-0.8
1,455,227	+		DZA65_RS07025	0.75	+0.6
1,455,228	-		DZA65_RS07025	0.75	+0.5
1,455,228	-		DZA65_RS07025	0.75	+0.5
1,455,256	-		DZA65_RS07025	0.78	-1.3
1,455,428	+				+0.1
1,455,428	+				+0.3
1,455,429	-				+0.9
1,455,438	+				-1.5
1,455,439	-				+0.9
1,455,439	-				-1.1
1,455,439	-				-0.5
1,455,477	+				-0.4
1,455,477	+				-0.8
1,455,477	+				+1.1
1,455,478	-				-0.3
1,455,478	-				+0.2