Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05605

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,151,786	-		DZA65_RS05595	0.65	+0.7
1,151,934	+		DZA65_RS05595	0.85	-1.9
1,152,025	+				+1.6
1,152,026	-				+2.3
1,152,031	+				+0.6
1,152,032	-				-1.5
1,152,032	-				+1.0
1,152,032	-				+1.0
1,152,080	+				-1.0
1,152,082	+				+1.2
1,152,082	+				-0.4
1,152,082	+				+1.3
1,152,083	-				+0.4
1,152,083	-				-0.4
1,152,083	-				-0.8
1,152,097	+				+0.6
1,152,098	-				-1.1
1,152,188	+				+0.7
1,152,189	-				-0.8
1,152,189	-				-0.1
1,152,189	-				-0.4
1,152,189	-				-0.8
1,152,260	+		DZA65_RS05600	0.21	-0.8
1,152,261	-		DZA65_RS05600	0.21	-0.3
1,152,307	-		DZA65_RS05600	0.28	-0.0
1,152,307	-		DZA65_RS05600	0.28	+0.3
1,152,307	-		DZA65_RS05600	0.28	-0.4
1,152,307	-		DZA65_RS05600	0.28	-0.0
1,152,336	+		DZA65_RS05600	0.33	-0.8
1,152,337	-		DZA65_RS05600	0.33	+2.4
1,152,354	+		DZA65_RS05600	0.36	-1.0
1,152,354	+		DZA65_RS05600	0.36	-1.6
1,152,358	-		DZA65_RS05600	0.36	-0.3
1,152,369	+		DZA65_RS05600	0.38	+1.6
1,152,370	-		DZA65_RS05600	0.38	+0.6
1,152,370	-		DZA65_RS05600	0.38	-0.4
1,152,370	-		DZA65_RS05600	0.38	+0.1
1,152,432	+		DZA65_RS05600	0.48	+1.6
1,152,432	+		DZA65_RS05600	0.48	-0.8
1,152,432	+		DZA65_RS05600	0.48	-0.0
1,152,432	+		DZA65_RS05600	0.48	+0.5
1,152,433	-		DZA65_RS05600	0.48	-0.8
1,152,433	-		DZA65_RS05600	0.48	-0.3
1,152,437	+		DZA65_RS05600	0.49	-1.6
1,152,437	+		DZA65_RS05600	0.49	+0.2
1,152,438	-		DZA65_RS05600	0.49	+0.3
1,152,438	-		DZA65_RS05600	0.49	-0.4
1,152,438	-		DZA65_RS05600	0.49	+0.3
1,152,438	-		DZA65_RS05600	0.49	+0.2
1,152,494	+		DZA65_RS05600	0.58	+3.1
1,152,494	+		DZA65_RS05600	0.58	-1.5
1,152,494	+		DZA65_RS05600	0.58	+1.6
1,152,494	+		DZA65_RS05600	0.58	-1.6
1,152,494	+		DZA65_RS05600	0.58	+2.6
1,152,495	-		DZA65_RS05600	0.58	+0.2
1,152,495	-		DZA65_RS05600	0.58	-0.4
1,152,495	-		DZA65_RS05600	0.58	-0.0
1,152,495	-		DZA65_RS05600	0.58	+1.3
1,152,495	-		DZA65_RS05600	0.58	+0.6
1,152,495	-		DZA65_RS05600	0.58	-0.0
1,152,495	-		DZA65_RS05600	0.58	+1.3
1,152,495	-		DZA65_RS05600	0.58	-0.8
1,152,495	-		DZA65_RS05600	0.58	-2.5
1,152,547	+		DZA65_RS05600	0.66	+0.7
1,152,547	+		DZA65_RS05600	0.66	-0.0
1,152,548	-		DZA65_RS05600	0.66	+0.2
1,152,551	-		DZA65_RS05600	0.67	-0.8
1,152,551	-		DZA65_RS05600	0.67	+1.2
1,152,638	+		DZA65_RS05600	0.80	-0.0
1,152,638	+		DZA65_RS05600	0.80	+0.1
1,152,642	-		DZA65_RS05600	0.81	-2.4
1,152,657	+		DZA65_RS05600	0.83	-0.8
1,152,657	+		DZA65_RS05600	0.83	+1.9
1,152,658	-		DZA65_RS05600	0.83	+1.6
1,152,658	-		DZA65_RS05600	0.83	-0.3
1,152,670	+		DZA65_RS05600	0.85	+1.2
1,152,738	+				+0.3
1,152,739	-				+0.6
1,152,740	+				-2.1
1,152,740	+				-0.6
1,152,740	+				+1.6
1,152,740	+				+0.6
1,152,740	+				-1.3
1,152,741	-				-1.9
1,152,741	-				-1.3
1,152,741	-				-0.0
1,152,741	-				+0.1
1,152,741	-				-1.6
1,152,741	-				+0.7
1,153,184	-		DZA65_RS05605	0.48	+0.8
1,153,184	-		DZA65_RS05605	0.48	-0.8
1,153,289	+		DZA65_RS05605	0.61	-1.0
1,153,290	-		DZA65_RS05605	0.61	-0.3
1,153,333	+		DZA65_RS05605	0.66	+1.5
1,153,333	+		DZA65_RS05605	0.66	-1.0
1,153,334	-		DZA65_RS05605	0.66	+1.4
1,153,334	-		DZA65_RS05605	0.66	-0.4
1,153,334	-		DZA65_RS05605	0.66	-1.9
1,153,334	-		DZA65_RS05605	0.66	-0.1
1,153,337	+		DZA65_RS05605	0.66	+0.6
1,153,337	+		DZA65_RS05605	0.66	-1.0
1,153,337	+		DZA65_RS05605	0.66	-0.0
1,153,337	+		DZA65_RS05605	0.66	-1.1
1,153,338	-		DZA65_RS05605	0.67	-0.3
1,153,338	-		DZA65_RS05605	0.67	+1.0
1,153,338	-		DZA65_RS05605	0.67	-1.3
1,153,338	-		DZA65_RS05605	0.67	+1.3
1,153,366	-		DZA65_RS05605	0.70	+0.9
1,153,414	-		DZA65_RS05605	0.76	-2.9
1,153,414	-		DZA65_RS05605	0.76	-0.0
1,153,497	+		DZA65_RS05605	0.85	-1.5
1,153,498	-		DZA65_RS05605	0.85	+4.6
1,153,509	-		DZA65_RS05605	0.87	-1.5
1,153,509	-		DZA65_RS05605	0.87	+1.0
1,153,524	+		DZA65_RS05605	0.89	-0.5
1,153,524	+		DZA65_RS05605	0.89	+0.6
1,153,557	+				-1.2
1,153,557	+				-1.0
1,153,557	+				-0.0
1,153,558	-				+0.3
1,153,692	+				-1.9
1,153,693	-				-0.8
1,153,693	-				+2.1
1,153,703	+				-0.0
1,153,703	+				-2.1
1,153,703	+				+3.1
1,153,703	+				-2.0
1,153,703	+				+0.2
1,153,704	-				-1.3
1,153,704	-				-0.0
1,153,704	-				-0.4
1,153,704	-				-0.4
1,153,704	-				+0.1
1,153,707	+				+0.6
1,153,707	+				+0.8
1,153,707	+				+0.8
1,153,707	+				-0.4
1,153,708	-				-1.1
1,153,708	-				-0.3
1,153,708	-				+0.3
1,153,708	-				-1.3
1,153,725	+				+0.8
1,153,725	+				+1.6
1,153,726	-				-0.6
1,153,726	-				-1.9
1,153,833	+				+0.2
1,153,834	-				-1.6
1,153,851	+				-0.6
1,153,851	+				+1.6
1,153,851	+				+0.7
1,153,851	+				-0.0
1,153,851	+				+1.2
1,153,851	+				+1.9
1,153,852	-				-1.0
1,153,852	-				+0.6
1,153,854	+				-0.8
1,153,854	+				-0.0
1,153,854	+				-0.6
1,153,854	+				+0.1
1,153,854	+				-0.0
1,153,855	-				+0.2
1,153,855	-				+0.7
1,153,855	-				+0.6
1,153,855	-				-2.1
1,153,855	-				+0.2
1,153,855	-				-1.1
1,153,855	-				+0.4
1,153,857	+				-0.0
1,153,857	+				-1.3
1,153,857	+				-1.8
1,153,857	+				+0.6
1,153,857	+				+0.3
1,153,858	-				-0.4
1,153,858	-				-0.4
1,153,962	+		DZA65_RS05610	0.18	-1.6
1,153,974	+		DZA65_RS05610	0.20	-1.0
1,153,974	+		DZA65_RS05610	0.20	+1.0
1,154,002	-		DZA65_RS05610	0.25	-0.4
1,154,093	-		DZA65_RS05610	0.41	-0.5
1,154,293	+		DZA65_RS05610	0.75	-1.4
1,154,293	+		DZA65_RS05610	0.75	-1.6
1,154,294	-		DZA65_RS05610	0.75	+0.1
1,154,294	-		DZA65_RS05610	0.75	-0.8
1,154,308	+		DZA65_RS05610	0.78	+0.6
1,154,308	+		DZA65_RS05610	0.78	+0.2
1,154,308	+		DZA65_RS05610	0.78	-1.3
1,154,308	+		DZA65_RS05610	0.78	+0.9
1,154,309	-		DZA65_RS05610	0.78	-0.5
1,154,309	-		DZA65_RS05610	0.78	+1.0
1,154,309	-		DZA65_RS05610	0.78	+0.6
1,154,336	+		DZA65_RS05610	0.83	+0.5
1,154,336	+		DZA65_RS05610	0.83	-0.6
1,154,337	-		DZA65_RS05610	0.83	-0.3
1,154,340	+		DZA65_RS05610	0.83	+0.6
1,154,340	+		DZA65_RS05610	0.83	+2.6
1,154,340	+		DZA65_RS05610	0.83	-1.4
1,154,340	+				-1.0
1,154,340	+		DZA65_RS05610	0.83	+0.6
1,154,341	-		DZA65_RS05610	0.83	-0.9
1,154,341	-		DZA65_RS05610	0.83	+0.2
1,154,341	-		DZA65_RS05610	0.83	-0.4
1,154,341	-		DZA65_RS05610	0.83	-1.3
1,154,341	-		DZA65_RS05610	0.83	-1.0
1,154,341	-		DZA65_RS05610	0.83	-0.0
1,154,368	+		DZA65_RS05610	0.88	+1.6
1,154,369	-		DZA65_RS05610	0.88	+0.6
1,154,369	-		DZA65_RS05610	0.88	-0.6
1,154,369	-		DZA65_RS05610	0.88	-1.3
1,154,370	+		DZA65_RS05610	0.88	-0.6
1,154,370	+		DZA65_RS05610	0.88	-1.3
1,154,370	+		DZA65_RS05610	0.88	-0.7
1,154,370	+		DZA65_RS05610	0.88	-1.6
1,154,370	+		DZA65_RS05610	0.88	+0.2
1,154,371	-		DZA65_RS05610	0.89	-0.2
1,154,371	-		DZA65_RS05610	0.89	+0.9
1,154,371	-		DZA65_RS05610	0.89	-0.7
1,154,371	-		DZA65_RS05610	0.89	+0.4
1,154,371	-		DZA65_RS05610	0.89	+0.0
1,154,371	-		DZA65_RS05610	0.89	-0.0
1,154,371	-		DZA65_RS05610	0.89	-1.1
1,154,414	-				+0.2
1,154,417	-				+0.2
1,154,417	-				-0.0
1,154,470	+				-0.8
1,154,570	+				+0.4